| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,620,448 | A→G | 10.0% | intergenic (+19/‑210) | PP_3186 → / → codB | transcriptional regulator/cytosine transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,620,448 | 0 | A | G | 10.0% | 466.0 / 14.9 | 181 | intergenic (+19/‑210) | PP_3186/codB | transcriptional regulator/cytosine transporter |
| Reads supporting (aligned to +/- strand): ref base A (50/102); new base G (14/2); total (77/104) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.97e-05 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 182 total aligned reads displayed.
GCAAGCACCTGGATGAACTGGCCGCGCGCAGCATGACCGAGCAGCGGTTCGCCGAACTGGCAGGGATTTTTGGCCAGGCCTCCAGCCTGGAGGCGGATTTCTGGCAAATGGGGTTGGACGGGACCGTGTAAACCGCCGTGGGCTGGGTGATTACTACCCAGCCCAGGACCGCTTTGGTGCATGGGCGCCTCAAAATAAGTCGTCCCGCACACTCCAGATCGTCAGATCGCAGCTTTAATGTGCACAGTGCATATGGATTTCTGGGCGAACAGCCCGATTTCTTCCGGGTGGCGGCGCA > NC_002947/3620299‑3620596 | cAAGCACCTGGATGAACTGGCCGCGCGCAGCATGACCGAGCAGCGGTTCGCCGAACTGGCAGGGATTTTTGGCCAGGCCTCCAGCCTGGAGGCGGATTTCTGGCAAATGGGGTTGGACGGGACCGTGTAAACCGCCGTGGGCGGGGGGAt > 1:4314172/1‑150 (MQ=255) aGCACCTGGATGAACTGGCCGCGCGCAGCATGACCGAGCAGCGGTTCGCCGAACTGGCAGGGATTTTTGGCCAGGCCTCCAGCCTGGAGGCGGATTTCTGGCAAATGGGGTTGGACGGGACCGTGTAAACCGCCGTGGGCTGGGTGATta < 2:841266/150‑1 (MQ=255) aGCACCTGGATGAACTGGCCGCGCGCAGCATGACCGAGCAGCGGTTCGCCGAACTGGCAGGGATTTTTGGCCAGGCCTCCAGCCTGGAGGCGGATTTCTGGCAAATGGGGTTGGACGGGACCGTGTAAACCGCCGTGGGCTGGGTGATta < 1:516542/150‑1 (MQ=255) aGCACCTGGATGAACTGGCCGCGCGCAGCATGACCGAGCAGCGGTTCGCCGAACTGGCAGGGATTTTTGGCCAGGCCTCCAGCCTGGAGGCGGATTTCTGGCAAATGGGGTTGGACGGGACCGTGTAAACCGCCGTGGGCTGGGTGATta < 1:516965/150‑1 (MQ=255) gCACCTGGATGAACTGGCCGCGCGCAGCATGACCGAGCAGCGGTTCGCCGAACTGGCAGGGATTTTTGGCCAGGCCTCCAGCCTGGAGGCGGATTTCTGGCAAATGGGGTTGGACGGGACCGTGTAAACCGCCGTGGGCTGGGTGATtac < 1:4579326/150‑1 (MQ=255) ggATGAACTGGCCGCGCGCAGCATGACCGCGCAGCGGGTCGCCGAACTGGCAGGGATTTTTGGCCAGGCCTCCAGCCTGGAGGCGGATTTCTGGCAAATGGGGTTGGACGGGACCGTGTAAACCGCCGTGGGCTGGGTGATTACTAccca < 2:3973181/150‑1 (MQ=255) gATGAACTGGCCGCGCGCAGCATGACCGAGCAGCGGTTCGCCGAACTGGCAGGGATTTTTGGCCAGGCCTCCAGCCTGGAGGCGGATTTCTGGCAAATGGGGTTGGACGGGACCGTGTAAACCGCCGTGGGCTGGGGGATTACAAaccag > 1:3203162/1‑150 (MQ=255) gATGAACTGGCCGCGCGCAGCATGACCGAGCAGCGGTTCGCCGAACTGGCAGGGATTTTTGGCCAGGCCTCCAGCCTGGAGGCGGATTTCTGGCAAATGGGGTTGGACGGGACCGTGTAAACCGCCGTGGGCGGGGTGATTAAAAcccac > 2:1001902/1‑149 (MQ=255) aTGAACTGGCCGCGCGCAGCATGACCGAGCAGCGGTTCGCCGAACTGGCAGGGATTTTTGGCCAGGCCTCCAGCCTGGAGGCGGATTTCTGGCAAATGGGGTTGGACGGGACCGTGTAAACCGCCGTGGGCTGGGTGATTACTAcccagc < 1:1089799/150‑1 (MQ=255) tGAACTGGCCGCGCGCAGCATGACCGAGCAGCGGTTCGCCGAACTGGCAGGGATTTTTGGCCAGGTCTCCAGCCTGGAGGCGGATTTCTGGCAAATGGGGTTGGACGGGACCGTGTAAACCGCCGTGGGCTGGGTGATTACTAcccagcc < 1:793697/150‑1 (MQ=255) tGAACTGGCCGCGCGCAGCATGACCGAGCAGCGGTTCGCCGAACTGGCAGGGATTTTTGGCCAGGCCTCCAGCCTGGAGGCGGATTTCTGGCAAATGGGGTTGGACGGGACCGTGTAAACCGCCGTGGGCTGGGTGATTACTAcccagcc < 2:2608889/150‑1 (MQ=255) tGAACTGGCCGCGCGCAGCATGACCGAGCAGCGGTTCGCCGAACGGGCAGGGATTTTTGGCCAGGCCTCCAGCCTGGAGGCGGATTTCTGGCAAATGGGGTTGGACGGGACCGTGTAAACCGCCGTGGGCTGGGTGATTACTAcccagcc < 2:3700727/150‑1 (MQ=255) tGGTCGCGCGCAGCATGACCGAGCAGCGGTTCGCCGAACTGGCAGGGATTTTTGGCCAGGCCTCCAGCCTGGAGGCGGATTTCTGGCAAATGGGGTTGGACGGGACCGTGTAAACCGCCGTGGGCTGGGTGATTACTACCCAGCCCAGGa < 2:4296653/150‑1 (MQ=255) ccGCGCGCAGCATGACCGAGCAGCGGTTCGCCGAACTGGCAGGGATTTTTGGCCAGGCCTCCAGCCTGGAGGCGGATTTCTGGCAAATGGGGTTGGACGGGACCGTGTAAACCGCCGTGGGCTGGGTGATTACTACCCAGCCCAGGACCg < 2:5569839/150‑1 (MQ=255) cgcgcgCAGCATGACCGAGCAGCGGTTCGCCGAACTGGCAGGGATTTTTGGCCAGGCCTCCAGCCTGGAGGCGGATTTCTGGCAAATGGGGTTGGACGGGACCGTGTAAACCGCCGTGGGCTGGGTGTTTACTACCCAGCCCAGGACCGc > 2:2567745/1‑150 (MQ=255) cgcgcAGCATGACCGAGCAGCGGTTCGCCGAACTGGCAGGGATTTTTGGCCAGGCCTCCAGCCTGGAGGCGGATTTCTGGCAAATGGGGTTGGACGGGACCGTGTAAACCGCCGTGGGCTGGGTGATTACTACCCAGCCCAGGACCGCtt < 2:2760085/150‑1 (MQ=255) gcgcAGCAGGACCGAGCCGCGGTTCGCCGAACTGGCAGGGATTTTGGGCCAGGCCTCCAGCGTGGAGGCGGTTTTCTGGCAAATGGGGTGGGACGGGACCGTGTAAACCGCCGTGGGCTGGGTGATTACTACCCAGCCCAGGACCGCttt < 1:3356232/150‑1 (MQ=255) gcagcaTGACCGAGCAGCGGTTCGCCGAACTGGCAGGGATTTTTGGCCAGGCCTCCAGCCTGGAGGCGGATTTCTGGCAAATGGGGTTGGACGGGACCGTGTAAACCGCCGTGGGCTTGGTGTTTACTACCCAGCCCCGGACCGCTTTgg > 1:5521165/1‑150 (MQ=255) gcagcaTGACCGAGCAGCGGTTCGCCGAACTGGCAGGGATTTTTGGCCAGGCCTCCAGCCTGGAGGCGGATTTCTGGCAAATGGGGTTGGACGGGACCGTGTAAACCGCCGTGGGCTGGGTGATTACTACCCAGCCCAGGACCGCTTTgg < 2:656324/150‑1 (MQ=255) gcagcaTGACCCAGCAGCGGTTCGCCGAACTGCCAGTGATTTTTGGCCAGGCCTCCAGCCTGTAGGCTGATTAATGGCAAATGGGGTTGGACGGGACCGTGTAAACCGCCGTGGGCTGGGTGATTACTACCCAGCCCAGGACCGCTTTgg < 2:656651/150‑1 (MQ=255) caTGACCGCGCAGCGGTTCGCCGAACTGGCAGGGATTTTTGGCCAGGCCCCCAGCCTGGAGGCGGATTTCTGGCAATGGGGGTTGGACGGGACCGTGTAAACCGCCGTGGGCTGGGTGATTACTACCCAGCCCAGGACCGCTTTGGTGCa < 1:5319221/150‑1 (MQ=255) caTGACCGAGCAGCGGTTCGCCGAACTGGCAGGGATTTTTGGCCAGGCCTCCAGCCTGGAGGCGGATTTCTGGCAAATGGGGTTGGACGGGACCGTGTAAACCGCCGTGGGGTGGGTGTTTTATAACCACCCCACGCCCCCATTGGTgga > 1:1878048/1‑148 (MQ=255) tGACCGAGCAGCGGTTCGCCGAACTGGCAGGGATTTTTGGCCAGGCCTCCAGCCTGGAGGCGGATTTCTGGCAAATGGGGTTGGACGGGACCGTGTAAACCGCCGTGGGCGGGGTGATTACTACCCAGCCCAGGACCGCGTTGGTGCATg > 2:1731313/1‑150 (MQ=255) gACCGAGCAGCGGTTCGCCGAACTGGCAGGGATTTTTGGCCAGGCCTCCAGCCTGGAGGCGGATTTCTGGCAAATGGGGTTGGACGGGACCGTGTAAACCGCCGTGGGGTGGGGGATTACAAACCCCCCCACGACCCCGATGGTGGATgg > 1:2567333/1‑150 (MQ=255) aCCGAGCAGCGGTTCGCCGAACTGGCAGGGATTTTTGGCCAGGCCTCCAGCCTGGAGGCGGATTTCTGGCAAATGGGGTTGGACGGGACCGTGTAAACCGCCGTGGGCTGGGTGATTACTACCCAGCCCAGGACCGCTTTGGTGCATggg < 2:4837051/150‑1 (MQ=255) cGAGCAGCGGTTCGCCGAACTGGCAGGGATTTTTGGCCAGGCCTCCAGCCTGGAGGCGGATTTCTGGCAAATGGGGTTGGACGGGACCGTGTAAACCGCCGTGGGGTGGGGGGTTACTAACCACCCCACGCCCCCGTTTGTGCATggggg > 1:1004606/1‑148 (MQ=255) gAGCAGCGGGTCGCCGAACTGGCAGGGATTTTTGGCCAGGCCTCCAGCCTGGAGGCGGATTTCTGGCAAATGGGGTTGGACGGGACCGTGTAAACCGCCGTGGGCTGGGTGATTACTACCCAGCCCAGGACCGCTTTGGTGCATGGgcgc < 1:3921155/150‑1 (MQ=255) agcGGTTCGCCGAACTGGCAGGGATTTTTGGCCAGGCCTCCAGCCTGGAGGCGGATTTCTGGCAAATGGGGTTGGACGGGACCGTGTAAACCGCCGTGGGCTGGGTGATTACTACCCAGCCCAGGACCGCTTTGGTGCATGGGCGCCTCa < 1:1306289/150‑1 (MQ=255) gcGGTTCGCCGAACTGGCAGGGATTTTTGGCCAGGCCTCCAGCCTGGAGGCGGATTTCTGGCAAATGGGGTTGGACGGGACCGTGAAAACCGCCGTGGGCTGGGTTATTAAAAACCAGACCAGGAACCCATTGGTTGATGTGCGCCTaaa > 2:4032861/1‑150 (MQ=255) cGGTTCGCCGAACTGGCAGGGATTTTTGGCCAGGCCTCCAGCCTGGAGGCGGATTTCTGGCAAATGGGGTTGGACGGGACCGTGTAAACCGCCGTGGGCTGGGTGATTACTACCCAGCCCAGGACCGCTTTGGTGCATGGGCGCCTCaaa < 1:3658263/150‑1 (MQ=255) cGGTTCGCCGAACTGGCAGGGATTTTTGGCCAGGCCTCCAGCCTGGAGGCGGATTTCTGGCAAATGGGGTTGGACGGGACCGTGTAAACCGCCGTGGGCTGGGTGATTACTACCCAGCCCAGGACCGCTTTGGTGCATGGGCGCCTCaaa < 1:2765105/150‑1 (MQ=255) gTTCGCCGAACTGGCAGGGATTTTTGGCCAGGCCTCCAGCCTGGAGGCGGATTTCTGGAAAATGGGGTTGGACGGGACCGTGTAAACCGCCGTGGGCTGGGTGATTACTACCCAGCCCAGGACCGCTTTGGTGCATGGGCGCCTCAAAAt < 1:1537239/150‑1 (MQ=255) tCGCCGAACTGGCAGGTATTTTTGGCCAGGCCTCCAGCCTGGAGGCGTATTTCTGGCAAATGGGGTTGGACGGGACCGTGTAAACCGCCGTGGGCTGGGTGATTACTACCCAGCCCAGGACCGCTTTGGTGCATGGGCGCCTCAAAATaa < 1:121460/150‑1 (MQ=255) tCGCCGAACTGGCAGGGATTTTTGGCCAGGCCTCCAGCCTGGAGGCGGATTTCTGGCAAATGGGGTTGGACGGGACCGTGTAAACCGCCGTGGGCTGGGTGATTACTACCCAGCCCAGGACCGCTTTGGTGCATGGGCGCCTCAAAATaa < 2:1825675/150‑1 (MQ=255) tCGCCGAACTGGCAGGGATTTTTGGCCAGGCCTCCAGCCTGGAGGCGGATTTCTGGCAAATGGGGTTGGACGGGACCGTGTAAACCGCCGTGGGCTGGGTGATTACTACCCAGCCCAGGACCGCTTTGGTGCATGGGCGCCTCAAAATaa < 2:549091/150‑1 (MQ=255) gCCGAACTGGCAGGGATTTTTGGCCAGGCCTCCAGCCTGGAGGCGGATTTCTGGCAAATGGGGTTGGACGGGACCGTGTAAACCGCCGTGGGCTGGGTGATTACTACCCAGCCCAGGACCGCTTTGGTGCATGGGCGCCTCAAAATAAgt > 2:3044403/1‑150 (MQ=255) gCCGAACTGGCAGGGATTTTTGGCCAGGCCTCCAGCCTGGAGGCGGATTTCTGGCAAATGGGGTTGGACGGGACCGTGTAAACCGCCGTGGGCTGGGTGATTACTAACCACCCCACGACCCCATTGGTGCAAGGGCGCCACAAAATAAgt > 2:3044440/1‑150 (MQ=255) ccGAACTGGCAGGGATTTTTGGCCAGGCCTCCAGCCTGGAGGCGGATTTCTGGCAAATGGGGTTGGACGGGACCGTGTAAACCGCCGTGGGCTGGGTGATTACAACCCAGCCCAGGACCGCTTTGGTGCATGGGCGCCTCAAAATAAgtc > 2:3889759/1‑150 (MQ=255) cTGGCAGGGATTTTTGGCCAGGCCTCCAGCCTGGAGGCGGATTTCTGGCAAATGGGGTTGGACGGGACCGTGTAAACCGCCGTGGGCTGGGTGATTACTACCCAGCCCAGGACCGCTTTGGTGCATGGGCGCCTCAAAATAAGTCGTccc < 2:5146834/150‑1 (MQ=255) tGGCAGGGATTTTTGGCCAGGCCTCCAGCCTGGAGGCGGATTTCTGGCAAATGGGGTTGGACGGGACCGTGTAAACCGCCGTGGGCTGGGTGTTTACTAACCAGCCCACGACCCCATTTGTGGATTGGGGCCGCCAAAAAAATGGTACCg > 1:2644415/1‑150 (MQ=255) gCAGGGATTTTTGGCCAGGCCTCCAGCCTGGAGGCGGATTTCTGGCAAATGGGGTTGGACGGGACCGTGTAAACCGCCGTGGGCTGGGTGATTACTACCCAGCCCAGGACCGCTTTGGTGCATGGGCGCCTCAAAATAAGTCGTCCCGca < 2:3329558/150‑1 (MQ=255) gCAGGGATTTTTGGCCAGGCCTCCAGCCTGGAGGCGGATTTCTGGCAAATGGGGTTGGACGGGACCGTGTAAACCGCCGTGGGCTGGGTGATTACTAACCAGCCCCGGACCCCTTTGGTGCATGGGCGCCACAAAATAAGTCGGCCCGcc > 2:4361824/1‑149 (MQ=255) gCAGGGATTTTTGGCCAGGCCTCCAGCCTGGAGGCGGATTTCTGGCAAATGGGGTTGGAAGGGACCGTGTAAACCGCCGTGGGCTGGGTGATTAATAACCAGCCCAGGACCGCGTTGGTGCAAGGGCGCCGCAAAATAAGTAGTACCCca > 1:4088374/1‑150 (MQ=255) aGGGATTTTTGGCCAGGCCTCCAGCCTGGAGGCGGATTTCTGGCAAATGGGGTTGGACGGGACCGTGTAAACCGCCGTGGGCTGGGTGATTACTACCCAGCCCAGGACCGCTTTGGTGCATGGGCGCCTCAAAATAAGTCGTCCCGcaca > 2:5137513/1‑150 (MQ=255) aGGGATTTTTGGCCAGGCCTCCAGCCTGGAGGCGGATTTCTGGCAAATGGGGTTGGACGGGACCGTGTAAACCGCCGTGGGCTGGGTGATTACTACCCAGCCCAGGACCGCGTTGGTGCATTGGCGCCGCAAAAAAAGTCGTCCCGccca > 2:2088909/1‑150 (MQ=255) aGGGATTTTTGGCCAGGCCTCCAGCCTGGAGGCGGATTTCTGGCAAATGGGGTTGGACGGGACCGTGTAAACCGCCGTGGGCTGGGTGAGTACTACCCAGCCCAGGACCGCTTTGGTGCATGGGCGCCTCAAAATAAGTCGGCCCGcacc > 2:4551377/1‑149 (MQ=255) ggATTTTTGGCCAGGCCTCCAGCCTGGAGGCGGATTTCTGGCAAATGGGGTTGGACGGGACCGTGTAAACCGCCGTGGGCTGGGGGATTAATACCCACCCCAGGCCCGCGTTGGTGCATGGGCGCCGCCAAATAAGTACTCCCGCacacg > 1:3210328/1‑149 (MQ=255) gATTTTTGGCCAGGCCTCCAGCCTGGAGGCGGATTTCTGGCAAATGGGGTTGGACGGGACCGTGTAAACCGCCGTGGGCTGGGTGATTAATACCCCGCCCACGACCGCGTTTGTGCCTGGGCGCCGCCAAATAAGTCGTACCCCacacac > 1:5051783/1‑148 (MQ=255) aTTTTTGGCCAGGCCTCCAGCCTGGAGGCGGATTTCTGGCAAATGGGGTTGGACGGGACCGTGTAAACCGCCGTGGGCTGGGTGATTACTACCCAGCCCAGGACCGCTTTGGTGCATGGGCGCCTCAAAATAAGTCGTCCCGCACACTcc < 1:1621689/150‑1 (MQ=255) tttttGGCCAGGCCTCCAGCCTGGAGGCGGATTTCTGGCAAATGGGGTTGGACGGGACCGTGTAAACCGCCGTGGGCTGGGTGATTACTACCCAGCCCAGGACCGCTTTGGTGCATGGGCGCCTCAAAATAAGTCGTCCCGCACACTCCa < 1:5065040/150‑1 (MQ=255) tttttGGCCAGGCCTCCAGCCTGGAGGCGGATTTCTGGCAAATGGGGTTGGACGGGACCGTGTAAACCGCCGTGGGCTGGGTGATTACTACCCAGCCCAGGACCGCTTTGGTGCATGGGCGCCTCAAAATAAGTCGTCCCGCACACTCCa < 1:4006321/150‑1 (MQ=255) tttttGGCCAGGCCTCCAGCCTGGAGGCGGATTTCTGGCAAATGGGGTTGGACGGGACCGTGTAAACCGCCGTGGGCTGGGTGATTACTACCCAGCCCAGGACCGCTTTGGTGCATGGGCGCCTCAAAATAAGTCGTCCCGCACACTCCa < 2:1593266/150‑1 (MQ=255) tttttGGCCAGGCCTCCAGCCTGGAGGCGGATTTCTGGCAAATGGGGTTGGACGGGACCGTGTAAACCGCCGTGGGCTGGGTGATTACTACCCAGCCCACGACCGCTTTGGTGCATGGGCGCCACAAAATAAGTCGTCCCGCACACACCa > 2:4366578/1‑150 (MQ=255) tGGCCAGGCCTCCAGCCTGGAGGCGGATTTCTGGCAAATGGGGTTGGACGGGACCGTGTAAACCGCCGTGGGCTGGGTGATTACTACCCAGCCCAGGACCGCTTTGGTGCATGGGCGCCTCAAAATAAGTCGTCCCGCACACTCCAGATc < 1:2716804/150‑1 (MQ=255) gCCAGGCCTCCAGCGTGGTGGGGGTTTTATGGCAAATGGGTTTGGACGGGACCGTGTAACCCGCCGTGGGCTGGGTGATTACTCCCCCGCCCAGGACCGCTTTGGTGCATGGGCGCCTCAAAATAAGTCGTCCCGCACACTCCAGATCGt < 1:2589045/150‑1 (MQ=255) gCCAGGCCTCCAGCCTGGAGGCGGATTTCTGGCAAATGGGGTTGGACGGGACCGTGTAAACCGCCGTGGGCTGGGTGATTACTACCCAGCCCAGGACCGCTTTGGTGCATGGGCGCCTCAAAATAAGTCGTCCCGCACACTCCAGATCGt < 1:2224849/150‑1 (MQ=255) cAGGCCTCCAGCCTGGAGGCGGATTTCTGGCAAATGGGGTTGGACGGGACCGTGTAAACCGCCGTGGGCTGGGTGATTACTACCCAGCCCAGGACCGCTTTGGTGCATGGGCGCCTCAAAATAAGTCGTCCCGCACACTCCAGATCGTCa < 2:3373037/150‑1 (MQ=255) cAGGCCTCCAGCCTGGAGGCGGATTTCTGGCAAATGGGGTTGGACGGGACCGTGTAAACCGCCGTGGGCTGGGTGATTACTACCCAGCCCAGGACCGCTTTGGTGCATGGGCGCCTCAAAATAAGTCGTCCCGCACACTCCAGATCGTCa < 2:3570686/150‑1 (MQ=255) cAGGCCTCCAGCCTGGAGGCGGATTTCTGGCAAATGGGGTTGGACGGGACCGTGTAAACCGCCGTGGGCTGGGTGATTACTACCCAGCCCAGGACCGCTTTGGTGCATGGGCGCCTCAAAATAAGTCGTCCCGCACACTCCAGATCGTCa < 2:3570794/150‑1 (MQ=255) aGGCCTCCAGCCTGGAGGCGGATTTCTGGCAAATGGGGTTGGACGGGACCGTGTAAACCGCCGTGGGCTGGGTGATTACTACCCAGCCCAGGACCGCTTTGGTGCATGGGCGCCTCAAAATAAGTCGTCCCGCACACTCCACATCGGCAg > 2:3756491/1‑150 (MQ=255) cTCCAGCCTGGAGGCGGATTTCTGGCAAATGGGGTTGGACGGGACCGTGTAAACCGCCGTGGGGTGGGTGATTACTAACCAGCCCCGGACCGCTTTGGTGCCTGGGCGCCGGAAAATAAGTCGTCCCCCCCACACCAGCTCGTCAGAtag > 2:2434931/1‑148 (MQ=255) cTCCAGCCTGGAGGCGGATTTCTGGCAAATGGGGTTGGACGGGACCGTGTAAACCGCCGTGGGCTGGGTGGTTACTAACCCGCCCAGGACCGCGTTGGTGCATGGGCGCCTCAAAATAAGTCGTCCCCCACACGCCAGATCGTCAGATCg > 2:2434942/1‑150 (MQ=255) ccAGCCTGGAGGCGGATTTCTGGCAAATGGGGTTGGACGGGACCGTGTAAACCGCCGTGGGCTGGGTGATTACTACCCAGCCCAGGACCGCTTTGGTGCATGGGCGCCTCAAAATAAGTCGTCCCGCACACTCCAGATCGTCAGATCGCa < 2:2222816/150‑1 (MQ=255) aGCCTGGAGGCGGATTTCTGGCAAATGGGGTTGGACGGGACCGTGTAAACCGCCGTGGGCTGGGTGATTACTACCCAGCCCAGGACCGCTTTGGTGCATGGGCGCCTCAAAATAAGTCGTCCCGCACACTCCAGATCGTCAGATCGCAGc < 2:5308521/150‑1 (MQ=255) ccTGGAGGCGGATTTCTGGCAAATGGGGTTGGACGGGACCGTGTAAACCGCCGTGGGCTGGGTGATTACTACCCACCCCAGGACCCCGTTGGTGCCTGGGCGCCGCAAAAAAAGTCGTCCCGCACACACCACATCGGCACATCGCAGcgt > 2:2457147/1‑148 (MQ=255) tGGAGGCGGATTTCTGGCAAATGGGGTTGGACGGGACCGTGTAAACCGCCGTGGGCTGGGTGATTACTACCCAGCCCAGGACCGCTTTGGTGCATGGGCGCCTCAAAATAAGTCGTCCCGCACACTCCAGATCGTCAGATCGCAGCTTTa < 1:4721816/150‑1 (MQ=255) ggCGGATTTCTGGCAAATGGGGTTGGACGGGACCGTGTAAACCGCCGTGGGCTGGGTGATTACTACCCAGCCCAGGACCGCTTTGGTGCATGGGCGCCTCAAAATAAGTCGTCCCGCACACTCCAGATCGTCAGATCGCAGCTTTAAtgt < 1:4773833/150‑1 (MQ=255) ggCGGATTTCTGGCAAATGGGGTTGGACGGGACCGTGTAAACCGCCGTGGGCTGGGTGATTACTACCCAGCCCAGGACCGCTTTGGTGCATGGGCGCCTCAAAATAAGTCGTCCCGCACACTCCAGATCGTCAGATCGCAGCTTTAAtgt < 1:2532854/150‑1 (MQ=255) cGGATTTCTGGCAAATGGGGTTGGACGGGACCGTGTAAACCGCCGTGGGCTGGGTGATTACTACCCAGCCCAGGACCGCTTTGGTGCATGGGCGCCTCAAAATAAGTCGTCCCGCACACTCCAGATCGTCAGATCGCAGCTTTAATGTGc < 2:2163584/150‑1 (MQ=255) ttCTGGCAAATGGGGTTGGACGGGACCGTGTAAACCGCCGTGGGCTGGGTGATTACTACCCAGCCCAGGACCGCTTTGGTGCATGGGCGCCTCAAAATAAGTCGTCCCGCACACTCCAGATCGTCAGATCGCAGCTTTAATGTGCACAGt < 2:4262659/150‑1 (MQ=255) tGGCAAATGGGGTTGGACGGGACCGTGTAAACCGCCGTGGGCTGGGTGTTTAAAAACCACCCCAGGACCCCTTTTGTGCATGGGCGCCACAAAAAAAGTCGTCCCCCACACACCACAAAGGCAGAAAGCAGCTTTAATTTGCACACTGCa > 1:4541730/1‑150 (MQ=255) tGGCAAATGGGGTTGGACGGGACCGTGTAAACCGCCGTGGGCTGGGTGGTTACTACCCACCCCAGGACCGCGTTGGTGCAAGGGCGCCGCAAAAAAAGTCGTCCCGCCCACTCCCGATCGTCAGATCGCAGCATTAAAGTGCACAGTGCa > 2:5379526/1‑150 (MQ=255) gCAAATGGGGTTGGACGGGACCGTGTAAACCGCCGTGGGCTGGGTGATTACTACCCAGCCCAGGACCGCTTTGGTGCATGGGCGCCTCAAAATAAGTCGTCCCGCACACTCCAGATCGTCAGATCGCAGCTTTAATGTGCACAGTGCata < 1:2335575/150‑1 (MQ=255) cAAATGGGGTTGGACGGGACCGTGTAAACCGCCGTGGGCTGGGTGATTACTACCCAGCCCAGGACCGCTTTGGTGCATGGGCGCCTCAAAATAAGTCGTCCCGCACACTCCAGATCGTCAGATCGCAGCTTTAATGTGCACAGTGCatat < 1:3813252/150‑1 (MQ=255) aaaTGGGGTTGGACGGGACCGTGTAAACCGCCGTGGGCTGGGTGATTACTACCCACCCCAGGACCCCTTTGGTGCATGGGCGCCTCAAAATAAGTCGTCCCCCACACACCACATAGTACGATCGCAGCTTTAATTTGAACAGTGCATATg > 2:5031832/1‑150 (MQ=255) aaaGGGGGTTGGACGGGACCGTGTAAACCGCCGTGGGCTGGGTGATTACGACCCAGCCCAGGACCGCTTTGGTGCATGGGCGCCTCAAAATAAGTCGTCCCGCACACTCCAGATCGTCAGATCGCAGCTTTAATGTGCACAGTGCATATg < 1:1616160/150‑1 (MQ=255) gTTGGACGGGACCGTGTAAACCGCCGTGGGCTGGGTGATTACTACCCAGCCCAGGACCGCTTTGGTGCATGGGCGCCTCAAAATAAGTCGTCCCGCACACTCCAGATCGTCAGATCGCAGCTTTAATGTGCACAGTGCATATGGATTTCt < 2:582667/150‑1 (MQ=255) gTTGGACGGGACCGTGTAAACCGCCGTGGGCTGGGTGATTACTACCCAGCCCAGGACCGCTTTGGTGCATGGGCGCCTCAAAATAAGTCGTCCCGCACACTCCAGATCGTCAGATCGCAGCTTTAATGTGCACAGTGCATATGGATTTCt < 2:3203162/150‑1 (MQ=255) gTTGGACGGGACCGTGTAAACCGCCGTGGGCTGGGTGATTACTACCCAGCCCAGGACCGCTTTGGTGCATGGGCGCCGCAAAATAAGTCGTCCCGCACACACCAGATAGTCAGATCGCAGCTTTAATGTGCACAGTGCCTATGGATTTCt > 2:4209095/1‑150 (MQ=255) gTTGGACGGGACCGTGTAAACCGCCGTGGGCGGGGTGATTAATAACCCGCCCCGGACCCCGTTGGTGCATGGGCGCCGCAAAATAAGTCGTCCCCCACACACCAGATCGTCAGATCGCAGCTTTAATTTGCAAAGTGCATATGGAtttgt > 2:4455548/1‑148 (MQ=255) tGGACGGGACCGTGTACACCGCCGTGGGCTGGGTGATTACTACCCAGCCCAGGACCGCTTTGGTGCATGGGCGCCTCAAAATAAGTCGTCCCGCACACTCCAGATCGTCAGATCGCAGCTTTAATGTGCACAGTGCATATGGATTTCTgg < 2:922942/150‑1 (MQ=255) tGGACGGGACCGTGTAAACTGCCGTGGACTGGGTGATTACTACCCAGCCCAGGACCGCTTTGGTGCATGGGCGCCTCAAAATAAGTCGTCCCGCACACTCCAGATCGTCAGATCGCAGCTTTAATGTGCACAGTGCATATGGATTTCTgg < 1:1458655/150‑1 (MQ=255) tGGACGGGACCGTGTAAACCGCCGTGGGCTGGGTGATTACTACCCAGCCCAGGACCGCTTTGGTGCATGGGCGCCTCAAAATAAGTCGTCCCGCACACTCCAGATCGTCAGATCGCAGCTTTAATGTGCACAGTGCATATGGATTTCTgg < 1:4378800/150‑1 (MQ=255) cGGGACCGTGTAACCCGCCGTGGGCTGGGTGA‑TACTACCCAGCCCAGGACCGCTTTGGTGCATGGGCGCCTCAAAATAAGTCGTCCCGCACACTCCAGATCGTCAGATCGCAGCTTTAATGTGCACAGTGCATATGGATTTCTGGGCGaa < 2:4016195/150‑1 (MQ=255) gggACCGTGTAAACCGCCGTGGGCTGGGTGATTACTACCCAGCCCAGGACCGCTTTGGTGCATGGGCGCCTCAAAATAAGTCGTCCCGCACACTCCAGATCGTCAGATCGCAGCTTTAATGTGCACAGTGCATATGGATTTCTGGGCGaa < 1:2119547/150‑1 (MQ=255) ggACCGTGTAAACCGCCGTGGGCTGGGTGATTACTACCCAGCCCAGGACCGCTTTGGTGCATGGGCGCCTCAAAATAAGTCGTCCCGCACACTCCAGATCGTCAGATCGCAGCTTTAATGTGCACAGGGCATATGGATTTCTGGGCGAAc < 1:67320/150‑1 (MQ=255) gACCGTGTAAACCGCCGTGGGGTGGGTGATTACTACCCAGCCCAGGCCCCCATTGGTGCAAGGGCGCCTCAAAAAAAGTCGTACCGCCCACACCACATCGTAAGATAGCCGCTTTAAGGTTCACAGTGCAAATGGATTTCTGGGCgcccc > 2:5470902/1‑146 (MQ=255) aCCGTGTAAACCGCCGTGGGCGGGGTGTTTACTAACCACCCCAGGACCCCGTTGGTGCATGGGCGCCTCAAAAAAAGTCGTCCCGCCCACGACACATCGTCAGATCGCAGCAGTAATTTGCACAGTGCATATGGATTTCTGGGCGAACAg > 2:667863/1‑150 (MQ=255) gccgTGGGCTGGGTGATTACTACCCAGCCCAGGACCGCTTTGGTGCATGGGCGCCTCAAAATAAGTCGTCCCGCACACTCCAGATCGTCAGATCGCAGCTTTAATGTGCACAGTGCATATGGATTTCTGGGCGAACAGCCCGATttcttc < 1:1001902/150‑1 (MQ=255) gccgTGGGCTGGGTGATTAATAACCAGCCCAGGACCGCTTTTGTGCATGGGCGCCTCAAAATAAGTCGTACCCCACACACCAGATCGTCAGATAGCAGCTTTAAAGTGCCAAGTGCATATGGATTTATGGGCGAACAGCCCGAAttcttc > 2:4969824/1‑150 (MQ=255) ccgTGGGCTGGGTGATGACGACCCAGCCCAGGCCCGCTTGGGTGCAGGGGCGCCTCAAAAGAAGTCGTCCCGCACACTCCAGATCGTCAGCTCGCAGCTGTCATGTGCACAGTGCATATGGATTTCTGGGCGACCAGCCCGATTTCTTcc < 2:4995452/150‑1 (MQ=255) cgTGGGCTGGGTGATTACTACCCAGCCCAGGACCGCTTTGGTGCATGGGCGCCTCAAAATAAGTCGTCCCGCACACTCCAGATCGTCAGATCGCAGCTTTAATGTGCACAGTGCATATGGATTTCTGGGCGAACAGCCCGATTTCTTcc < 2:1497057/149‑1 (MQ=255) gTGGGCTGGGTGATTACTACCCAGCCCAGGACCGCTTTGGTGCATGGGCGCCTCAAAATAAGTCGTCCCGCACACTCCAGATCGTCAGATCGCAGCTTTAATGTGCACAGTGCATATGGATTTCTGGGCGAACAGCCCGATTTCTTCCgg < 1:4168154/150‑1 (MQ=255) ctGGGCTGGGTAGTAATCACCCAGCCCAGGACCGCTTTGGTGCATGGGCGCCTCAAAACAAGTCGTCCCGCACACTCCAGATCGTCAGATCGCAGCTTTAATGTGCACAGTGCATATGGATTTCTGGGCGAACAGCCCGATTTCTTCCgg > 1:2250763/2‑150 (MQ=255) tGGGCTGGGTAGTAATCACCCAGCCCAGGACCGCTTTGGTGCATGGGCGCCTCAAAATAAGTCGTCCCGCACACTCCAGATCGTCAGATCGCAGCTTTAATGTGCACAGTGCata > 2:4700990/1‑115 (MQ=255) tGGGTGATTACTACCCAGCCCAGGACCGCTTTGGTGCATGGGCGCCTCAAAATAAGTCGTCCCGCACACTCCAGATCGTCAGATCGCAGCTTTAATGTGCACAGTGCATATGGATTTCTGGGCGAACAGCCCGATTTCTTCCGGGTggcg > 1:3009556/1‑150 (MQ=255) ggTGATTACTACCCAGCCCAGGACCGCTTTGGTGCATGGGCGCCTCAAAATAAGTCGTCCCGCACACTCCAGATCGTCAGATCGCAGCTTTAATGTGCACAGTGCATATGGATTTCTGGGCGAACAGCCCGATTTCTTCCGGGTggcggc < 1:4617064/150‑1 (MQ=255) gTGATTACTACCCAGCCCAGGACCGCTTTGGTGCATGGGCGCCTCAAAATAAGTCGTCCCGCACACTCCAGATCGTCAGATCGCAGCTTTAATGTGCACAGTGCATATGGATTTCTGGGCGAACAGCCCGATTTCTTCCGGGTGgcggcg > 2:1252859/1‑150 (MQ=255) gTGATTACTACCCAGCCCAGGACCGCTTTGGTGCATGGGCGCCTCAAAATAAGTCGTCCCGCACACTCCAGATCGTCAGATCGCAGCTTTAATGTGCACAGTGCATATGGATTTCTGGGCGAACAGCCCGATTTCTTCCGGGTGgcggcg > 2:732522/1‑150 (MQ=255) gATTACTACCCAGCCCAGGACCGCTTTGGTGCATGGGCGCCTCAAAATAAGTCGTCCCGCACACTCCAGATCGTCAGATCGCAGCTTTAATGTGCACAGTGCATATGGATTTCTGGGCGAACAGCCCGATTTCTTCCGGGTGGCGGCGCa > 1:1164035/1‑150 (MQ=255) | GCAAGCACCTGGATGAACTGGCCGCGCGCAGCATGACCGAGCAGCGGTTCGCCGAACTGGCAGGGATTTTTGGCCAGGCCTCCAGCCTGGAGGCGGATTTCTGGCAAATGGGGTTGGACGGGACCGTGTAAACCGCCGTGGGCTGGGTGATTACTACCCAGCCCAGGACCGCTTTGGTGCATGGGCGCCTCAAAATAAGTCGTCCCGCACACTCCAGATCGTCAGATCGCAGCTTTAATGTGCACAGTGCATATGGATTTCTGGGCGAACAGCCCGATTTCTTCCGGGTGGCGGCGCA > NC_002947/3620299‑3620596 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |