| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4079840 | 166 (0.840) | 13 (0.070) | 8/262 | NT | 7.4% | intergenic (+31/+42) | PP_3588/sdaC | Bcr/CflA family multidrug resistance transporter/serine:H+ symport permease |
| ? | NC_002947 | = 4079851 | 169 (0.900) | intergenic (+42/+31) | PP_3588/sdaC | Bcr/CflA family multidrug resistance transporter/serine:H+ symport permease | |||||
GTGTGGTCGCAGGTTTGGAAAGCGAGCTACCGGCCGGCTTGGGCGTGCTGTTCATGGTGGCCAGCCTGTGCGGAGGGTGGCTGCTTGCATGCACCAAGGATGATGGAATGCAACGCTGCTGAAACCTTGATCAGGCAAAAAAAATACCCGGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4079688‑4079840‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccgggtCGCTTGTCGCCACCCGGGTATTTTTTTTGCCTGATCAAGGTTTCAGCAGCGTTGCATTCCATCATCCTTGGTGCATGCAAGCAGCCACCCTCCGCACAGGCTGGCCACCATGAACAGCACGCCCAAGCCGGCCGGTAGCTCGCTTTCC < NC_002947/4079851‑4079704 GTGTGGTCGCAGGTTTGGAAAGCGAGCTACCGGCCGGCTTGGGCGTGCTGTTCATGGTGGCCAGCCTGTGCGGAGGGTGGCTGCTTGCATGCACCAAGGATGATGGAATGCAACGCTGCTGAAACCTTGATCAGGCAAAAAAAATACCCG > 2:87852/1‑150GTGTGGTCGCAGGTTTGGAAAGCGAGCTACCGGCCGGCTTGGGCGTGCTGTTCATGGTGGCCAGCCTGTGCGGAGGGTGGCTGCTTGCATGCACCAAGGATGATGGAATGCAACGCTGCTGAAACCTTGATCAGGCAAAAAAAATACCCG > 1:471985/1‑150 TGTGGTCGCAGGTTTGGAAAGCGAGCTACCGGCCGGCTTGGGCGTGCTGTTCATGGTGGCCAGCCTGTGCGGAGGGTGGCTGCTTTCATGCACCAAGGATGATGGAATGCAACGCTGCTGAAACCTTGATCAGGCAAAAAAAATACCCGG < 2:457651/150‑1 TGTGGTCGCAGGTTTGGAAAGCGAGCTACCGGCCGGCTTGGGCGTGCTGTTCATGGTGGCCAGCCTGTGCGGAGGGTGGCTGCTTGCATGCACCAAGGATGATGGAATGCAACGCTGCTGAAACCTTGATCAGGCAAAAAAAATACCCGG < 1:1475667/150‑1 TGTGGTCGCAGGTTTGGAAAGCGAGCTACCGGCCGGCTTGGGCGTGCTGTTCATGGTGGCCAGCCTGTGCGGAGGGTGGCTGCTTGCATGCACCAAGGATGATGGAATGCAACGCTGCTGAAACCTTGATCAGGCAAAAAAAATACCCGG < 2:450380/150‑1 TGTGGTCGCAGGTTTGGAAAGCGAGCTACCGGCCGGCTTGGGCGTGCTGTTCATGGTGGCCAGCCTGTGCGGAGGGTGGCTGCTTGCATGCACCAAGGATGATGGAATGCAACGCTGCTGAAACCTTGATCAGGCAAAAAAAATACCCGG < 2:450342/150‑1 TGTGGTCGCAGGTTTGGAAAGCGAGCTACCGGCCGGCTTGGGCGTGCTGTTCATGGTGGCCAGCCTGTGCGGAGGGTGGCTGCTTGCATGCACCAAGGATGATGGAATGCAACGCTGCTGAAACCTTGATCAGGCAAAAAAAATACCCGG < 1:3627974/150‑1 GTGGTCGCAGGTTTGGAAAGCGAGCTACCGGCCGGCTTGGGCGTGCTGTTCATGGTGGCCAGCCTGTGCGGAGGGTGGCTGCTTGCATGCACCAAGGATGATGGAATGCAACGCTGCTGAAACCTTGATCAGGCAAAAAAAATACCCGGG > 1:1630778/1‑150 TGGTCGCAGGTTTGGAAAGCGAGCTACCGGCCGGCTTGGGCGTGCTGTTCATGGTGGCCAGCCTGTGCGGAGGGTGGCTGCTTGCATGCACCAAGGATGATGGAATGCAACGCTGCTGAAACCTTGATCAGGCAAAAAAAATACCCGGGT > 1:3395890/1‑150 AGCGAGCTACCGGCCGGCTTGGGCGTGCTGTTCATGGTGGCCAGCCTGTGCGGAGGGTGGCTGCTTGCATGCACCAAGGATGATGGAATGCAACGCTGCTGAAACCTTGATCAGGCAAAAAGAATGCCCGGGTCGCTTGTCGCCACCCGG < 1:2617468/150‑1 AGCGAGCTACCGGCCGGCTTGGGCGTGCTGTTCATGGTGGCCAGCCTGTGCGGAGGGTGGCTGCTTGCATGCACCAAGGATGATGGAATGCAACGCTGCTGAAACCTTGATCAGGCAAAAAAAATACCCGGGTCGCTTGTCGCCACCCGG < 1:2530684/150‑1 AGCGAGCTACCGGCCGGCTTGGGCGTGCTGTTCATGGTGGCCAGCCTGTGCGGAGGGTGGCTGCTTGCATGCACCAAGGATGATGGAATGCAACGCTGCTGAAACCTTGATCAGGCAAAAAAAATACCCGGGTCGCTTGTCGCCACCCGG < 2:75795/150‑1 AGCGAGCTACCGGCCGGCTTGGGCGTGCTGTTCATGGTGGCCAGCCTGTGCGGAGGGTGGCTGCTTGCATGCACCAAGGATGATGGAATGCAACGCTGCTGAAACCTTGATCAGGCAAAAAAAATACCCGGGTCGCTTGTCGCCACCCGG < 1:779416/150‑1 GCGAGCTACCGGCCGGCTTGGGCGTGCTGTTCTTGGTGGCCAGCCTGTGCGGAGGGTGGCTGCTTGCATGCACCAAGGATGATGGAATGCAACGCTGCTGAAACCTTGATCAGGCAAAAAATATACCCGGGTCGCTTGTCGCCACCCGGG < 2:2205638/150‑1 AACGCTGCTGAAACCTTGATCAGGCAAAAAAAATACCCGGGTGGCGACAAGCGACCCGGGTATTTTTTTTGCCTGATCAAGGTTTCAGCAGCGTTGCATTCCATCATCCTTGGTGCATGCAAGCAGCCACCCTCCGCACAGGCTGGCCAC > 2:897254/1‑150 AACGCTGCTGAAACCTTGATCAGGCAAAAAAAATACCCGGGTGGCGACAAGCGACCCGGGTATTTTTTTTGCCTGATCAAGGTTTCAGCAGCGTTGCATTCCATCATCCTTGGTGCATGCAAGCAGCCACCCTCCGCACAGGCTGGCCAC > 1:1068180/1‑150 CTTGATCAGGCAAAAAAAATACCCGGGTGGCGCCAAGCGTCCCGGGTATTTTTTTTGCCTGATAAAGGTTTCAGCAGCGTTGCATTCCATCATCCTTGGTGCATGCAAGCAGCCACCCTCCGCACAGGCTGGCCACCATGAACAGCACGC > 2:2615809/1‑150 CTTGATCAGGCAAAAAAAATACCCGGGTGGCGACAAGCGACCCGGGTATTTTTTTTGCCTGATCAAGGTTTCAGCAGCGTTGCATTCCATCATCCTTGGTGCATGCAAGCAGCCACCCTCCGCACAGGCTGGCCACCATGAACAGCACGC > 2:296232/1‑150 CAGGCAAAAAAAATACCCGGGTGGCGACAAGCGACCCGGGTATTTTTTTTGCCTGATCAAGGTTTCAGCAGCGTTGCATTCCATCATCCTTGGTGCATGCAAGCAGCCACCCTCCGCACAGGCTGGCCACCATGAACAGCACGCCCAAGC > 1:2391676/1‑150 AAAAAAAATACCCGGGTCGCTTGTCGCCACCCGGGTATTTTTTTTGCCTGATCAAGGTTTCAGCAGCGTTGCATTCCATCATCCTTGGTGCATGCAAGCAGCCACCCTCCGCACAGGCTGGCCACCATGAACA < 1:4206830/133‑1 AAAAAAAATACCCGGGTCGCTTGTCGCCACCCGGGTATTTTTTTTGCCTGATCAAGGTTTCAGCAGCGTTGCATTCCATCATCCTTGGTGCATGCAAGCAGCCACCCTCCGCACAGGCTGGCCACCATGAACA > 2:4206830/1‑133 AAAAAAATACCCGGGTGGCGACAAGCGACCCGGGTATTTTTTTTGCCTGATCAAGGTTTCAGCAGCGTTGCATTCCATCATCCTTGGTGCATGCAAGCAGCCACCCTCCGCACAGGCTGGCCACCATGAACAGCACGCCCAAGCCGGCCG > 1:2431597/1‑150 CCGGGTCGCTTGTCGCCCCCCGGGTATTTTTTTTGCCTGATCAAGGTTTCAGCAGCGTTGCATTCCATCATCCGTGGTGCATGCAAGCAGCCACCCACCGCACAGGCTGGCCACCATGAACAGCACGCCCAAGCCGGCCGGGAGCGCGCT > 1:4373074/1‑150 CCGGGTCGCTTGTCGCCACCCGGGTATTTTTTTTTCCTGATCAAGGTTTCAGCAGCGTTGCAATCCAACAACCTTGGTGCATGCAAGCAGCCACCCACCGCACAGGCTGGCCACCATGAACAGCACGCCCAAGCCGGCCCGTAGCTCGCT > 1:2464544/1‑150 CCGGGTCGCTTGTCGCCACCCGGGTATTTTTTTTGCCTGATCAAGGTTTCAGCAGCGTTGCATTCCATCATCCTTGGTGCATGCAAGCAGCCACCCTCCGCACAGGCTGGCCACCATGAACAGCACGCCCAAGCCGGCCGGTAGCTCGCT < 1:826143/150‑1 CCGGGTCGCTTGTCGCCACCCGGGTATTTTTTTTGCCTGATCAAGGTTTCAGCAGCGTTGCATTCCATCATCCTTGGTGCATGCAAGCAGCCACCCTCCGCACAGGCTGGCCACCATGAACAGCACGCCCAAGCCGGCCGGTAGCTCGCT > 2:155912/1‑150 CGGGTCGCTTGTCGCCACCCGGGTATTTTTTTTGCCTGATAAATGTTTAATCAGCGTTGCATTCCATCATACTTGGTGCATGCAATCAGCCACCCTCCGCACAGGCTTTCCACCATGAACAGCACGCCCAAGCCGGCCGGTAGCTCGCTT > 1:3775712/1‑150 CGGGTCGCTTGTCGCCACCCGGGTATTTTTTTTGCCTGATAAAGGTTTCAGCAGCGTTGCATTCCAACATCCTTGGTGCATGCAAGCAGCCACCCACCCCACAGGCAGGCCACCAAGAACAGCACGCCCAAGCCGGCCGGTAGCTCGCTT > 1:1521438/1‑150 CGGGTCGCTTGTCGCCACCCCGGTATTTTTTTTTCCTGATAAATGTTTAAGCAGCGTTGCATTCCATCATCCTTGGTGCATGCAAGCAGCCACCCTCCGCACAGGCTGGCCACCATGAACAGCACGCCCAACCCGGCCCGTAGCACGCTT > 1:3775352/1‑150 GGGTCGCTTGTCGCCACCCGGGTATTTTTTTTGCCTGATCAAGGTTTCAGCAGCGTTGCATTCCATCATCCTTGGTGCATGCAAGCAGCCACCCTCCGCACAGGCTGGCCACCATGAACAGCACGCCCAAGCCGGCCGGTAGCTCGCTTg > 2:693245/1‑149 GGGTCACTTGTCGCCACCCGGGTATTTTTTTTGCCTGATCAAGGTTTCAGCAGCGTTGCATTCCATCATCCTTGGTGCATGCAAGCAGCCACCCTCCGCACAGGCTGGCCACCATGAACAGCACGCCCAAGCCGGCCGGTAGCTCGCTTT > 2:693209/1‑150 GTCGCTTGTCGCCACCCGGGTATTTTTTTTGCCTGATCAAGGTTTCAGCAGCGTTGCATTCCATCATCCTTGGTGCATGCAAGCAGCCACCCTCCGCACAGGCTGGCCACCATGAACAGCACGCCCAAGCCGGCCGGTAGCTCGCTTTCC > 1:1692044/1‑150 GTGTGGTCGCAGGTTTGGAAAGCGAGCTACCGGCCGGCTTGGGCGTGCTGTTCATGGTGGCCAGCCTGTGCGGAGGGTGGCTGCTTGCATGCACCAAGGATGATGGAATGCAACGCTGCTGAAACCTTGATCAGGCAAAAAAAATACCCGGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4079688‑4079840‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccgggtCGCTTGTCGCCACCCGGGTATTTTTTTTGCCTGATCAAGGTTTCAGCAGCGTTGCATTCCATCATCCTTGGTGCATGCAAGCAGCCACCCTCCGCACAGGCTGGCCACCATGAACAGCACGCCCAAGCCGGCCGGTAGCTCGCTTTCC < NC_002947/4079851‑4079704 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |