New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5212189 =	143 (0.730)	14 (0.080)	7/244	NT	10.9%	intergenic (‑85/+93)	rnd/PP_4592	ribonuclease D/metal dependent hydrolase
	?	NC_002947	5212280 =	102 (0.590)					intergenic (‑176/+2)	rnd/PP_4592	ribonuclease D/metal dependent hydrolase

TACCGAGCTCTACCAGCAGTCGCTGGACATGTTTGCCGGTTGCCGGCCTTGGCTGGCGGCCAAGCGCTGAAGCCCTGTGGGAGCGGGCACGCCCGCGAACCCGGGCAAACCCGGGCCATACACCGTG‑TTGCCTTCATTCGCGGGCGCGCCCGCTCCCACAGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5212351‑5212189 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccgctcccacagggCTTCAGCGCTTGGCCGCCAGCCAAGGCCGGCAACCGGCAAACATGTCCAGCGACTGCTGGTAGAGCTCGGTATGTACCTGCAACAGGCCAAGCATCGAGTGGAACAGGTTGTCCTGGGACAGCGGGGCATCGCTGAGCCGTGCCAGG  >  NC_002947/5212280‑5212426                                                                                                                                                                                                                                                                                                                         TACCGAGCTCTACCAGCAGTCGCTGGACATGTTTGCCGGTTGCCGGCCTTGGCTGGCGGCCAAGCGCTGAAGCCCTGTGGGAGCGGGCACGCCCGCGAACCCGGGCAAACCCGGGCCATACACCGTG‑TTGCCTTCATTCGCGGGCGCGCC                                                                                                                                                                  <  2:4465647/150‑1    CGAGCTCTACCAGCAGTCGCTGGACATGTTTGCCGGTTGCCGGCCTTGGCTGGCGGCCAAGCGCTGAAGCCCTGTGGGAGCGGGCACGCCCGCGAACCCGGGCAAACCCGGGCCATACACCGTG‑TTGCCTTCATTCGCGGGCGCGCCCGC                                                                                                                                                               >  2:1342990/1‑150      AGCTCTACCAGCAGTCGCTGGACATGTTTGCCGGTTGCCGGCCTTGGCTGGCGGCCAAGCGCTGAAGCCCTGTGGGAGCGGGCACGCCCGCGAACCCGGGCAAACCCGGGCCATACACCGTG‑TTGCCTTCATTCGCGGGCGCGCCCGCTC                                                                                                                                                             <  1:984309/150‑1      AGCTCTACCAGCAGTCGCTGGACATGTTTGCCGGTTGCCGGCCTTGGCTGGCGGCCAAGCGCTGAAGCCCTGTGGGAGCGGGCACGCCCGCGAACCCCGGCAAACCCGGGCCATAAACCGTG‑GTGGCGTCATTCGCGGGCGCGCCCGCgc                                                                                                                                                             >  1:1041362/1‑148        CTCTACCAGCAGTCGCTGGACATGTTTGCCGGTTGCCGGCCTTGGCTGGCGGCCAAGCGCTGAAGCCCTGTGGGAGCGGGCACGCCCGCGAACCCGGGCAAACCCGGGCCATACACCGTG‑TTGCCTTCATTCGCGGGCGCGCCCGCTCCC                                                                                                                                                           <  2:1026869/150‑1        CTCTACCAGCAGTCGCTGGACATGTTTGCCGGTTGCCGGCCTTGGCTGGCGGCCAAGCGCTGAAGCCCTGTGGGAGCGGGCACGCCCGCGAACCCGGGCAAACCCGGGCCATACACCGTG‑GTGCCTTCATTCGCGGGCGCGCCCGCGCCC                                                                                                                                                           >  1:4114271/1‑150        CTCGACCAGCAGTCGCTGGACATGTGTGCCGGTTGCCGGCCTTGGCTGGCGGCCAAGCGCTGAAGCCCTGTGGGAGCGGGCACGCCCGCGAACCCGGGCAAACCCGGGCCATACACCGTG‑TTGCCTTCATTCGCGGGCGCGCCCGCTCCC                                                                                                                                                           <  2:3315978/150‑1         TCTACCAGCAGTCGCTGGACATGTTTGCCGGTTGCCGGCCTTGGCTGGCGGCCAAGCGCTGAAGCCCTGTGGGAGCGGGCACGCCCGCGAACCCGGGCAAACCCGGGCCATACACCGTG‑TTGCCTTCATTCGCGGGCGCGCCCGCTCCCA                                                                                                                                                          >  2:2181275/1‑150           TACCAGCAGTCGCTGGACATGTTTGCCGGTTGCCGGCCTTGGCTGGCGGCCAAGCGCTGAAGCCCTGTGGGAGCGGGCACGCCCGCGAACCCGGGCAAACCCGGGCCATACACCGTG‑TTGCCTTCATTCGCGGGCGCGCCCGCgaatgaa                                                                                                                                                        <  2:3931190/150‑8           TACCAGCAGTCGCTGGACATGTTTGCCGGTTGCCGGCCTTGGCTGGCGGCCAAGCGCTGAAGCCCTGTGGGAGCGGGCACGCCCGCGAACCCGGGCAAACCCGGGCCATACACCGTG‑TTGCCTTCATTCGCGGGCGCGCCCGCTCCCACA                                                                                                                                                        <  2:2784246/150‑1           TACCAGCAGTCGCTGGACATGTTTGCCGGTTGCCGGCCTTGGCTGGCGGCCAAGCGCTGAAGCCCTGTGGGAGCGGGCACGCCCGCGAACCCGGGCAAACCCGGGCCATACACCGTG‑TTGCCTTCATTCGCGGGCGCGCCCGCTCCCACA                                                                                                                                                        <  1:2895602/150‑1           TACCAGCAGTCGCTGGACATGTTTGCCGGTTGCCGGCCTTGGCTGGCGGCCAAGCGCTGAAGCCCTGTGGGAGCGGGCACGCCCGCGAACCCGGGCAAACCCGGGCCATACACCGTG‑TTGCCTTCATTCGCGGGCGCGCCCGCTCCCACA                                                                                                                                                        >  2:1704157/1‑150           TACCAGCAGTCGCTGGACATGTTTGCCGGTTGCCGGCCTTGGCTGGCGGCCAAGCGCTGAAGCCCTGTGGGAGCGGGCACGCCCGCGAACCCGGGCAAACCCGGGCCATACACCGTG‑TTGCCTTCATTCGCGGGCGCGCCCGCTCCCACA                                                                                                                                                        >  2:1451884/1‑150           TACCAGCAGTCGCTGGACATGTTTGCCGGTTGCCGGCCTTGGCTGGCGGCCAAGCGCTGAAGCCCTGTGGGAGCGGGCACGCCCGCGAACCCGGGCAAACCCGGGCCATACACCGTG‑TTGCCTTCATTCGCGGGCGCGCCCGCTCCCACA                                                                                                                                                        <  1:3549481/150‑1            ACCAGCAGTCGCTGGACATGTTTGCCGGTTGCCGGCCTTGGCTGGCGGCCAAGCGCTGAAGCCCTGTGGGAGCGGGCACGCCCGCGAACCCGGGCAAACCCGGGCCATACACCGTG‑TTGCCTTCATTCGCGGGCGCGCCCGCTCCCACAG                                                                                                                                                       <  1:3052967/150‑1            ACCAGCAGTCGCTGGACATGTTTGCCGGTTGCCGGCCTTGGCTGGCGGCCAAGCGCTGAAGCCCTGTGGGAGCGGGCACGCCCGCGAACCCGGGCAAACCCGGGCCATACACCGTG‑TTGCCTTCATTCGCGGGCGCGCCCGCTCCCACAG                                                                                                                                                       <  2:4003322/150‑1             CCAGCAGTCGCTGGACATGTTTGCCGGTTGCCGGCCTTGGCTGGCGGCCAAGCGCTGAAGCCCTGTGGGAGCGGGCACGCCCGCGAACCCGGGCAAACCCGGGCCATACACCGTG‑TTGCCTTCATTCGCGGGCGCGCCCGCTCCCACAGG                                                                                                                                                      <  1:3269604/150‑1                                                                           CTGTGGGAGCGGGCACGCCCGCGAACCCGGGCAAACCCGGGCCATACACCGTG‑TTGCCTTCATTCGCGGGCGCGCCCGCTCCCACAGGGCTTCAGCGCTTGGCCGCCAGCCAAGGCCGGCAACCGGCAAACATGTCCAGCGACTGCTGGT                                                                                        >  2:2155369/1‑150                                                                                     GGGCACGCCCGCGAACCCGGGCAAACCCGGGCCATACACCGTG‑TTGCCTTCATTCGCGGGCGCGCCCGCTCCCACAGGGCTTCAGCGCTTGGCCGCCAGCCAAGGCCGGCAACCGGCAAACATGTCCAGCGACTGCTGGTAGAGCTCGGT                                                                              >  1:418550/1‑150                                                                                     GGGCACGCCCGCGAACCCGGGCAAACCCGGGCCATACACCGTG‑TTGCCTTCATTCGCGGGCGCGCCCGCTCCCACAGGGCTTCAGCGCTTGGCCGCCAGCCAAGGCCGGCAACCGGCAAACATGTCCAGCGACTGCTGGTAGAGCTCGGT                                                                              >  1:632001/1‑150                                                                                      GGCACGCCCGCGAACCCGGGCAAACCCGGGCCATACACCGTG‑TTGCCTTCATTCGCGGGCGCGCCCGCTCCCACAGGGTTTCAGCGCTTGGCCGCCAGCCAAGGCCGGCAACCGGCAAACATGTCCAGCGACTGCTGGTAGAGCTCGGTA                                                                             >  1:1004292/1‑150                                                                                      GGCACGCCCGCGAACCCGGGCAAACCCGGGCCATACACCGTG‑TTGCCTTCATTCGCGGGCGCGCCCGCTCCCACAGGGTTTCAGCGCTTGGCCGCCAGCCAAGGCCGGCAACCGGCAAAAATGTCCAGCGACTGCTGGTAGAGCTCGGTA                                                                             >  1:1004260/1‑150                                                                                             CCGCGAACCCGGGCAAACCCGGGCCATACACCGTG‑TTGCCTTCATTCGCGGGCGCGCCCGCTCCCACAGGGCTTCAGCGCTTGGCCGCCAGCCAAGGCCGGCAACCGGCAAACATGTCCAGCGACTGCTGGTAGAGCTCGGTATGTACCT                                                                      >  1:472042/1‑150                                                                                             CCGCGAACCCGGGCAAACCCGGGCCATACACCGTG‑TTGCCTTCATTCGCGGGCGCGCCCGCTCCCACAGGGCTTCAGCGCTTGGCCGCCAGCCAAGGCCGGCAACCGGCAAACATGTCCAGCGACTGCTGGTAGAGCTCGGTATGTACCT                                                                      >  1:3264385/1‑150                                                                                                 GAACCCGGGCAAACCCGGGCCATACACCGTG‑TTGCCTTCATTCGCGGGCGTGCCCGCTCCCACAGGGCTTCAGCGCTTGGCCGCCAGCCAAGGCCGGCAACCGGCAAACATGTCCAGCGACTGCTGGTAGAGCTCGGTATGTACCTGCAA                                                                  >  2:1225359/1‑150                                                                                                     CCGGGCAAACCCGGGCCATACACCGTGTTTGCCCGGGTTCGCGGGCGTGCCCGCTCCCACAGGGCTTCAGCGCTTGGCCGCCAGCCAAGGCCGGCAACCGGCAAACATGTCCAGCGACTGCTGGTAGAGCTCGGTATGTACCTGCAACAG                                                               >  2:900286/1‑150                                                                                                     CCGGGCAAACCCGGGCCATACACCGTGTTTGCCCGGGTTCGCGGGCGTGCCCGCTCCCACAGGGCTTCAGCGCTTGGCCGCCAGCCAAGGCCGGCAACCGGCAAACATGTCCAGCGACTGCTGGTAGAGCTCGGTATGTACCTGCAACAG                                                               >  2:900247/1‑150                                                                                                     CCGGGCAAACCCGGGCCATACACCGTGTTTGCCCGGGTTCGCGGGCGTGCCCGCTCCCACAGGGCTTCAGCGCTTGGCCGCCAGCCAAGGCCGGCAACCGGCAAACATGTCCAGCGACTGCTGGTAGAGCTCGGTATGTACCTGCAACAG                                                               >  2:900248/1‑150                                                                                                                 GGGCCATACACCGTG‑TTGCCTTCATTCGCGGGCGCGCCCGCTCCCACAGGGCTTCAGCGCTTGGCCGCCAGCCAAGGCCGGCAACCGGCAAACATGTCCAGCGACTGCTGGTAGAGCTCGGTATGTACCTGCAACAGGCCAAGCATCGAG                                                  >  2:2982691/1‑150                                                                                                                        ACACCGTG‑TTGCCTTCATTCGCGGGCGCGCCCGCTCCCACAGGGCTTCAGCGCTTGGCCGCCAGCCAAGGCCGGCAACCGGCAAACATGTCCAGCGACTGCTGGTAGAGCTCGGTATGTACCTGCAACAGGCCAAGCATCGAGTGGAACA                                           <  1:2155369/150‑1                                                                                                                                        ggggCGCGGGCGGGCCCGCTCCCACAGGGCTTCAGCGCTTGGCCGCCAGCCAAGGCCGGCAACCGGCAAACATGTCCAGCGACTGCTGGTAGAGCTCGGTATGTACCTGCAACAGGCCAAGCATCGAGTGGAACAGGTTGTCCTGGGACA                            <  1:954192/146‑1                                                                                                                                                   ggGCCCGCTCCCACAGGGCTTCAGCGCTTGGCCGCCAGCCAAGGCCGGCAACCGGCAAACATGTCCAGCGACTGCTGGTAGAGCTCGGTATGTACCTGCAACAGGCCAAGCATCGAGTGGAACAGGTTGTCCTGGGACAGCGGGGCATCG                 <  1:1254992/148‑1                                                                                                                                                     cCCCGCTCCCACAGGGCTTCAGCGCTTGGCCGCCAGCCAAGGCCGGCAACCGGCAAACATGTCCAGCGACTGCTGGTAGAGCTCGGTATGTACCCGCAACAGGCCAAGCATCGAGTGGAACAGGTTGTCCTGGGACAGCGGGGCATCGCT               <  1:2657006/149‑1                                                                                                                                                     GCCCGCTCCCACAGGGCTTCAGCGCTTGGCCGCCAGCCAAGGCCGGCAACCGGCAAACATGTCCAGCGACTGCTGGTAGAGCTCGGTATGTACCCGCAACAGGCCAAGCATCGAGTGGAACAGGTTGTCCTGGGACAGCGGGGCATCGCT               <  1:2656969/150‑1                                                                                                                                                     GCCCGCTCCCACAGGGCTTCAGCGCTTGGCCGCCAGCCAAGGCCGGCAACCGGCAAACATGTCCAGCGACTGCTGGTAGAGCTCGGTATGTACCCGCAACAGGCCAAGCATCGAGTGGAACAGGTTGTCCTGGGACAGCGGGGCATCGCT               <  1:2657177/150‑1                                                                                                                                                     GCCCGCTCCCACAGGGCTTCAGCGCTTGGCCGCCAGCCAAGGCCGGCAACCGGCAAACATGTCCAGCGACTGCTGGTAGAGCTCGGTATGTACCCGCAACAGGCCAAGCATCGAGTGGAACAGGTTGTCCTGGGACAGCGGGGCATCGCT               <  1:2699493/150‑1                                                                                                                                                       CCGCTCCCACAGGGCTTCAGCGCTTGGCCGCCAGCCAAGGCCGGCAACCGGCAAACATGTCCAGCGACTGCTGGTAGAGCTCGGTATGTACCTGCAACAGGCCAAGCATCGAGTGGAACAGGTTGTCCTGGGACAGCGGGGCATCGCTta             >  1:3508151/1‑148                                                                                                                                                       CCGCTCCCACAGGGCTTCAGCGCTTGGCCGCCAGCCAAGGCCGGCAACCGGCAAACATGTCCAGCGACTGCTGGTAGAGCTCGGTATGTACCTGCAACAGGCCAAGCATCGAGTGGAACAGGTTGTCCTGGGACAGCGGGGCATCGCTGA             >  2:606753/1‑150                                                                                                                                                             CCACAGGGCTTCAGCGCTTGGCCGCCAGCCAAGGCCGGCAACCGGCAAACATGTCCAGCGACTGCTGGTAGAGCTCGGTATGTACCTGCAACAGGCCAAGCATCGAGTGGAACAGGTTGTCCTGGGACAGCGGGGCATCGCTGAGCCGTG       >  2:4344087/1‑150                                                                                                                                                              CACAGGGCTTCAGCGCTTGGCCGCCAGCCAAGGCCGGCAACCGGCAAACATGTCCAGCGACTGCTGGTAGAGCTCGGTATGTACCTGCAACAGGCCAAGCATCGAGTGGAACAGGTTGTCCTGGGACAGCGGGGCATCGCTGAGCCGTGC      >  2:3998710/1‑150                                                                                                                                                              CACAGGGCTTCAGCGCTTGGCCGCCAGCCAAGGCCGGCAACCGGCAAACATGTCCAGCGACTGCTGGTAGAGCTCGGTATGTACCTGCAACAGGCCAAGCATCGAGTGGAACAGGTTGTCCTGGGACAGCGGGGCATCGCTGAGCCGTGC      >  1:3906102/1‑150                                                                                                                                                              CACAGGGCTTCAGCGCTTGGCCGCCAGCCAAGGCCGGCAACCGGCAAACATGTCCAGCGACTGCTGGTAGAGCTCGGTATGTACCTGCAACAGGCCAAGCATCGAGTGGAACAGGTTGTCCTGGGACAGCGGGGAATCGCTGAGCCGTGC      >  2:2890304/1‑150                                                                                                                                                               ACAGGGCTTCAGCGCTTGGCCGCCAGCCAAGGCCGGCAACCGGCAAACATGTCCAGCGACTGCTGGTAGAGCTCGGTATGTACCTGCAACAGGCCAAGCATCGAGTGGAACAGGTTGTCCTGGGACAGCGGGGCATCGCTGAGCCGTGCC     <  1:552624/150‑1                                                                                                                                                                CAGGGCTTCAGCGCTTGGCCGCCAGCCAAGGCCGGCAACCGGCAAACATGTCCAGCGACTGCTGGTAGAGCTCGGTATGTACCTGCAACAGGCCAAGCATCGAGTGGAACAGGTTGTCCTGGGACAGCGGGGCATCGCTGAGCCGTGCCA    <  1:2835437/150‑1                                                                                                                                                                CAGGGCTTCAGCGCTTGGCCGCCAGCCAAGGCCGGCAACCGGCAAACATGTCCAGCGACTGCTGGTAGAGCTCGGTATGTACCTGCAACAGGCCAAGCATCGAGTGGAACAGGTTGTCCTGGGACAGCGGGGCATCGCTGAGCCGTGCCA    <  2:632001/150‑1                                                                                                                                                                 AGGGCTTCAGCGCTTGGCCGCCAGCCAAGGCCGGCAACCGGCAAACATGTCCAGCGACTGCTGGTAGAGCTCGGTATGTACCTGCAACAGGCCAAGCATCGAGTGGAACAGGTTGTCCTGGGACAGCGGGGCATCGCTGAGCCGTGCCAG   >  1:2661481/1‑150                                                                                                                                                                 AGGGCTTCAGCGCTTGGCCGCCAGCCAAGGCCGGCAACCGGCAAACATGTCCAGCGACTGCTGGTAGAGCTCGGTATGTACCTGCAACAGGCCAAGCATCGAGTGGAACAGGTTGTCCTGGGACAGCGGGGCATCGCTGAGCCGTGCCAG   >  1:753117/1‑150                                                                                                                                                                  GGGCTTCAGCGCTTGGCCGCCAGCCAAGGCCGGCAACCGGCAAACATGTCCAGCGACTGCTGGTAGAGCTCGGTATGTACCTGCAACAGGCCAAGCATCGAGTGGAACAGGTTGTCCTGGGACAGCGGGGCATCGCTGAGCCGTGCCAGG  <  1:94391/150‑1                                                                                                                                                                                                                                                                                                                         TACCGAGCTCTACCAGCAGTCGCTGGACATGTTTGCCGGTTGCCGGCCTTGGCTGGCGGCCAAGCGCTGAAGCCCTGTGGGAGCGGGCACGCCCGCGAACCCGGGCAAACCCGGGCCATACACCGTG‑TTGCCTTCATTCGCGGGCGCGCCCGCTCCCACAGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5212351‑5212189 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccgctcccacagggCTTCAGCGCTTGGCCGCCAGCCAAGGCCGGCAACCGGCAAACATGTCCAGCGACTGCTGGTAGAGCTCGGTATGTACCTGCAACAGGCCAAGCATCGAGTGGAACAGGTTGTCCTGGGACAGCGGGGCATCGCTGAGCCGTGCCAGG  >  NC_002947/5212280‑5212426

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.