Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029472,284,7400GC41.2% 437.2 / inf 591intergenic (‑167/+62)PP_2010/PP_2011cytochrome b561/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base G (161/186);  new base C (139/104);  total (300/291)
Fisher's exact test for biased strand distribution p-value = 1.20e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-02
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 610 total aligned reads displayed.

CAGGTCTGAATGGCGCTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACA‑GTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGGAGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCATCGGCATCAGGCACCAGT  >  NC_002947/2284590‑2284889
                                                                                                                                                       |                                                                                                                                                     
    tCTGAATGGCGCTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACAGCACA‑GTCTTGGAAg                                                                                                                                                    >  1:2808716/1‑150 (MQ=255)
     cTGAATGGCGCTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGCCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACA‑GTCTTGGAAGc                                                                                                                                                   <  1:6137214/150‑1 (MQ=255)
       gAATGGCGCTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACA‑GTCTTGGAAGCCt                                                                                                                                                 <  1:9110439/150‑1 (MQ=255)
           ggCGCTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACA‑GGCTTCCAAGACTGTGc                                                                                                                                             <  1:14134484/150‑1 (MQ=255)
            gcgcTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACA‑GTCTTGGAAGCCTGTGCa                                                                                                                                            <  2:17517059/150‑1 (MQ=255)
            gcgcTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACA‑GGCTTCCAAGACTGTGCa                                                                                                                                            <  1:6915409/150‑1 (MQ=255)
            gcgcTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACA‑GGCTTCCAAGACTGTGCa                                                                                                                                            <  1:16733981/150‑1 (MQ=255)
              ggtctTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCGCCCACAGGCCAACGTCAAC‑GTCTTGGTAGGCTGTGCAgg                                                                                                                                          >  1:12854364/3‑149 (MQ=255)
              gcTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACA‑GTCTTGGAAGCCTGTGCAGt                                                                                                                                          <  1:18602511/150‑1 (MQ=255)
              gcTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACA‑GTCTTGGAAGCCTGTGCAGt                                                                                                                                          >  1:7978692/1‑150 (MQ=255)
               ctctTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACA‑GTCTTGGAAGCCTGTGCAGtt                                                                                                                                         <  2:1799169/150‑1 (MQ=255)
               ctctTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACA‑GTCTTGGAAGCCTGTGCAGtt                                                                                                                                         <  2:4922488/150‑1 (MQ=255)
               ctctTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACA‑GTCTTGGAAGCCTGTGCAGtt                                                                                                                                         <  1:4211677/150‑1 (MQ=255)
                tctTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACAGCACA‑GTCTTGGAAGCCGGTGCAGTTg                                                                                                                                        >  1:13729707/1‑150 (MQ=255)
                tctTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGACACGCCCGCTCCCACAGTCCAACTGCACA‑GTCTTGGAAGCCTGTGCAGTTg                                                                                                                                        <  1:2012081/150‑1 (MQ=255)
                  ttGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCCACTGCACA‑GTCTTGGAAGCCTGTGCAGTTGGa                                                                                                                                      >  2:5368588/1‑150 (MQ=255)
                  ttGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACA‑GTCTTGGAAGCCTGTGCAGTTGGa                                                                                                                                      <  2:642110/150‑1 (MQ=255)
                        gcgcTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACAGCCAA‑GTCATGGTAGCCGGTGCAGTTGGACGGTgg                                                                                                                                >  1:8922941/1‑150 (MQ=39)
                          gcTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACA‑GGCTTCCAAGACtgtg                                                                                                                                              >  2:17183635/1‑134 (MQ=255)
                          gcTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACA‑GGCTTCCAAGACTGTGCAGTTGGACTGTGGGa                                                                                                                              <  2:9716437/150‑1 (MQ=255)
                            tCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACA‑GTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAGc                                                                                                                            <  1:1180699/150‑1 (MQ=255)
                            tCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGTCCAACTGCACA‑GGCTTCCAAGACTGTGCAGTTGGACTGTGGGAGc                                                                                                                            <  1:15260945/150‑1 (MQ=21)
                              aGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACA‑GTCTTGGAAGCCTGTGCAGTTGGACTGTGGGa                                                                                                                              <  1:3872385/146‑1 (MQ=255)
                                  gTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACA‑GTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAGCGGGCGt                                                                                                                      <  1:10912488/150‑1 (MQ=255)
                                     aTTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACA‑GTCTTGGAAGCCTGTGCAGTTGGa                                                                                                                                      >  1:4672871/1‑131 (MQ=255)
                                      ttttAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGTCCAACTGCACA‑GTCTTGGAAGCCTGTGCAGtt                                                                                                                                         >  2:15543153/1‑127 (MQ=255)
                                           ctGGCTACCGGAAACAGATCTTTGCGCCTGGTGTGTTAAAATTGTGTGGCCAGCCACGGGCCTCTGCGCGGGCACGCCCGCCCCCACAGTCCACCTGCACA‑GTCTTGGAAGCCTGTGCTTTTGGCGTGTGGGAGCGGGCGTGCCCGCGaa                                                                                                             <  1:15565919/149‑1 (MQ=255)
                                              gCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACA‑GTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAggg                                                                                                          <  2:9170245/150‑1 (MQ=255)
                                              gCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCCCCCACAGTCCAACTGCACA‑GTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAggg                                                                                                          <  1:16358119/150‑1 (MQ=255)
                                                tACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACA‑GTCTTGGAAGGCTGTGGAGTTGGACTGTGGGTGCGGGCGTGCCCGCGAAggggg                                                                                                        >  2:2640259/1‑149 (MQ=255)
                                                tACCGGAAACAGATCTTTGCGCCAGGTCTGGGAAAAATGTGTTGCCAGCCACCGGCCCCGTCGCTGGCACGCCCGCTCCCACAGTCCAACGGCACA‑GTCTTGGACGCCTGGGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGc                                                                                                        <  2:13074429/150‑1 (MQ=25)
                                                  ccGGACACAGATCTGTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACA‑GTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCg                                                                                                      <  2:10553135/150‑1 (MQ=255)
                                                   cGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACA‑GTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCgg                                                                                                     >  2:1225090/1‑150 (MQ=255)
                                                    ggAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACA‑GTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGGa                                                                                                    >  2:11017891/1‑150 (MQ=255)
                                                     gAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACA‑GGCTTCCAAGACTGTGCAGtt                                                                                                                                         >  2:15971690/1‑112 (MQ=21)
                                                     gAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACA‑GGCTTCCAAGACTGTGCAGtt                                                                                                                                         <  1:6616452/112‑1 (MQ=21)
                                                     gAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACA‑GGCTTCCAAGACTGTGCAGtt                                                                                                                                         >  2:6616452/1‑112 (MQ=21)
                                                       accAGATCTGGGCGCCAGGTCGGTGAACCCTGTGGGGCCAGCCCCCGGCCTCGTCGCGGGCCCGCCCGCTCCCACAGTCCACCTGCACC‑GTCTTGGAAGCCTGTGCAGTGGGACTGTGGGAGCGGGCGTGCCCGCGCAGGGGCCGGAGCa                                                                                                 <  2:17677881/148‑1 (MQ=18)
                                                         cAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCGCCCCCCCTCCAACAGCACACGGGTTGG‑AGCCGGTGGCGGTGGGCGGGGGGGGCGGGGGGGCCCGCGGCGGGGGCGGCGCCgg                                                                                               >  1:15952291/1‑150 (MQ=255)
                                                          aGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACA‑GGCTTCCAAGACTGTGc                                                                                                                                             >  1:6379380/1‑103 (MQ=21)
                                                           gATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACA‑GTCTTGGAAGCCTGTGCAGTTGGACTGTGGGa                                                                                                                              <  1:11549146/117‑1 (MQ=255)
                                                                      cAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACA‑CTCTTGGAAGCCGGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGGAGCAGGCGACATCAGTTAc                                                                                  >  2:1824429/1‑150 (MQ=255)
                                                                        ggTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACA‑GTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGGAGCAGGCGACATCAGTTACCg                                                                                <  1:12032062/150‑1 (MQ=255)
                                                                            tgtgAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACA‑GTCTTGGAAGCCTGTGCAGTTGGACtgt                                                                                                                                  <  2:13504754/96‑1 (MQ=255)
                                                                              tgAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCCACGGCACA‑GTCTTGGAAGCCGGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGGAGCAGGCGACATCAGTTGCCGGGCAGa                                                                          >  2:16562195/1‑150 (MQ=255)
                                                                                  aaaTGTGGTGCCAGCCACCGGCCTCTGCGCTGGCACGCCCGCTCCCACCGTCCAACTGCCCA‑GTCTTGGAAGCCTGTGCAGTTGGCCTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGGAGCAGGCGACATCAGTTACCGGGCAGATAgg                                                                      <  2:13252711/150‑1 (MQ=255)
                                                                                    aTGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACA‑GTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGGAGCAGGCGACATCAGTTACCGGGCAGATAGGGc                                                                    <  2:10207520/150‑1 (MQ=255)
                                                                                        gtTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACA‑GTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGGAGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGt                                                                <  2:7522206/150‑1 (MQ=255)
                                                                                              agcccCCGGCCTCTCCGCTGGCACGCCCGCTCCCACTGTCCAACGGCACT‑GTCTTGGATGCCTGTGCAGTTGGACTGTGGGCGCGGGCGTGCCCGCGAAGGGGCCGGAGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATcac                                                          <  1:344053/150‑1 (MQ=255)
                                                                                                    cGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACA‑GTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGGAGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACccacca                                                    <  1:16986050/150‑1 (MQ=255)
                                                                                                             cGCTGGCACGCCCGCTCCCACAGTCCAACTGCACA‑GTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGGAGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACAccc                                           <  2:1858917/150‑1 (MQ=255)
                                                                                                                 ggCACGCCCGCTCCCACAGTCCAACTGCACA‑GTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGGAGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTc                                       <  2:11426699/150‑1 (MQ=255)
                                                                                                                            tCCCACAGTCCAACTGCACA‑GGCTTCCAAGACTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGGAGCAGGCGACATCa                                                                                       >  1:10157126/1‑91 (MQ=14)
                                                                                                                            tCCCACAGTCCAACTGCACA‑GGCTTCCAAGACTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGGAGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGa                                                  >  2:16899860/1‑128 (MQ=255)
                                                                                                                               caccGTCCAACTGCCCA‑GTCTTGGAAGCCTGTGCTGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGGAGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAgg                         <  1:242691/150‑1 (MQ=255)
                                                                                                                               cacaGTCCAACTGCACA‑GTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGGAGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGtcatc                                                            >  2:62313/1‑115 (MQ=255)
                                                                                                                               cacaGTCCAACTGCACA‑GTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGGAGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAgg                         >  1:9922115/1‑150 (MQ=255)
                                                                                                                               cacaGTCCAACTGCACA‑GGCTTCCAAGACTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGGAGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTg                                     <  1:8225059/138‑1 (MQ=255)
                                                                                                                               cacaGTCCAACTGCACA‑GGCTTCCAAGACTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGGAGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTg                                     >  2:8225059/1‑138 (MQ=255)
                                                                                                                                acaGTCCAACTGCACA‑GGCTTCCAAGACTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGGAGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGc                        >  2:2241215/1‑150 (MQ=255)
                                                                                                                                 caGTCCAACTGCACA‑GTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGGAGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCAGCCAGGCa                       >  1:17322215/1‑150 (MQ=255)
                                                                                                                                       aaCTGCACA‑GTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGGAGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCTGAAACACCCGTTCt                                      >  1:8641774/1‑129 (MQ=255)
                                                                                                                                       aaCTGCACA‑GTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGGAGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGaaa                                                >  1:1615382/1‑119 (MQ=255)
                                                                                                                                       aaCTGCACA‑GTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGGAGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCATCg                 >  2:15078059/1‑150 (MQ=255)
                                                                                                                                       aaCTGCACA‑GTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGGAGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCATCg                 >  2:15335941/1‑150 (MQ=255)
                                                                                                                                       aaCTGCACA‑GTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCAGCGAAGAGGCCGGAGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCATCg                 >  1:13456610/1‑150 (MQ=255)
                                                                                                                                       aaCTGCACA‑GGCTTCCAAGACTGTGCCGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGGAGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCATCg                 >  1:3919334/1‑150 (MQ=37)
                                                                                                                                       aaCTGCACA‑GGCTTCCAAGACTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGGAGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCATc                  >  2:16182017/1‑149 (MQ=255)
                                                                                                                                       aaCTGCACA‑GGCTTCCAAGACTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGGAGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCATCg                 >  2:938555/1‑150 (MQ=255)
                                                                                                                                       aaCTGCACA‑GGCTTCCAAGACTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGGAGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCATCg                 >  1:9539684/1‑150 (MQ=255)
                                                                                                                                       aaCTGCACA‑GGCTTCCAAGACTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGGAGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCATCg                 >  2:1458481/1‑150 (MQ=255)
                                                                                                                                       aaCTGCACA‑GGCTTCCAAGACTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGGAGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCATCg                 >  1:13068512/1‑150 (MQ=255)
                                                                                                                                        aCTGCACA‑GTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGGAGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTg                                     <  2:7730099/129‑1 (MQ=255)
                                                                                                                                         cTGCACA‑GGCTTCCAAGACTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGGAGCAGGCGACATCAGTTACCg                                                                                >  2:8743960/1‑85 (MQ=17)
                                                                                                                                          tGCACA‑GTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGGAGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCATCGGCa              >  1:17775746/1‑150 (MQ=255)
                                                                                                                                          tGCACA‑GGCTTCCAAGACTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGGAGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCATCGGCa              >  1:17867798/1‑150 (MQ=255)
                                                                                                                                          tGCACA‑GGCTTCCAAGACTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGGAGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCATCGGCa              >  1:14797621/1‑150 (MQ=255)
                                                                                                                                          tGCACA‑GGCTTCCAAGACTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCAGCGAAGGGGCCGGAGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCa                           >  2:7278773/1‑137 (MQ=25)
                                                                                                                                          tGCACA‑GGCTTCCAAGACTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCAGCGAAGGGGCCGGAGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCATCGGCa              >  1:5416570/1‑150 (MQ=37)
                                                                                                                                          tGCACA‑GGCTTCCAAGACTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCAGCGAAGGGGCCGGAGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCATCGGCa              >  1:7495965/1‑150 (MQ=37)
                                                                                                                                          tGCACA‑GGCTTCCAAGACTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCAGCGAAGAGGCCGGAGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCATCGGCa              >  2:8889622/1‑150 (MQ=37)
                                                                                                                                           gCACA‑GGCTTCCAAGACTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGGAGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCATCGGCAt             <  2:10745043/150‑1 (MQ=255)
                                                                                                                                            caca‑GTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGGAGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATcaccca                                                       <  1:2594001/107‑1 (MQ=255)
                                                                                                                                            caca‑GTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGGAGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCATCGGCATc            >  1:7182611/1‑150 (MQ=255)
                                                                                                                                            caca‑GGCTTCCAAGACTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGGAGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGtcatc                                                            <  2:12182829/102‑1 (MQ=21)
                                                                                                                                            caca‑GGCTTCCAAGACTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGGAGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGcctc                                 >  1:3576832/1‑129 (MQ=255)
                                                                                                                                            caca‑GGCTTCCAAGACTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGGAGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCATCGGCATc            >  1:18374077/1‑150 (MQ=255)
                                                                                                                                            caca‑GGCTTCCAAGACTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCAGCGAAGGGGCCGGAGCAGGCGACATCAGTTACCGGGCAGATa                                                                        <  2:11941555/90‑1 (MQ=17)
                                                                                                                                            caca‑GGCTTCCAAGACTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCAGCGAAGGGGCCGGAGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCATCGGCATc            >  2:5926958/1‑150 (MQ=37)
                                                                                                                                             aca‑GTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGGAGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCATCGGCATCa           >  1:3092525/1‑150 (MQ=255)
                                                                                                                                             aca‑GTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGGAGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCATCGGCATCa           <  1:10237119/150‑1 (MQ=255)
                                                                                                                                             aca‑GGCTTCCAAGACTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGGAGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATcacccac                                                      <  2:14815044/107‑1 (MQ=25)
                                                                                                                                             aca‑GGCTTCCAAGACTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGGAGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCt                                      >  2:3635086/1‑123 (MQ=255)
                                                                                                                                             aca‑GGCTTCCAAGACTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGGAGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTggtgggt                               <  2:6919678/130‑7 (MQ=25)
                                                                                                                                             aca‑GGCTTCCAAGACTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGGAGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCATCGGCATCa           <  2:3218244/150‑1 (MQ=255)
                                                                                                                                              ca‑GTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGGAGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCt                                      >  1:10588172/1‑122 (MQ=255)
                                                                                                                                                  tCTTGGAAGCCTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGGAGCAGGCGACATCAGTTAcc                                                                                 <  1:12250577/76‑1 (MQ=255)
                                                                                                                                                  tCTTGGAAGCCTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGGAGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCATCGGCATCAGGCa       >  2:13814987/1‑150 (MQ=255)
                                                                                                                                                    ttGGAAGCCTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGGAGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCATCGGCATCAGGCAcc     <  1:15078059/150‑1 (MQ=255)
                                                                                                                                                      ggAAGCCTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGGAGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCATCGGCATCAGGCACCAg   >  2:4461813/1‑150 (MQ=255)
                                                                                                                                                       |                                                                                                                                                     
CAGGTCTGAATGGCGCTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACA‑GTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGGAGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCATCGGCATCAGGCACCAGT  >  NC_002947/2284590‑2284889

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑