| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2073127 = | 119 (0.600) | 6 (0.040) | 4/240 | NT | 5.7% | intergenic (+114/+113) | PP_1846/PP_1847 | group II intron‑encoding maturase/TonB‑dependent ferric siderophore receptor |
| ? | NC_002947 | 2073200 = | 95 (0.550) | intergenic (+187/+40) | PP_1846/PP_1847 | group II intron‑encoding maturase/TonB‑dependent ferric siderophore receptor | |||||
CTGTTCCAGGGGGCACCGCGTACCGCTCGGCTTTCGGCTTCGATCAGCTTCTAGATTGCCGGGGCCGCTCTGCGGCCCTTTCGCGACCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGCCCGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2073293‑2073127‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggcaagcccgctCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGCCCCCTGGAACAGGTAGTTATCCCCCAGGTAATCCCCCACATCGCGCCAGTAACGCTTGTCCAGCACG > NC_002947/2073200‑2073348 CTGTTCCAGGGGGCACCGCGTACCGCTCGGCTTTCGGCTTCGATCAGCTTCTAGATTGCCGGGGCCGCTCTGCGGCCCTTTCGCGACCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCT > 2:1478446/1‑150CTGTTCCAGGGGGCACCGCGTACCGCTCGGCTTTCGGCTTCGATCAGCTTCTAGATTGCCGGGGCCGCTCTGCGGCCCTTTCGCGACCTGTGGGAGCGGGCTTGCCCGCGAAAACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCT > 2:2439925/1‑150 TGTTCCAGGGGGCACCGCGTACCGCTCGGCTTTCGGCTTCGATCAGCTTCTAGATTGCCGGGGCCGCTCTGCGGCCCTTTCGCGACCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTT < 2:1901577/150‑1 TGTTCCAGGGGGCACCGCGTACCGCTCGGCTTTCGGCTTCGATCAGCTTCTAGATTGCCGGGGCCGCTCTGCGGCCCTTTCGCGACCGGTGGGAGCGGGCGTGCCCGCGAACAACGGCGGCGCCCCTGCCATCCACCCCCGGGGTGGCTT > 1:3113383/1‑150 gTCCCGGGGGCACCGCGTACCGCTCGGCTTGCGGCTTCGATCCGCGTCTAGATGGCCGGGGCCGCTCTGCGGCCCTTTCGCGACCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCG < 1:3850135/149‑1 TTCCAGGGGGCACCGCGTACCGCTCGGCTTTCGGCTTCGATCAGCTTCTAGATTGCCGGGGCCGCTCTGCGGCCCTTTCGCGACCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCG > 2:2931748/1‑150 TTCCAGGGGGCACCGCGTACCGCTCGGCTTTCGGCTTCGATCAGCTTCTAGATTGCCGGGGCCGCTCTGCGGCCCTTTCGCGACCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCCCTGCCAAACACCACCGGGTTTGCGTCG > 1:3599108/1‑150 TCCAGGGGGCACCGCGTACCGCTCGGCTTTCGGCTTCGATCAGCTTCTAGATTGCCGGGGCCGCTCTGCGGCCCTTTCGCGACCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGC < 2:2065061/150‑1 TCCAGGGGGCACCGCGTACCGCTCGGCTTTCGGCTTCGATCAGCTTCTAGATTGCCGGGGCCGCTCTGCGGCCCTTTCGCGACCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGC < 1:4400427/150‑1 CAGGGGGCACCGCGTACCGCTCGGCTTTCGGCTTCGATCAGCTTCTAGATTGCCGGGGCCGCTCTGCGGCCCTTTCGCGACCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGG < 1:208049/150‑1 CAGGGGGCACCGCGTACCGCTCGGCTTTCGGCTTCGATCAGCTTCTAGATTGCCGGGGCCGCTCTGCGGCCCTTTCGCGACCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGG < 1:2120508/150‑1 CAGGGGGCACCGCGTACCGCTCGGCTTTCGGCTTCGATCAGCTTCTAGATTGCCGGGGCCGCTCTGCGGCCCTTTCGCGACCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGG < 2:657908/150‑1 CAGGGGGCACCGCGTACCGCTCGGCTTTCGGCTTCGATCAGCTTCTAGATTGCCGGGGCCGCTCTGCGGCCCTTTCGCGACCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGG < 1:3056502/150‑1 CAGGGGGCACCGCGTACCGCTCGGCTTTCGGCTTCGATCAGCTTCTAGATTGCCGGGGCCGCTCTGCGGCCCTTTCGCGACCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGG < 1:786802/150‑1 AGGGGGCACCGCGTACCGCTCGGCTTTCGGCTTCGATCAGCTTCTAGATTGCCGGGGCCGCTCTGCGGCCCTTTCGCGACCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGG > 2:943446/1‑150 AGGGGGCACCGCGTACCGCTCGGCTTTCGGCTTCGATCAGCTTCTAGATTGCCGGGGCCGCTCTGCGGCCCTTTCGCGACCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGG > 2:724723/1‑150 GGGGCACCGCGTACCGCTCGGCTTTCGGCTTCGATCAGCTTCTAGATTGCCGGGGCCGCTCTGCGGCCCTTTCGCGACCTGTGGGAGCGGGCGTTGCCGCGAACACCGGCGAAGCCCCGGCCAAACAACACCGGGTTTGGGTCGCGGGCc > 1:3444973/1‑149 CCGCGTACCGCTCGGCTTTCGGCTTCGATCAGCTTCTAGATTGCCGGGGCCGCTCTGCGGCCCTTTCGCGACCGGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGGGTTGGCTTCGCGGGCAAGCCCc > 2:4250945/1‑149 CCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGCCCCCTG > 2:2783898/1‑150 CCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGCCCCCTG > 1:2658861/1‑150 CCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGCCCCCTG > 1:2320978/1‑150 CGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTG > 2:2865170/1‑142 CGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTG < 1:2865170/142‑1 CACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGCCCCCTGGAACAGG > 1:3324924/1‑150 TTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGCCCCCTGGAACAGGTAGTTATCCCCCAGGTAATCCCCCACATCGCGCCAGT > 1:3786332/1‑150 TTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGCCCCCTGGAACAGGTAGTTATCCCCCAGGTAATCCCCCACATCGCGCCAGT > 2:1784062/1‑150 TTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGCCCCCTGGAACAGGTAGTTATCCCCCAGGTAATCCCCCACATCGCGCCAGT > 2:1783907/1‑150 CGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGCCCCCTGGAACAGGTAGTTATCCCCCAGGTAATCCCCCACATCGCGCCAGTAA < 2:2097245/150‑1 CGCGGCCAAGCCCGCTCCCACAGGTCGCGAACGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGCCCCCTGGAACAGGTAGTTATCCCCCAGGTAATCCCCCACATCGCGCCAGTAA < 1:2047542/150‑1 CGGGCAAGCCCGCTCCCACCGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGCCCCCTGGAACAGGTAGTTATCCCCCAGGTAATCCCCCACATCGCGCCAGTAACG < 2:4159169/150‑1 gggaaccCCCGCTCCCACCGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGCCCCCTGGAACAGGTAGTTATCCCCCAGGTAATCCCCCACAACGCGCCAGTAACGC < 1:816177/143‑1 GGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGCCCCCTGGAACAGGTAGTTATCCCCCAGGTAATCCCCCACATCGCGCCAGTAACGC < 2:4347852/150‑1 GCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGCCCCCTGGAACAGGTCGTTATCCCCCAGGTAATCCCCCACATCGCGCCAGTAACGCTT > 2:3344323/1‑150 GCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGCCCCCTGGAACAGGTAGTTATCCCCCAGGTAATCCCCCACATCGCGCCAGTAACGCTT > 2:3344238/1‑150 CAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGCCCCCTGGAACAGGTAGTTATCCCCCAGGTAATCCCCCACATCGCGCCAGTAACGCTTG < 2:805494/150‑1 AAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGCCCCCTGGAACAGGTAGTTATCCCCCAGGT > 1:1805166/1‑120 AAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGCCCCCTGGAACAGGTAGTTATCCCCCAGGT < 2:1805166/120‑1 AGCCCGCACCCACAGGTCGCGATAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGCCCCCTGGAACAGGTAGTTATCCCCCAGGTAATCCCCCACATCGCGCCAGTAACGCTTGTC < 1:3610198/150‑1 CCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGTGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGCCCCCTGGAACAGGTAGTTATCCCCCAGGTAATCCCCCACATCGCGCCAGTAACGCTTGTCCA > 1:3607002/1‑150 CCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGCCCCCTGGAACAGGTAGTTATCCCCCAGGTAATCCCCCACATCGCGCCAGTAACGCTTGTCCAG < 1:3661321/150‑1 GCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGCCCCCTGGAACAGGTAGTTATCCCCCAGGTAATCCCCCACATCGCGCCAGTAACGCTTGTCCAGCA > 1:2351706/1‑150 TCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGCCCCCTGGAACAGGTAGTTATCCCCCAGGTAATCCCCCACATCGCGCCAGTAACGCTTGTCCAGCACG < 2:3154773/150‑1 TCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGCCCCCTGGAACAGGTAGTTATCCCCCAGGTAATCCCCCACATCGCGCCAGTAACGCTTGTCCAGCACG > 2:2203726/1‑150 CTGTTCCAGGGGGCACCGCGTACCGCTCGGCTTTCGGCTTCGATCAGCTTCTAGATTGCCGGGGCCGCTCTGCGGCCCTTTCGCGACCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGCCCGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2073293‑2073127‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggcaagcccgctCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGCCCCCTGGAACAGGTAGTTATCCCCCAGGTAATCCCCCACATCGCGCCAGTAACGCTTGTCCAGCACG > NC_002947/2073200‑2073348 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |