| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2796889 = | 152 (0.770) | 17 (0.090) | 9/272 | NT | 10.2% | intergenic (+32/+80) | PP_2447/puuB | hypothetical protein/gamma‑glutamylputrescine oxidase |
| ? | NC_002947 | 2796938 = | 150 (0.770) | intergenic (+81/+31) | PP_2447/puuB | hypothetical protein/gamma‑glutamylputrescine oxidase | |||||
GCAGGCCTGGCCTCTTCGCCGGCAAACCTGCGCCCACACGGACTGTGCAATAAGCACAAATCCTGTGGGCGCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2796963‑2796889‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggTTTGCCGGCGAAGA‑‑‑‑GGC‑CAGGCCTGCCTGAATCAGAAGCCCAGGCGATCGCGCAGGCTGTAGTACCAGGCACCGATGGCGCTGAAGGGTACGCGCAGCATCTGGCCACCCGGGAACGGGTAGTGCGGCAGGCCGGCAAAGGCGTCGAAA > NC_002947/2796938‑2797086 GCAGGCCTGGCCTCTTCGCCGGCAAACCTGCGCCCACACGGACTGTGCAATAAGCACAAATCCTGTGGGCGCGGGCTTGCCGGCGAAGAAGCCGGCACAGGCCTGCCTGAATCAGAAGCCCAGGCGATCGCGCAGGCTGTAGTACCAGGC > 1:339996/1‑150 GGCAAACCTGCGCCCACACGGACTGTGCAATAAGCACAAATCCTGTGGGCGCGGGCTTGCCGGCGAAGA‑‑‑‑GGC‑CAGGCCTGCCTGAATCAGAAGCCCAGGCGATCGCGCAGGCTGTAGTACCAGGCACCGATGGCGCTGAAGGGTACGCGC > 2:1162619/1‑150 GCAAACCTGCGCCCACACGGACTGTGCAATAAGCACAAATCCTGTGGGCGCGGGCTTGCCGGCGAAGA‑‑‑‑AGC‑CAGGCCTGCCTGAATCAGAAGCCCAGGCGATCGCGCAGGCTGTAGTACCAGGCACCGATGGCGCTGAAGGGTACGCGCA > 1:47410/1‑150 GCAAACCTGCGCCCACACGGACTGTGCAATAAGCACAAATCCTGTGGGCGCGGGCTTGCCGGCGAAGA‑‑‑‑AGC‑CAGGCCTGCCTGAATCAGAAGCCCAGGCGATCGCGCAGGCTGTAGTACCAGGCACCGATGGCGCTGAAGGGTACGCGCA > 1:3123497/1‑150 AAACCTGCGCCCACACGGACTGTGCAATAAGCACAAATCCTGTGGGCGCGGGCTTGCCGGCGAAGA‑‑‑‑GGC‑CAGGCCTGCCTGAATCAGAAGCCCAGGCGATCGCGCAGGCTGTAGTACCAGGCACCGATGGCGCTGAAGGGTACGCGCAGC > 2:462797/1‑150 AAACCTGCGCCCACACGGACTGTGCAATAAGCACAAATCCTGTGGGCGCGGGCTTGCCGGCGAAGA‑‑‑‑GGC‑CAGGCCTGCCTGAATCAGAAGCCCAGGCGATCGCGCAGGCTGTAGTACCAGGCACCGATGGCGCTGAAGGGTACGCGCAGC > 1:2835560/1‑150 CCTGCGCCCACACGGACTGTGCAATAAGCACAAATCCTGTGGGCGCGGGTTTGCCGGCGAAGA‑‑‑‑GGC‑CAGGCCTGCCTGAATCAGAAGCCCAGGCGATCGCGCAGGCTGTAGTACCAGGCACCGATGGCGCTGAAGGGTACGCGCAGCATC > 1:2174000/1‑150 CTGCGCCCACACGGACTGTGCAATAAGCACAAATCCTGTGGGCGCGGGTTTGCCGGCGAAGA‑‑‑‑GGC‑CAGGCCTGCCTGAATCAGAAGCCCAGGCGATCGCGCAGGCTGTAGTACCAGGCACCGATGGCGCTGAAGGGTACGCGCAGCATCT > 2:1055810/1‑150 CTGCGCCCACACGGACTGTGCAATAAGCACAAATCCTGTGGGCGCAGGTTTGCCGGCGAAGA‑‑‑‑GGC‑CAGGCCTGCCTGAATCAGAAGCCCAGGCGATCGCGCAGGCTGTAGTACCAGGCACCGATGGCGCTGAAGGGTACGCGCAGCATCT > 2:2576199/1‑150 CGCCCACACGGACTGTGCAATAAGCACAAATCCTGTGGGCGCAGGTTTGCCGGCGAAGA‑‑‑‑GGC‑CAGGCCTGCCTGAATCAGAAGCCCAGGCGATCGCGCAGGCTGTAGTACCAGGCACCGATGGCGCTGAAGGGTACGCGCAGCATCTGGC > 2:1371981/1‑150 GCCCACACGGACTGTGCAATAAGCACAAATCCTGTGGGCGCAGGTTTGCCGGCGAAGA‑‑‑‑GGC‑CAGGCCTGCCTGAATCAGAAGCCCAGGCGATCGCGCAGGCTGTAGTACCAGGCACCGATGGCGCTGAAGGGTACGCGCAGCATCTGGCC > 1:727945/1‑150 CCACACGGACTGTGCAATAAGCACAGTCCGTGTGGGCGCAGGTTTGCCGGCGAAGA‑‑‑‑GGC‑CAGGCCTGCCTGAATCAGAAGCCCAGGCGATCGCGCAGGCTGTAGTACCAGGCACCGATGGCGCTGAAGGGTACGCGCAGCATCTGGCCAC > 1:148666/1‑150 CCACACGGACTGTGCAATAAGCACAAATCCTGTGGGCGCGGGTTTGCCGGCGAAGA‑‑‑‑GGC‑CAGGCCTGCCTGAATCAGAAGCCCAGGCGATCGCGCAGGCTGTAGTACCAGGCACCGATGGCGCTGAAGGGTACGCGCAGCATCTGGCCAC > 1:3640332/1‑150 CACACGGACTGTGCAATAAGCACAAATCCTGTGGGCGCGGGTTTGCCGGCGAAGA‑‑‑‑GGC‑CAGGCCTGCCTGAATCAGAAGCCCAGGCGATCGCGCAGGCTGTAGTACCAGGCACCGATGGCGCTGAAGGGTACGCGCAGCATCTGGCCACC > 2:2606282/1‑150 ACGGACTGTGCAATAAGCACAAATCCTGTGGGCGCAGGTTTGCCGGCGAAGA‑‑‑‑GGC‑CAGGCCTGCCTGAATCAGAAGCCCAGGCGATCGCGCAGGCTGTAGTACCAGGCACCGATGGCGCTGAAGGGTACGCGCAGCATCTGGCCACCCGG > 1:2621453/1‑150 CGGACTGTGCAATAAGCACAAATCCTGTGGGCGCAGGTTTGCCGGCGAAGA‑‑‑‑GGC‑CAGGCCTGCCTGAATCAGAAGCCCAGGCGATCGCGCAGGCTGTAGTACCAGGCACCGATGGCGCTGAAGGGTACGCGCAGCATCTGGCCACCCGGG < 1:1371981/150‑1 TGTGCAATAAGCACAAATCCTGTGGGCGCGGGCTTGCCGGCGAAGA‑‑‑‑AGC‑CAGGCCTGCCTGAATCAGAAGCCCAGGCGATCGCGCAGGCTGTAGTACCAGGCACCGATGGCGCTGAAGGGTACGCGCAGCATCTGGCCACCCGGGAACGG > 1:1618139/1‑150 GTTTGCCGGCGAAGA‑‑‑‑GGC‑CAGGCCTGCCTGAATCAGAAGCCCAGGCGATCGCGCAGGCTGTAGTACCAGGCACCGATGGCGCTGAAGGGTACGCGCAGCATCTGGCCACCCGGGAACGGGTAGTGCGGCAGGCCGGCAAAGGCGTCGAAA < 2:2104294/150‑1 GTTTGCCGGCGAAGA‑‑‑‑GGC‑CAGGCCTGCCTGAATCAGAAGCCCAGGCGATCGCGCAGGCTGTAGTACCAGGCACCGATGGCGCTGAAGGGTACGCGCAGCATCTGGCCACCCGGGAACGGGTAGTGCGGCAGGCCGGCAAAGGCGTCGAAA < 2:2153933/150‑1 GTTTGCCGGCGAAGA‑‑‑‑GGC‑CAGGCCTGCCTGAATCAGAAGCCCAGGCGATCGCGCAGGCTGTAGTACCAGGCACCGATGGCGCTGAAGGGTACGCGCAGCATCTGGCCACCCGGGAACGGGTAGTGCGGCAGGCCGGCAAAGGCGTCGAAA < 2:2422815/150‑1 GTTTGCCGGCGAAGA‑‑‑‑GGC‑CAGGCCTGCCTGAATCAGAAGCCCAGGCGATCGCGCAGGCTGTAGTACCAGGCACCGATGGCGCTGAAGGGTACGCGCAGCATCTGGCCACCCGGGAACGGGTAGTGCGGCAGGCCGGCAAAGGCGTCGAAA < 1:2919409/150‑1 GTTTGCCGGCGAAGA‑‑‑‑GGC‑CAGGCCTGCCTGAATCAGAAGCCCAGGCGATCGCGCAGGCTGTAGTACCAGGCACCGATGGCGCTGAAGGGTACGCGCAGC < 2:1759261/99‑1 GTTTGCCGGCGAAGA‑‑‑‑GGC‑CAGGCCTGCCTGAATCAGAAGCCCAGGCGATCGCGCAGGCTGTAGTACCAGGCACCGATGGCGCTGAAGGGTACGCGCAGC > 1:1759261/1‑99 GCAGGCCTGGCCTCTTCGCCGGCAAACCTGCGCCCACACGGACTGTGCAATAAGCACAAATCCTGTGGGCGCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2796963‑2796889‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggTTTGCCGGCGAAGA‑‑‑‑GGC‑CAGGCCTGCCTGAATCAGAAGCCCAGGCGATCGCGCAGGCTGTAGTACCAGGCACCGATGGCGCTGAAGGGTACGCGCAGCATCTGGCCACCCGGGAACGGGTAGTGCGGCAGGCCGGCAAAGGCGTCGAAA > NC_002947/2796938‑2797086 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |