| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5876526 = | 218 (1.110) | 11 (0.060) | 8/254 | NT | 5.8% | intergenic (‑40/+108) | PP_5148/ilvA‑II | membrane protein/threonine deaminase |
| ? | NC_002947 | 5876608 = | 154 (0.850) | intergenic (‑122/+26) | PP_5148/ilvA‑II | membrane protein/threonine deaminase | |||||
CCCGTACTGGGACGAGACCGAAAACCCGGCCTACAAACTGTTCCTGGGCTGAGCGGCTAAGCTAGGGCTGATGGCCCTTTCGCGGGCTTGCCCGCTCCCACAGGTACTGCGCAGGCCTCAAGGCCTGAGATACCTTGGCAGGAGCGGGTAAGCCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5876685‑5876526‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagcccgcgaaAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGTCTCGTCCCAGTACGGGTAACCGATCTTGGCCAGCGCTGCCGGCACCAGGTGACGTTCGTCCTCCGGCACCTGCAGCCCCGCCACCAC > NC_002947/5876608‑5876756 CCCGTACTGGGACGAGACCGAAAACCCGGCCTACAAACTGTTCCTGGGCTGAGCGGCTAAGCTAGGGCTGATGGCCCTTTCGCGGGCTTGCCCGCTCCCACAGGTACTGCGCAGGCCTCAAGGCCTGAGATACCTTGGCAGGAGCGGGTA > 2:1134076/1‑150 CCGTACTGGGACGAGACCGAAAACCCGGCCTACAAACTGTTCCTGGGCTGAGCGGCTAAGCTAGGGCTGATGGCCCTTTCGCGGGCTTGCCCGCTCCCACAGGTACTGCGCAGGCCTCAAGGCCTGAGATACCTTGGCAGGAGCGGGTAA > 2:1901557/1‑150 CCGTACTGGGACGAGACCGAAAACCCGGCCTACAAACTGTTCCTGGGCTGAGCGGCTAAGCTAGGGCTGATGGCCCTTTCGCGGGCTTGCCCGCTCCCACAGGTACTGCGCAGGCCTCAAGGCCTGAGATACCTTGGCAGGAGCGGGTAA > 1:1853694/1‑150 CCGTACTGGGACGAGACCGAAAACCCGGCCTACAAACTGTTCCTGGGCTGAGCGGCTAAGCTAGGGCTGATGGCCCTTTCGCGGGCTTGCCCGCTCCCACAGGTACTGCGCAGGCCTCAAGGCCTGAGATACCTTGGCAGGAGCGGGTAA > 2:4508259/1‑150 CCGTACTGGGACGAGACCGAAAACCCGGCCTACAAACTGTTCCTGGGCTGAGCGGCTAAGCTAGGGCTGATGGCCCTTTCGCGGGCTTGCCCGCTCCCACAGGTACTGCGCAGGCCTCAAGGCCTGAGATACCTTGGCAGGAGCGGGTAA < 1:3368927/150‑1 CCGTACTGGGACGAGACCGAAAACCCGGCCTACAAACTGTTCCTGGGCTGAGCGGCTAAGCTAGGGCTGATGGCCCTTTCGCGGGCTTGCCCGCTCCCACAGGTACTGCGCAGGCCTCAAGGCCTGAGATACCTTGGCAGGAGCGGGTAA > 1:3385788/1‑150 CCGTACTGGGACGAGACCGAAAACCCGGCCTACAAACTGTTCCTGGGCTGAGCGGCTAAGCTAGGGCTGATGGCCCTTTCGCGGGCTTGCCCGCTCCCACAGGTACTGCGCAGGCCTCAAGGCCTGAGATACCTTGGCAGGAGCGGGTAA > 2:1045499/1‑150 CCGTACTGGGACGAGACCGAAAACCCGGCCTACAAACTGTTCCTGGGCTGAGCGGCTAAGCTAGGGCTGATGGCCCTTTCGCGGGCTTGCCCGCTCCCACAGGTACTGCGCAGGCCTCAAGGCCTGAGATACCTTGGCAGGAGCGGGTAA < 1:542612/150‑1 CCGTACTGGGACGAGACCGAAAACCCGGCCTACAAACTGATCCTGGGCTGAGCGGCTAAGCTAGGGCTGATGGCCCTTTCGCGGGCTTGCCCGCTCCCACACGTACTGCGCAGGCCTCAAGGCCTGAGATACCTTGGCAGGAGCGGGTAA > 1:1853736/1‑150 CTGGGACGAGACCGAAAACCCGGCCTACAAACTGTTCCTGGGCTGAGCGGCTAAGCTAGGGCTGATGGCCCTTTCGCGGGCTTGCCCGCTCCCACAGGTACTGCGCAGGCCTCAAGGCCTGAGATACCTTGGCAGGAGCGGGTAAGCCCG < 1:3100319/150‑1 TGGGACGAGACCGAAAACCCGGCCTACAAACTGTTCCTGGGCTGAGCGGCTAAGCTAGGGCTGATGGCCCTTTCGCGGGCTTGCCCGCTCCCACAGGTACTGCGCAGGCCTCAAGGCCTGAGATACCTTGGCAGGAGCGGGTAAGCCCGC > 1:1627773/1‑150 GGACGAGACCGAAAACCCGGCCTACAAACTGTTCCTGGGCTGAGCGGCTAAGCTAGGGCTGATGGCCCTTTCGCGGGCTTGCCCGCTCCCACAGGTACTGCGCAGGCCTCAAGGCCTGAGATACCTTGGCAGGAGCGGGTAAGCCCGCGA < 2:2567418/150‑1 GGACGAGACCGAAAACCCGGCCTACAAACTGTTCCTGGGCTGAGCGGCTAAGCTAGGGCTGATGGCCCTTTCGCGGGCTTGCCCGCTCCCACAGGTACTGCGCAGGCCTCAAGGCCTGAGATACCTTGGCAGGAGCGGGTAAGCCCGCGA < 2:2685680/150‑1 GACGAGACCGAAAACCCGGCCTACAACCTGTTCCTGGGCTGAGCGGCTAAGCTAGGGCTGATGGCCCTTTCGCGGGCTTGCCCGCTCCCACAGGTACTGCGCAGGCCTCAAGGCCTGAGATACCTTGGCAGGAGCGGGTAAGCCCGCGAA < 2:4434679/150‑1 CGAAAACCCGGCCTACAAACTGTTCCTGGGCTGAGCGGCTAAGCTAGGGCTGATGGCCCTTTCGCGGGCTTGCCCGCTCCCACAGGTACTGCGCAGGCCTCAAGGCCTGAGATACCTTGGCAGGAGCGGGTAAGCCCGCG > 2:2522544/1‑140 CGAAAACCCGGCCTACAAACTGTTCCTGGGCTGAGCGGCTAAGCTAGGGCTGATGGCCCTTTCGCGGGCTTGCCCGCTCCCACAGGTACTGCGCAGGCCTCAAGGCCTGAGATACCTTGGCAGGAGCGGGTAAGCCCGCG < 1:2522544/140‑1 CCGGCCTACAAACTGTTCCTGGGCTGAGCGGCTAAGCTAGGGCTGATGGCCCTTTCGCGGGCTTGCCCGCTCCCACAGGTACTGCGCAGGCCTCAAGGCCTGAGATACCTTGGCAGGAGCGGGTAAGCCCGCG‑AAGGGCCATCAGCCCTA < 2:3635260/150‑1 ATGGCCCTTTCGCGGGCTTGCCCGCTCCCACAGGTACTGCGCAGGCCTCAAGGCCTGAGATACCTTGGCAGGAGCGGGTAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCG > 2:1173417/1‑150 CCCTTTCGCGGGCTTGCCCGCTCCCACAGGTACTGCGCAGGCCTCAAGGCCTGAGATACCTTGGCAGGAGCGGGTAAGCCCGCAAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGTCT > 1:3811773/1‑150 TTTCGCGGGCTTGCCCGCTCCCACAGGTACTGCGCAGGCCTCAAGGCCTGAGATACCTTGGCAGGAGCGGGTAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGTCTCGT > 2:1098389/1‑150 GGGCTTGCCCGCTCCCACAGGTACTGCGCAGGCCTCAAGGCCTGAGATACCTTGGCAGGAGCGGGTAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGTCTCGTCCCAGT > 1:2332047/1‑150 CTTGCCCGCTCCCACAGGTACTGCGCAGGCCTCAAGGCCTGAGATACCTTGGCAGGAGCGGGTAAGCCCGCGAAGGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGTCTCGTCCCAGTACG > 1:42886/1‑150 TTGCCCGCTCCCACAGGTACTGCGCAGGCCTCAAGGCCTGAGATACCTTGGCAGGAGCGGGTAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACATTTTGTAGGCCGGGTTTTCGGTCTCGTCCCAGTACGG > 1:588589/1‑150 TTGCCCGCTCCCACAGGTACTGCGCAGGCCTCAAGGCCTGAGATACCTTGGCAGGAGCGGGTAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGTCTCGTCCCAGTACGG > 1:668898/1‑150 TTGCCCGCTCCCACAGGTACTGCGCAGGCCTCAAGGCCTGAGATACCTTGGCAGGAGCGGGTAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGTCTCGTCCCAGTACGG > 1:2766619/1‑150 CCCGCTCCCACAGGTACTGCGCAGGCCTCAAGGCCTGAGATACCTTGGCAGGAGCGGGTAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGTCTCGTCCCAGTACGGGTA > 2:549072/1‑150 CCCGCTCCCACAGGTACTGCGCAGGCCTCAAGGCCTGAGATACCTTGGCAGGAGCGGGCAAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGTCTCGTCCCAGTACGGGTA > 2:3862895/1‑150 AAGCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGTCTCGTCCCAGTACGGGTAACCGATCTTGGCCAGCGCTGCCGGCACCAGGTGACGTTCGTCCTCCGGCACCTGCAGCC > 1:1425711/1‑150 GCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGTCTCGTCCCAGTACGGGTAACCGATCTTGGCCAGCGCTGCCGGCACCAGGTGACGTTCGTCCTCCGGCACCTGCAGCCCC < 2:1274008/150‑1 GCCCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGTCTCGTCCCAGTACGGGTAACCGATCTTGGCCAGCGCTGCCGGCACCAGGTGACGTTCGTCCTCCGGCACCTGCAGCCCC < 1:849624/150‑1 CCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGTCTCGTCCCAGTACGGGTAACCGATCTTGGCCAGCGCTGCCGGCACCAGGTGACGTTCGTCCTCCGGCACCTGCAGCCCCGC > 2:2008347/1‑150 CCGCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGTCTCGTCCCAGTACGGGTAACCGATCTTGGCCAGCGCTGCCGGCACCAGGTGACGTTCGTCCTCCGGCACCTGCAGCCCCGC < 1:1158336/150‑1 GCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGTCTCGTCCCAGTACGGGTAACCGATCTTGGCCAGCGCTGCCGGCACCAGGTGACGTTCGTCCTCCGGCACCTGCAGCCCCGCCA > 2:1327117/1‑150 GCGAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGTCTCGTCCCAGTACGGGTAACCGATCTTGGCCAGCGCTGCCGGCACCAGGTGACGTTCGTCCTCCGGCACCTGCAGCCCCGCCA > 2:1327061/1‑150 GAAAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGTCTCGTCCCAGTACGGGTAACCGATCTTGGCCAGCGCTGCCGGCACCAGGTGACGTTCGTCCTCCGGCACCTGCAGCCCCGCCACC > 1:776312/1‑150 AAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGTCTCGTCCCAGTACGGGTAACCGATCTTGGCCAGCGCTGCCGGCACCAGGTGACGTTCGTCCTCCGGCACCTGCAGCCCCGCCACCAC < 2:419363/150‑1 AAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGTCTCGTCCCAGTACGGGTAACCGATCTTGGCCAGCGCTGCCGGCACCAGGTGACGTTCGTCCTCCGGCACCTGCAGCCCCGCCACCAC < 1:2278469/150‑1 CCCGTACTGGGACGAGACCGAAAACCCGGCCTACAAACTGTTCCTGGGCTGAGCGGCTAAGCTAGGGCTGATGGCCCTTTCGCGGGCTTGCCCGCTCCCACAGGTACTGCGCAGGCCTCAAGGCCTGAGATACCTTGGCAGGAGCGGGTAAGCCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5876685‑5876526‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagcccgcgaaAGGGCCATCAGCCCTAGCTTAGCCGCTCAGCCCAGGAACAGTTTGTAGGCCGGGTTTTCGGTCTCGTCCCAGTACGGGTAACCGATCTTGGCCAGCGCTGCCGGCACCAGGTGACGTTCGTCCTCCGGCACCTGCAGCCCCGCCACCAC > NC_002947/5876608‑5876756 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |