| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 414130 = | 138 (0.700) | 7 (0.040) | 7/260 | NT | 5.0% | intergenic (+147/‑56) | glnE/waaF | glutamate‑ammonia‑ligase adenylyltransferase/ADP‑heptose:LPS heptosyltransferase II |
| ? | NC_002947 | 414167 = | 134 (0.720) | intergenic (+184/‑19) | glnE/waaF | glutamate‑ammonia‑ligase adenylyltransferase/ADP‑heptose:LPS heptosyltransferase II | |||||
CGATCACGCAGTCGGGGTGCTGCTGTTTCAGGCACTGGAACAGGGTCTGCGCCATCACCATGTCGCCGACCCAGCTGGGGCCAATGATCAGTATTCTCATGCTTAGTCCAGAAACGCTCGGGGAGGCTACAGGCTGCGGTACAGCCTGGCCTCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/414285‑414130‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctccccGAGCGTTTCTGGACTAAGCATGAGAATACTGATCATTGGCCCCAGCTGGGTCGGCGACATGGTGATGGCGCAGACCCTGTTCCAGTGCCTGAAACAGCAGCACCCCGACTGCGTGATCGACGTGCTGGCCCCTGAATGGAGCCGGCCGA > NC_002947/414167‑414315 CGATCACGCAGTCGGGGTGCTGCTGTTTCAGGCACTGGAACAGGGTCTGCGCCATCACCATGTCGCCGACCCAGCTGGGGCCAATGATCAGTATTCTCATGCTTAGTCCAGACACGCTCGGGGAGGCTACAGGCTGCGGTACAGCCTGGC < 2:1945442/150‑1CGATCACGCAGTCGGGGTGCTGCTGTTTCAGGCACTGGAACAGGGTCTGCGCCATCACCATGTCGCCGACCCAGCTGGGGCCAATGATCAGTATTCTCATGCTTAGTCCAGAAACGCTCGGGGAGGCTACAGGCTGCGGTACAGCCTGGC > 2:3124502/1‑150 ATCACGCAGTCGGGGTGCTGCTGTTTCAGGCACTGGAACAGGGTCTGCGCCATCACCATGTCGCCGACCCAGCTGGGGCCAATGATCAGTATTCTCATGCTTAGTCCAGAAACGCTCGGGGAGGCTACAGGCTGCGGTACAGCCTGGCCT > 1:2983878/1‑150 TCACGCAGTCGGGGTGCTGCTGTTTCAGGCACTGGAACAGGGTCTGCGCCATCACCATGTCGCCGACCCAGCTGGGGCCAATGATCAGTATTCTCATGCTTAGTCCAGAAACGCTCGGGGAGGCTACAGGCTGCGGTACAGCCTGGCCTC < 1:3293291/150‑1 TCACGCAGTCGGGGTGCTGCTGTTTCAGGCACTGGAACAGGGTCTGCGCCATCACCATGTCGCCGACCCAGCTGGGGCCAATGATCAGTATTCTCATGCTTAGTCCAGAAACGCTCGGGGAGGCTACAGGCTGCGGTACAGCCTGGCCTC > 1:3394113/1‑150 ACGCAGTCGGGGTGCTGCTGTTTCAGGCACTGGAACAGGGTCTGCGCCATCACCATGTCGCCGACCCAGCTGGGGCCAATGATCAGTATTCTCATGCTTAGTCCAGAAACGCTCGGGGAGGCTACAGGCTGCGGTACAGCCTGGCCTCCC < 2:3037013/150‑1 ACGCAGTCGGGGTGCTGCTGTTTCAGGCACTGGAACAGGGTCTGCGCCATCACCATGTCGCCGACCCAGCTGGGGCCAATGATCAGTATTCTCATGCTTAGTCCAGAAACGCTCGGGGAGGCTACAGGCTGCGGTACAGCCTGGCCTCCC > 1:708389/1‑150 ACGCAGTCGGGGTGCTGCTGTTTCAGGCACTGGAACAGGGTCTGCGCCATCACCATGTCGCCGACCCAGCTGGGGCCAATGATCAGTATTCTCATGCTTAGTCCAGAAACGCGCGGGGAGGCTACAGGCTGCGGTACAGCCTGGCCTCCC > 1:1973926/1‑150 TGGAACAGGGTCTGCGCCATCACCATGTCGCCGACCCAGCTGGGGCCAATGATCAGTATTCTCATGCTTAGTCCAGAAACGCTCGGGGAGGCTACAGGCTGCGGTACAGCCTGGCCTCCCCGAGCGTTTCTGGACTAAGCATGAGAATAC < 2:433727/150‑1 CAGAAACGCTCGGGGAGGCTACAGGCTGCGGTACAGCCTGGCCTCCCCAAGCGTTTCTGGACTAAGCATGAGAATACTGATCATTGGCCCCAGCTGGGTCGGCGACATGGTGATGGCG > 1:4223954/1‑118 CAGAAACGCTCGGGGAGGCTACAGGCTGCGGTACAGCCTGGCCTCCCCAAGCGTTTCTGGACTAAGCATGAGAATACTGATCATTGGCCCCAGCTGGGTCGGCGACATGGTGATGGCG < 2:4223954/118‑1 TCGGGGAGGCTACAGGCTGCGGTACAGCCTGGCCTCCCCGAGCGTTTCTGGACTAAGCATGAGAATACTGATCATTGGCCCCAGCTGGGTCGGCGACATGGTGATGGCGCAGACCCTGTTCCAGTGCCTGAAACAGCAGCACCCCGACTG > 1:3799152/1‑150 GGAGGCTACAGGCTGCGGTACAGCCTGGCCTCCCCGAGCGTTTCTGGACTAAGCATGAGAATACTGATCATTGGCCCCAGCTGGGTCGGCGACATGGTGATGGCGCAGACCCTGTTCCAGTGCCTGAAACAGCAGCACCCCGACTGCGTG > 1:2622471/1‑150 AGGCTACAGGCTGCGGTACAGCCTGGCCTCCCCTAGCGTTTCTGGACTAAGCATGAGAATACTGATCATTGGCCCCAGCTGGGTCGGCGACATGGTGATGGCGCAGACCCTGTTCCAGTGCCTGAAACAGCAGCACCCCGACTGCGTGAT > 2:2183995/1‑150 GCTACAGGCTGCGGTACAGCCTGGCCTCCCCGAGCGTTTCTGGACTAAGCATGAGAATACTGATCATTGGCCCCAGCTGGGTCGGCGACATGGTGATGGCGCAGACCCTGTTCCAGTGCCTGAAACAGCAGCACCCCGACTGCGTGATCG > 2:2049111/1‑150 GCCTCCCCGAGCGTTTCTGGACTAAGCATGAGAATACTGATCATTGGCCCCAGCTGGGTCGGCGACATGGTGATGGCGCAGACCCTGTTC < 1:584368/90‑1 GCCTCCCCGAGCGTTTCTGGACTAAGCATGAGAATACTGATCATTGGCCCCAGCTGGGTCGGCGACATGGTGATGGCGCAGACCCTGTTC > 2:584368/1‑90 GCCGCCCCGAGCGTTTCTGGACTAAGCATGAGAATACTGATCATTGGCCCCAGCTGGGTCGGCGACATGGTGATGGCGCAGACCCTGTTCCAGTGCCTGAAACAGCAGCACCCCGACTGCGTGATCGACGTGCTGGCCCCTGAATGGAGC > 1:1676341/1‑150 CCTCCCCGAGCGTTTCTGGACTAAGCATGAGAATACTGATCATTGGCCCCAGCTGGGTCGGCGACATGGTGATGGCGCAGACCCTGTTCCAGTGCCTGAAACAGCAGCACCCCGACTGCGTGATCGACGTGCTGGCCCCTGAATGGAGCC < 2:2462799/150‑1 CTCCCCGAGCGTTTCTGGACTAAGCATGAGAATACTGATCATTGGCCCCAGCTGGGTCGGCGACATGGTGATGGCGCAGACCCTGTTCCAGTGCCTGAAACAGCAGCACCCCGACTGCGTGATCGACGTGCTGGCCCCTGAATGGAGCCG > 2:1474507/1‑150 TCCCCGAGCGTTTCTGGACTAAGCATGAGAATACTGATCATTGGCCCCAGCTGGGTCGGCGACATGGTGATGGCGCAGACCCTGTTCCAGTGCCTGAAACAGCAGCACCCCGACTGCGTGATCGACGTGCTGGCCCCTGAATGGAGCCGG > 2:3016496/1‑150 TCCCCGAGCGTTTCTGGACTAAGCATGAGAATACTGATCATTGGCCCCAGCTGGGTCGGCGACATGGTGATGGCGCAGACCCTGTTCCAGTGCCTGAAACAGCAGCACCCCGACTGCGTGATCGACGTGCTGGCCCCTGAATGGAGCCGG > 2:512201/1‑150 TCCCCGAGCGTTTCTGGACTAAGCATGAGAATACTGATCATTGGCCCCAGCTGGGTCGGCGACATGGTGATGGCGCAGACCCTGTTCCAGTGCCTGAAACAGCAGCACCCCGACTGCGTGATCGACGTGCTGGCCCCTGAATGGAGCCGG > 1:1193491/1‑150 CCCCGAGCGTTTCTGGACTAAGCATGAGAATACTGATCATTGGCCCCAGCTGGGTCGGCGACATGGTGATGGCGCAGACCCTGTTCCAGTGCCTGAAACAGCAGCACCCCGACTGCGTGATCGACGTGCTGGCCCCTGAATGGAGCCGGC < 2:1201750/150‑1 CCCCGAGCGTTTCTGGACTAAGCATGAGAATACTGATCATTGGCCCCAGCTGGGTCGGCGACATGGTGATGGCGCAGACCCTGTTCCAGTGCCTGAAACAGCAGCACCCCGACTGCGTGATCGACGTGCTGGCCCCTGAATGGAGCCGGC < 2:1201636/150‑1 CCCGAGCGTTTCTGGACTAAGCATGAGAATACTGATCATTGGCCCCAGCTGGGTCGGCGACATGGTGATGGCGCAGACCCTGTTCCAGTGCCTGAAACAGCAGCACCCCGACTGCGTGATCGACGTGCTGGCCCCTGAATGGAGCCGGCC > 2:554933/1‑150 CGAGCGTTTCTGGACTAAGCATGAGAATACTGATCATTGGCCCCAGCTGGGTCGGCGACATGGTGATGGCGCAGACCCTGTTCCAGTGCCTGAAACAGCAGCACCCCGACTGCGTGATCGACGTGCTGGCCCCTGAATGGAGCCGGCCGA > 2:4206953/1‑150 CGATCACGCAGTCGGGGTGCTGCTGTTTCAGGCACTGGAACAGGGTCTGCGCCATCACCATGTCGCCGACCCAGCTGGGGCCAATGATCAGTATTCTCATGCTTAGTCCAGAAACGCTCGGGGAGGCTACAGGCTGCGGTACAGCCTGGCCTCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/414285‑414130‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctccccGAGCGTTTCTGGACTAAGCATGAGAATACTGATCATTGGCCCCAGCTGGGTCGGCGACATGGTGATGGCGCAGACCCTGTTCCAGTGCCTGAAACAGCAGCACCCCGACTGCGTGATCGACGTGCTGGCCCCTGAATGGAGCCGGCCGA > NC_002947/414167‑414315 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |