| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,617,420 | 0 | G | T | 57.1% | ‑4.2 / 10.3 | 22 | intergenic (+18/‑211) | PP_3186/codB | transcriptional regulator/cytosine transporter |
| Reads supporting (aligned to +/- strand): ref base G (0/9); new base T (0/12); total (0/22) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.26e-01 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GAACTGGCCGCGCGCAGCATGACCGAGCAGCGGTTCGCCGAACTGGCAGGGATTTTTGGCCAGGCCTCCAGCCTGGAGGCGGATTTCTGGCAAAT‑GGGGTTGGACGGGACCGTGTAAA‑CC‑GCCGTGGGCTGGGTGATTACTACCCAGCCCAGGACCGCTTTGGTGCATGGGCGCCTCAAAATAAGTCGTCCCGCACACTCCAGATCGTCAGATCGCAGCTTTAATGTGCACAGTGCATATGGATTTCTGGGCGAACAGCCC > NC_002947/3617286‑3617546 | gAACTGGCCGCGCGCAGCATGACCGAGCAGCGGTTCGCCGAACTGGCAGGGATTTTTGGCCAGGCCTCCAGCCTGGAGGCGGATTTCTGGCAAAT‑GGGGTTGGACGGGACCGTGTAAA‑CC‑GCCGTGGGCTGGGTGa < 2:2367201/136‑1 (MQ=255)caaCTGCCCGCGCGCAGCATGACCGAGCAGCGGTTCGCCGAACTGGCAGGGATTTTTGGCCAGGCCTCCAGCCTGGAGGCGGATTTCTGGCAAAT‑GGGGTTGGACGGGACCGTGTAAA‑CC‑GCCGTGGGCTGGGTGa < 2:223412/135‑1 (MQ=255) ttttttttgGGCCTGGCCTCCTGCTGGGTGGCGTATTTGTGTAAATT‑GGGGTGGGCGGGGACGGTTTAAC‑CC‑GCCGTGGGGGGGGTTATTACTCCCCAGCCCAGGACCGCTTTGGTGCATGGGCGCCTCAAAATaa < 2:1426019/132‑1 (MQ=255) gggggtaTTTCT‑GCAAATGGGGGTGGGCCGGCACCGTTAAAC‑CC‑GCGGGGGGCGGGGTTATAACTACCCCCCCCAGGACCGCTTTGGTGCATGGGCGCCTCAAAATAAGTCGTCCCGCACACTCCAGATCGTCAGa < 1:672206/130‑1 (MQ=255) tttttCTGGAAATT‑GGGGTTGGCCGGGCCCGTTTAAC‑CC‑GCCGTGGGCTGGGTTATTACTCCCCCGCCCAGGACCGCTTTGGTGCATGGGCGCCTCAAAATAAGTCGTCCCGCACACTCCAGATCGTCAGATCGCa < 1:2718775/134‑1 (MQ=255) tttttCT‑GCAAATGGGGGTGGGCCGGCCCCGTTAAAC‑CC‑GCCGGGGGCGGGGTCATAACAACCCACCCCAGGACCGCTTTGGTGCATGGGCGCCTCAAAATAAGTCGTCCCGCACACTCCAGATCGTCAGATCGCa < 2:2637963/134‑1 (MQ=255) taTTTCTGGCAATG‑GGGGTGGCCCGGGACCGTGAAAC‑CC‑GCCGGGGGCTGGGTTATTACTCCCCCCCCCAGGACCGCTTTGGTGCATGGGCGCCTCAAAATAAGTCGTCCCGCACACTCCAGATCGTCAGATCGCa < 1:812473/135‑1 (MQ=255) taTTTCTGGCAAAT‑GGGGTTGGAGGGGACCGTGTAAA‑CC‑GCCGTGGGCTGGGTTATTACTACCCAGCCCAGGACCGCTTTGGTGCATGGGCGCCTCAAAATAAGTCGTCCCGCACACTCCAGATCGTCAGATCGCa < 2:2419424/135‑1 (MQ=255) taTTTCTGGCAAAT‑GGGGTTGGACGGCCCGGTGTAAC‑CC‑GCCGGGGGCGGGGTGATAACTCCCCAGCCCAGGACCGCTTTGGTGCATGGGCGCCTCAAAATAAGTCGTCCCGCACACTCCAGATCGTCAGATCGCa < 2:819725/135‑1 (MQ=255) taTTTCT‑GCAAATGGGGGTTGGCCGGGACCGTTAAAC‑CC‑GCCGGGGGGTGGGTTATTACTACCCCGCCCAGGACCGCTTTGGTGCATGGGCGCCTCAAAATAAGTCGTCCCGCACACTCCAGATCGTCAGATCGCa < 1:333484/135‑1 (MQ=255) taTTGCTGGCAAAG‑GGGGTGGGCCGGGACCGTGAAAC‑CC‑GCCGTGGGCTGGGTGATTACTACCCAGCCCAGGACCGCTTTGGTGCATGGGCGCCTCAAAATAAGTCGTCCCGCACACTCCAGATCGTCAGATCGCa < 2:2363975/135‑1 (MQ=255) tttttcggCAAAT‑TGGGGGGGGCGGGCCCGGTTAAA‑CCGGCGGGGGGGGGGGGGATCACTCCCCACCCCAGGACCGCTTTGGTGCATGGGCGCCTCAAAATAAGTCGTCCCGCACACTCCAGATCGTCAGATCGCa < 1:1015140/130‑1 (MQ=255) gCAAAT‑GGGGTTGGACGGGACGGTGTAAA‑CC‑GCCGTGGGCTGGGCGATTACTACCCAGCCCAGGACCGCTTTGGTGCATGGGCGCCTCAAAATAAGTCGTCCCGCACACTCCAGATCGTCAGATCGCAGCTTTAAt < 2:1685302/136‑1 (MQ=255) aaaG‑GGGGGTGGCCGGCCCCGTGTAAC‑CC‑GCCGTGGGCTGGGTGATTACAACCCAGCCCAGGACCGCTTTGGTGCATGGGCGCCTCAAAATAAGTCGTCCCGCACACTCCAGATCGTCAGATCGCAGCTTTAAtgt < 1:2114789/136‑1 (MQ=255) attgggggTTGCACGGCACGGTTTAAC‑CC‑GCCGGGGGGGGGGTTATTACACCCCAGCCCAGGACCGCTTTGGTGCATGGGCGCCTCAAAATAAGTCGTCCCGCACACTCCAGATCGTCAGATCGCAGCTTTAAtgt < 1:246414/132‑1 (MQ=255) att‑GGGGGTGGCCCGGCCCGGTTAAACCC‑GCGGGGGGGTGGGTTATAACACCCCCCCCCAGGACCGCTTTGGTGCATGGGCGCCTCAAAATAAGTCGTCCCGCACACTCCAGATCGTCAGATCGCAGCTTTAAtgt < 1:920856/134‑1 (MQ=255) tt‑GGGGTTGCAGGGTACGGTTTAAA‑CC‑GCCTTGGGGTGGGTTATTACTACCCAGCCCAGGACCGCTTTGGTGCATGGGCGCCTCAAAATATGTCGTCGCTCACACTCCAGATCGTCAGATCGCAGCTTTAATGTGc < 2:66395/135‑1 (MQ=255) atgggggTGGCAGGGGACCGTGAAAA‑CC‑GCCGGGGGCGGGGTTATAACAACCCAGCCCAGGACCGCTTTGGTGCATGGGCGCCTCAAAATAAGTCGTCCCGCACACTCCAGATCGTCAGATCGCAGCTTTAAtgtg < 1:62243/133‑1 (MQ=255) tgggggGTGGCGGGGACCGTGAAAA‑CC‑GCGGTGGGCTGGGTTATTACAACCCAGCCCAGGACCGCTTTGGTGCATGGGCGCCTCAAAATAAGTCGTCCCGCACACTCCAGATCGTCAGATCGCAGCTTTAATGTGc < 1:684233/134‑1 (MQ=255) gggggTGGGAGGGGCCGGGTTAAC‑CC‑GCCGTGGGCGGGGTGATTACTCCCCAGCCCAGGACCGCGTTGGTGCATGGGCGCCTCAAAATAAGTCGTCCCGCACACTCCAGATCGTCAGATCGCAGCTTTAATGTGca < 2:1925435/135‑1 (MQ=255) gccgTGGGCTGGGTGATTACTACCCAGCCCAGGACCGCTTTGGTGCATGGGCGCCTCAAAATAAGTCGTCCCGCACACTCCAGATCGTCAGATCGCAGCTTTAATGTGCACAGTGCATATGGATTTCTGGGCGAAc < 2:1700656/136‑1 (MQ=255) gggCTGGGTTATTACTCCCCTGCCCAGGACCGCTTTGGTGCATGGGCGCCTCAAAATAAGTCGTCCCGCACACTCCAGATCGTCAGATCGCAGCTTTAATGTGCACAGTGCATATGGATTTCTGGGCGAACAGccc < 2:3189235/136‑1 (MQ=255) | GAACTGGCCGCGCGCAGCATGACCGAGCAGCGGTTCGCCGAACTGGCAGGGATTTTTGGCCAGGCCTCCAGCCTGGAGGCGGATTTCTGGCAAAT‑GGGGTTGGACGGGACCGTGTAAA‑CC‑GCCGTGGGCTGGGTGATTACTACCCAGCCCAGGACCGCTTTGGTGCATGGGCGCCTCAAAATAAGTCGTCCCGCACACTCCAGATCGTCAGATCGCAGCTTTAATGTGCACAGTGCATATGGATTTCTGGGCGAACAGCCC > NC_002947/3617286‑3617546 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |