New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1409101	72 (0.370)	14 (0.080)	7/240	NT	15.2%	intergenic (+39/‑236)	PP_1230/nadA	hypothetical protein/quinolinate synthase iron‑sulfur cluster subunit
	?	NC_002947	= 1409127	94 (0.550)					intergenic (+65/‑210)	PP_1230/nadA	hypothetical protein/quinolinate synthase iron‑sulfur cluster subunit

GATGATGTGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCTGTTGC‑GGCCTCTTCGCGGGTGAACCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1408937‑1409101 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttcgcgggtgaacccgcCCCTACACTGTGAAATCCTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGCAACAGGAGAAACCATCACCCCTGCGGCGACAGGGCCCCCAGATGCGCCGCCATGAACATGGCAAATTCTTCAACGGTCATTTTTCGGCCATTGAAATC  <  NC_002947/1409127‑1408979                                                                                                                                                                                                                                                                                                                             GATGATGTGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCTGTTGC‑GGCCTCTT                                                                                                                                                                      <  1:1082433/150‑1 GATGATGTGGTCAGCAGCCTGCACTATGCCGATGGCAAGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCTGTTGC‑GGCCTCTT                                                                                                                                                                      >  2:113621/1‑150  ATGATGTTGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCTGTTGC‑GGCCTCTTC                                                                                                                                                                     <  1:3955076/150‑1  ATGATGTGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCTGTTGC‑GGCCTCTTC                                                                                                                                                                     <  2:3349362/150‑1  ATGATGTGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCTGTTGC‑GGCCTCTTC                                                                                                                                                                     <  2:3105332/150‑1    GATGTGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCTGTTGC‑GGCCTCTTCGC                                                                                                                                                                   <  2:1642115/150‑1      TGTGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCTGTTGC‑GGCCTCTTCGCGG                                                                                                                                                                 >  1:3699664/1‑150      TGTGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCTGTTGC‑GGCCTCTTCGCGG                                                                                                                                                                 <  1:4331744/150‑1      TGTGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCTGTTGC‑GGCCTCTTCGCGG                                                                                                                                                                 <  1:1783553/150‑1        TGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCTGTTGC‑GGCCTCTTCGCGGGT                                                                                                                                                               >  1:2882554/1‑150        TGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCTGTTGC‑GGCCTCTTCGCGGGT                                                                                                                                                               <  2:1894795/150‑1        TGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCTGTTGC‑GGCCTCTTCGCGGGT                                                                                                                                                               <  2:1894783/150‑1        TGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCTGTTGC‑GGCCTCTTCGCGGGT                                                                                                                                                               <  1:2322261/150‑1        TGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCTGTTGC‑GGCCTCTTCGCGGGT                                                                                                                                                               <  2:1334136/150‑1              GCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCTGTTGC‑GGCCTCTTCGCGGGTGAACCC                                                                                                                                                         <  1:3192846/150‑1              GCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCTGTTGC‑GGCCTCTTCGCGGGTGAACCC                                                                                                                                                         <  2:2094041/150‑1                AGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCTGTTGC‑GGCCTCTTCGCGGGTGAACCCGC                                                                                                                                                       <  2:4142981/150‑1                                       GGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCTGTTGC‑GGCCTCTTCGCGGGTGAACCCGCTCCTACACTGTGAAATCCTCGTA                                                                                                                                <  2:1800434/150‑1                                            ATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCTGTTGC‑GGCCTCTTCGCGGGTGAACCCGCCCCTACACTGTGAAATCCTCGTAGGAGC                                                                                                                           <  1:3120648/150‑1                                              TTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCTGTTGC‑GGCCTCTTCGCGGGTGAACCCGCCCCTACACTGTGAAATCCTCGTAGGAGCGG                                                                                                                         <  2:3835889/150‑1                                              TTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCTGTTGC‑GGCCTCTTCGCGGGTGAACCCGCCCCTACACTGTGAAATCCTCGTAGGAGCGG                                                                                                                         <  1:3369375/150‑1                                              TTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCTGTTGC‑GGCCCCTTCGCGGGTGAACCCGCCCCTACACTGTGAAATCCTCGTAGGAGCGG                                                                                                                         <  2:3461298/150‑1                                              TTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCTGTTGC‑GGCCCCTTCGCGGGTGAACCCGCCCCTACACTGTGAAATCCTCGTAGGAGCGG                                                                                                                         <  2:2382937/150‑1                                              TTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCTGTTGC‑GGCCCCTTCGCGGGTGAACCCGCCCCTACACTGTGAAATCCTCGTAGGAGCGG                                                                                                                         <  2:2383131/150‑1                                              TTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCTGTTGC‑GGCCCCTTCGCGGGTGAACCCGCCCCTACACTGTGAAATCCTCGTAGGAGCGG                                                                                                                         <  2:894702/150‑1                                               TCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCTGTTGCGGGCCCCTTCGCGGGTGAACCCGCCCCTACACTGTGAAATCCTCGTAGGAGCGG                                                                                                                         <  1:1246104/150‑1                                               TCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCTGTTGC‑GGCCTCTTCGCGGGTGAACCCGCCCCTACACTGTGAAATCCTCGTAGGAGCGGG                                                                                                                        <  1:2522898/150‑1                                                             ATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCTGTTGC‑GGCCTCTTCGCGGGTGAACCCGCCCCTACACTGTGAAATCCTCGTAGGAGCGGGTTCACCCGCGAAGA                                                                                                          <  2:716646/150‑1                                                              tgcCCGTTGAATAATTTGCCATGTTCAGGGCGGCGCATCTGGGGGCCCTGTCGCCGCCGGGGTGATGGTTTCTCCTGTGGC‑GGCCTCTGCGCGGGTGAACCCGCCCCTACCCTGTGAAATCCTCGTAGGAGCGGGTTCACCCGCGAAGAG                                                                                                         <  2:1555279/147‑1                                                                                 CATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCTGTTGC‑GGCCTCTTCGCGGGTGAACCCGCCCCTACACTGTGAAATCCTCGTAGGAGCGG                                                                                                                         >  1:2118166/1‑115                                                                                 CATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCTGTTGC‑GGCCTCTTCGCGGGTGAACCCGCCCCTACACTGTGAAATCCTCGTAGGAGCGG                                                                                                                         <  2:2118166/115‑1                                                                                                                                                         GCGGGTGAACCCGCCCCTACACTGTGAAATCCTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGCAACAGGAGAAACCATCACCCCTGCGGCGACAGGGCCCCCAGATGCGCCGCCATGAACATGGCAAATTCTTCAACGGTCATTTTTC               >  2:2413780/1‑150                                                                                                                                                         GCGGGTGAACCCGCCCCTACACTGTGAAATCCTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGCAACAGGAGAAACCATCACCCCTGCGGCGACAGGGCCCCCAGATGCGCCGCCATGAACATGGCAAATTCTTCAACGGTCATTTTTC               >  2:1156863/1‑150                                                                                                                                                         GCGGGTGAACCCGCCCCTACACTGTGAAATCCTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGCAACAGGAGAAACCATCACCCCTGCGGCGACAGGGCCCCCAGATGCGCCGCCATGAACATGGCAAATTCTTCAACGGTCATTTTTC               <  2:1080451/150‑1                                                                                                                                                           GGGTGAACCCGCCCCTACACTGTGAAATCCTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGCAACAGGAGAAACCATCACCCCTGCGGCGACAGGGCCCCCAGATGCGCCGCCATGAACATGGCAAATTCTTCAACGGTCATTTTTCGG             >  2:4078043/1‑150                                                                                                                                                             GTGAACCCGCCCCTACACTGTGAAATCCTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGCAACAGGAGAAACCATCACCCCTGCGGCGACAGGGCCCCCAGATGCGCCGCCATGAACATGGCAAATTCTTCAACGGTCATTTTTCGGCC           >  2:988735/1‑150                                                                                                                                                              tcAACCCGCCCCTACAATTTCAAATCCTGTTAGGAGCGGTTTCACCCGCGAAGAGGCCGCAACAGGAGAAACCATCACCCCTGCGGCGACAGGGCCCCCAGATGCGCCGCCATGAACATGGCAAATTCTTCAACGGTCATTTTTCGGCCA          <  1:4193739/148‑1                                                                                                                                                                AACCCGCCCCTACACTGTGAAATCCTCGTCGGAGCGGGTTCACCCGCGAAGAGGCCGCAACAGGAGAAACCATCACCCCTGCGGCGACAGGGCCCCCAGATGCGCCGCCATGAACATGGCAAATTCTTCAACGGTCATTTTTCGGCCATT        <  1:1425884/150‑1                                                                                                                                                                  CCCGCCCCTACACTGTGAAATCCTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGCAACAGGAGAAACCATCACCCCTGCGGCGACAGGGCCCCCAGATGCGCCGCCATGAACATGGCAAATTCTTCAACGGTCATTTTTCGGCCATTGA      >  1:1268757/1‑150                                                                                                                                                                   CCGCCCCTACACTGTGAAATCCTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGCAACAGGAGAAACCATCACCCCTGCGGCGACAGGGCCCCCAGATGCGCCGCCATGAACATGGCAAATTCTTCAACGGTCATTTTTCGGCCATTGAA     >  2:1141261/1‑150                                                                                                                                                                   CCGCCCCTACACTGTGAAATCCTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGCAACAGGAGAAACCATCACCCCTGCGGCGACAGGGCCCCCAGATGCGCCGCCATGAACATGGCAAATTCTTCAACGGTCATTTTTCGGCCATTGAA     >  1:882794/1‑150                                                                                                                                                                   CCGCCCCTACACTGTGAAATCCTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGCAACAGGAGAAACCATCACCCCTGCGGCGACAGGGCCCCCAGATGCGCCGCCATGAACATGGCAAATTCTTCAACGGTCATTTTTCGGCCATTGAA     >  1:3644192/1‑150                                                                                                                                                                   CCGCCCCTACACTGTGAAATCCTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGCAACAGGAGAAACCATCACCCCTGCGGCGACAGGGCCCCCAGATGCGCCGCCATGAACATGGCAAATTCTTCAACGGTCATTTTTCGGCCATTGAA     >  1:3190232/1‑150                                                                                                                                                                    CGCCCCTACACTGTGAAATCCTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGCAACAGGAGAAACCATCACCCCTGCGGCGACAGGGCCCCCAGATGCGCCGCCATGAACATGGCAAATTCTTCAACGGTCATTTTTCGGCCATTGAAA    <  2:3890770/150‑1                                                                                                                                                                     GCCCCTACACTGTGAAATCCTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGCAACAGGAGAAACCATCACCCCTGCGGCGACAGGGCCCCCAGATGCGCCGCCATGAACATGGCAAATTCTTCAACGGTCATTTTTCGGCCATTGAAAT   >  2:1017779/1‑150                                                                                                                                                                      CCCCTACACTGTGAAATCCTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGCAACAGGAGAAACCATCACCCCTGCGGCGACAGGGCCCCCAGATGCGCCGCCATGAACATGGCAAATTCTTCAACGGTCATTTTTCGGCCATTGAAATC  >  2:3201267/1‑150                                                                                                                                                                      CCCCTACACTGTGAAATCCTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGCAACAGGAGAAACCATCACCCCTGCGGCGACAGGGCCCCCAGATGCGCCGCCATGAACATGGCAAATTCTTCAACGGTCATTTTTCGGCCATTGAAATC  <  1:3352478/150‑1                                                                                                                                                                      CCCCTACACTGTGAAACCCTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGCAACAGGAGAAACCATCACCCCTGCGGCGACAGGGCCCCCAGATGCGCCGCCATGAACATGGCAAATTCTTCAACGGTCATTTTTCGGCCATTGAAATC  <  1:3352397/150‑1                                                                                                                                                                                                                                                                                                                             GATGATGTGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCTGTTGC‑GGCCTCTTCGCGGGTGAACCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1408937‑1409101 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttcgcgggtgaacccgcCCCTACACTGTGAAATCCTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGCAACAGGAGAAACCATCACCCCTGCGGCGACAGGGCCCCCAGATGCGCCGCCATGAACATGGCAAATTCTTCAACGGTCATTTTTCGGCCATTGAAATC  <  NC_002947/1409127‑1408979

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.