| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5910069 | 167 (0.850) | 10 (0.060) | 8/254 | NT | 5.8% | intergenic (‑125/+32) | spuE/spuD | spermidine/putrescine ABC transporter substrate‑binding protein/spermidine/putrescine ABC transporter substrate‑binding protein |
| ? | NC_002947 | = 5910076 | 169 (0.930) | intergenic (‑132/+25) | spuE/spuD | spermidine/putrescine ABC transporter substrate‑binding protein/spermidine/putrescine ABC transporter substrate‑binding protein | |||||
GCCATCAAGGCCTTGCGGAATACAGAAATAGACAAGTGGGGGTCCTCACAATCAGTGCCTGGGTAGCGACAATGCTGCCGCACACGCAAAACCGGCGCGCAACTTAACTTCGCAGCTTCGATGCCGCAATCATCAATTACCTTTCAATGGCTCTGGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5909910‑5910069‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctctgggccgGGTTTTTCGGCCCAGAGCCATTGAAAGGTAATTGATGATTGCGGCATCGAAGCTGCGAAGTTAAGTTGCGCGCCGGTTTTGCGTGTGCGGCAGCATTGTCGCTACCCAGGCACTGATTGTGAGGACCCCCACTTGTCTATTTCTGTATT < NC_002947/5910076‑5909928 GCCATCAAGGCCTTGCGGAATACAGAAATAGACAAGTGGGGGTCCTCACAATCAGTGCCTGGGTAGCGACAATGCTGCCGCACACGCAAAACCGGCGCGCAACTTAACTTCGCAGCTTCGATGCCGCAATCATCAATTACCTTTCAATGG < 1:1177114/150‑1GCCATCAAGGCCTTGCGGAATACAGAAATAGACAAGTGGGGGTCCTCACAATCAGTGCCTGGGTAGCGACAATGCTGCCGCACACGCAAAACCGGCGCGCAACTTAACTTCGCAGCTTCGATGCCGCAATCATCAATTACCTTTCAATGG > 1:866576/1‑150GCCATCAAGGCCTTGCGGAATACAGAAATAGACAAGTGGGGGTCCTCACAATCAGTGCCTGGGTAGCGACAATGCTGCCGCACACGCAAAACCGGCGCGCAACTTAACTTCGCAGCTTCGATGCCGCAATCATCAATTACCTTTCAATGG > 1:866563/1‑150GCCATCAAGGCCTTGCGGAATACAGAAATAGACAAGTGGGGGTCCTCACAATCAGTGCCTGGGTAGCGACAATGCTGCCGCACACGCAAAACCGGCGCGCAACTTAACTTCGCAGCTTCGATGCCGCAATCATCAATTACCTTTCAATGG > 1:3145749/1‑150 CCATCAAGGCCTTGCGGAATACAGAAATAGACAAGTGGGGGTCCTCACAATCAGTGCCTGGGTAGCGACAATGCTGCCGCACACGCAAAACCGGCGCGCAACTTAACTTCGCAGCTTCGATGCCGCAATCATCAATTACCTTTCAATGGC > 1:1400867/1‑150 CCATCAAGGCCTTGCGGAATACAGAAATAGACAAGTGGGGGTCCTCACAATCAGTGCCTGGGTAGCGACAATGCTGCCGCACACGCAAAACCGGCGCGCAACTTAACTTCGCAGCTTCGATGCCGCAATCATCAATTACCTTTCAATGGC < 1:2928247/150‑1 ATCAAGGCCTTGCGGAATACAGAAATAGACAAGTGGGGGTCCTCACAATCAGTGCCTGGGTAGCGACAATGCTGCCGCACACGCAAAACCGGCGCGCAACTTAACTTCGCAGCTTCGATGCCGCAATCATCAATTACCTTTCAATGGCTC > 1:3091957/1‑150 ATCAAGGCCTTGCGGAATACAGAAATAGACAAGTGGGGGTCCTCACAATCAGTGCCTGGGTAGCGACAATGCTGCCGCACACGCAAAACCGGCGCGCAACTTAACTTCGCAGCTTCGATGCCGCAATCATCAATTACCTTTCAATGGCTC > 1:2774622/1‑150 TCAAGGCCTTGCGGAATACAGAAATAGACAAGTGGGGGTCCTCACAATCAGTGCCTGGGTAGCGACAATGCTGCCGCACACGCAAAACCGGCGCGCAACTTAACTTCGCAGCTTCGATGCCGCAATCATCAATTACCTTTCAATGGCTCT > 2:1912143/1‑150 TCAAGGCCTTGCGGAATACAGAAATAGACAAGTGGGGGTCCTCACAATCAGTGCCTGGGTAGCGACAATGCTGCCGCACACGCAAAACCGGCGCGCAACTTAACTTCGCAGCTTCGATGCCGCAATCATCAATTACCTTTCAATCGCTCT > 2:3966556/1‑150 CAAGGCCTTGCGGAATACAGAAATAGACAAGTGGGGGTCCTCACAATCAGTGCCTGGGTAGCGACAATGCTGCCGCACACGCAAAACCGGCGCGCAACTTAACTTCGCAGCTTCGATGCCGCAATCATCAATTACCTTTCAATGGCTCTG < 2:288495/150‑1 CAAGGCCTTGCGGAATACAGAAATAGACAAGTGGGGGTCCTCACAATCAGTGCCTGGGTAGCGACAATGCTGCCGCACACGCAAAACCGGCGCGCAACTTAACTTCGCAGCTTCGATGCCGCAATCATCAATTACCTTTCAATGGCTCTG < 2:288482/150‑1 CAAGGCCTTGCGGAATACAGAAATAGACAAGTGGGGGTCCTCACAATCAGTGCCTGGGTAGCGACAATGCTGCCGCACACGCAAAACCGGCGCGCAACTTAACTTCGCAGCTTCGATGCCGCAATCATCAATTACCTTTCAATGGCTCTG < 1:2515054/150‑1 CAAGGCCTTGCGGAATACAGAAATAGACAAGTGGGGGTCCTCACAATCAGTGCCTGGGTAGCGACAATGCTGCCGCACACGCAAAACCGGCGCGCAACTTAACTTCGCAGCTTCGATGCCGCAATCATCAATTACCTTTCAATGGCTCTG < 1:3769231/150‑1 cAGGCCTTGCGGAATACAGAAATAGACAAGTGGGGGTCCTCACAATCAGTGCCTGGGTAGCGACAATGCTGCCGCACACGCAAAACCGGCGCGCAACTTAACTTCGCAGCTTCGATGCCGCAATCATCAATTACCTTTCAATGGCTCTGG < 2:3268555/149‑1 AAGGCCTTGCGGAATACAGAAATAGACAAGTGGGGGTCCTCACAATCAGTGCCTGGGTAGCGACAATGCTGCCGCACACGCAAAACCGGCGCGCAACTTAACTTCGCAGCTTCGATGCCGCAATCATCAATTACCTTTCAATGGCTCTGG < 2:3268531/150‑1 AAGGCCTTGCGGAATACAGAAATAGACAAGTGGGGGTCCTCACAATCAGTGCCTGGGTAGCGACAATGCTGCCGCACACGCAAAACCGGCGCGCAACTTAACTTCGCAGCTTCGATGCCGCAATCATCAATTACCTTTCAATGGCTCTGG < 1:372444/150‑1 GGCCTTGCGGAATACAGAAATAGACAAGTGGGGGTCCTCACAATCAGTGCCTGGGTAGCGACAATGCTGCCGCACACGCAAAACCGGCGCGCAACTTAACTTCGCAGCTTCGATGCCGCAATCATCAATTACCTTTCAATGGCTCTGGGC < 1:169846/150‑1 GGCCTTGCGGAATACAGAAATAGACAAGTGGGGGTCCTCACAATCAGTGCCTGGGTAGCGACAATGCTGCCGCACACGCAAAACCGGCGCGCAACTTAACTTCGCAGCTTCGATGCCGCAATCATCAATTACCTTTCAATGGCTCTGGGC < 2:1541587/150‑1 GGCCTTGCGGAATACAGAAATAGACAAGTGGGGGTCCTCACAATCAGTGCCTGGGTAGCGACAATGCTGCCGCACACGCAAAACCGGCGCGCAACTTAACTTAGCAGCTTCGATGCCGCAATCATCAATTACCTTTCAATGGCTCTGGGC < 2:1114172/150‑1 ATAGACAAGTGGGGGTCCTCACAATCAGTGCCTGGGTAGCGACAATGCTGCCGCACACGCAAAACCGGCGCGCAACTTAACTTCGCAGCTTCGATGCCGCAATCATCAATTACCTTTCAATGGCTCTGGGCCGGGTTTTTCGGCCCAGAG < 2:2466954/150‑1 AGACAAGTGGGGGTCCTCACAATCAGTGCCTGGGTAGCGACAATGCTGCCGCACACGCAAAACCGGCGCGCAACTTAACTTCGCAGCTTCGATGCCGCAATCATCAATTACCTTTCAATGGCTCTGGGCCGGGTTTTTCGGCCCAGAGCC < 1:138291/150‑1 AGACAAGTGGGGGTCCTCACAATCAGTGCCTGGGTAGCGACAATGCTGCCGCACACGCAAAACCGGCGCGCAACTTAACTTCGCAGCTTCGATGCCGCAATCATCAATTACCTTTCAATGGCTCTGGGCCGGGTTTTTCGGCCCAGAGCC < 1:1775478/150‑1 ACACGTGGGGGTCCTCACCATCACTGCCTGGGTAGCGACAATGCTGCCGCACACGCAAACCCGGCGCGCAACTCAACTTCGCAGCTGCGATGCCGCAATCAACAATTACCTTTCAATGGCTCTGGGCCGGGTTTTTCGGCCCAGAGCCAT < 2:4256458/150‑1 AAGTGGGGGTCCTCACAATCAGTGCCTGGGTAGCGACAATGCTGCCGCACACGCAAAACCGGCGCGCAACTTAACTTCGCAGCTTCGATGCCGCAATCATCAATTACCATTCAATGGCTCTGGGCCGGGTTTTTCGGCCCAGAGCC > 2:260786/1‑146 AAGTGGGGGTCCTCACAATCAGTGCCTGGGTAGCGACAATGCTGCCGCACACGCAAAACCGGCGCGCAACTTAACTTCGCAGCTTCGATGCCGCAATCATCAATTACCATTCAATGGCTCTGGGCCGGGTTTTTCGGCCCAGAGCC < 1:260786/146‑1 TGCCGCACACGCAAAACCGGCGCGCAACTTAACTTCGCAGCTTCGATGCCGCAATCATCAATTACCTTTCAATGGCTCTGGGCCGGGTTTTTCGGCCCAGAGCCATTGAAAG > 2:4178242/1‑112 TGCCGCACACGCAAAACCGGCGCGCAACTTAACTTCGCAGCTTCGATGCCGCAATCATCAATTACCTTTCAATGGCTCTGGGCCGGGTTTTTCGGCCCAGAGCCATTGAAAG < 1:4178242/112‑1 ATCAATTACCTTTCAATGGCTCTGGGCCGAAAAACCCGGCCCAGAGCCATTGAAAGGTAATTGATGATTGCGGCATCGAAGCTGCGAAGTTAAGTTGCGCGCCGGTTTTGCGTGTGCGGCAGCATTGTCGCTACCCAGGCACTGATTGTG > 1:1848324/1‑150 AATTACCTTTCAATGGCTCTGGGCCGAAAAACCCGGCCCAGAGCCATTGAAAGGTAATTGATGATTGCGGCATCGAAGCTGCGAAGTTAAGTTGCGCGCCGGTTTTGCGTGTGCGGCAGCATTGTCGCTACCCAGGCACTGATTGTGAGG > 2:1245358/1‑150 TCTGGGCCGGGTTTTTCGGCCCAGAGCCATTGAAAGGTAATTGATGATTGCGGCATCGAAGCTGCGAAGTTAAGTTGCGCGCCGGTTTTGCGTGTGCGGCAGCATTGTCGCTACCCAGGCACTGATTGTGAGGACCCCCACTTGTCTATT > 1:2772308/1‑150 TCTGGGCCGGGTTTTTCGGCCCAGAGCCATTGAAAGGTAATTGATGATTGCGGCATCGAAGCTGCGAAGTTAAGTTGCGCGCCGGTTTTGCGTGTGCGGCAGCATTGTCGCTACCCAGGCACTGATTGTGAGGACCCCCACTTGTCTATT > 1:1189104/1‑150 TCTGGGCCGGGTTTTTCGGCCCAGAGCCATTGAAAGGTAATTGATGATTGCGGCATCGAAGCTGCGAAGTTAAGTTGCGCGCCGGTTTTGCGTGTGCGGCAGCATTGTCGCTACCCAGGCACTGATTGTGAGGACCCCCACTTGTCTATT > 1:706473/1‑150 CTGGGCCGGGTTTTTCGGCCCAGAGCCATTGAAAGGTAATTGATGATTGCGGCATCGAAGCTGCGAAGTTAAGTTGCGCGCCGGTTTTGCGTGTGCGGCAGCATTGTCGCTACCCAGGCACTGATTGTGAGGACCCCCACTTGTCTATTT < 1:2253954/150‑1 TGGGCCGGGTTTTTCGGCCCAGAGCCATTGAAAGGTAATTGATGATTGCGGCATCGAAGCTGCGAAGTTAAGTTGCGCGCCGGTTTTGCGTGTGCGGCAGCATTGTCGCTACCCAGGCACTGATTGTGAGGACCCCCACTTGTCTATTTC < 2:3261295/150‑1 GGGCCGGGTTTTTCGGCCCAGAGCCATTGAAAGGTAATTGATGATTGCGGCATCGAAGCTGCGAAGTTAAGTTGCGCGCCGGTTTTGCGTGTGCGGCAGCATTGTCGCTACCCAGGCACTGATTGTGAGGACCCCCACTTGTCTATTTCT < 1:2725945/150‑1 GGGCCGGGTTTTTCGGCCCAGAGCCATTGAAAGGTAATTGATGATTGCGGCATCGAAGCTGCGAAGTTAAGTTGCGCGCCGGTTTTGCGTGTGCGGCAGCATTGTCGCTACCCAGGCACTGATTGTGAGGACCCCCACTTGTCTATTTCT < 1:1118582/150‑1 GGGCCGGGTTTTTCGGCCCAGAGCCATTGAAAGGTAATTGATGATTGCGGCATCGAAGCTGCGAAGTTAAGTTGCGCGCCGGTTTTGCGTGTGCGGCAGCATTGTCGCTACCCAGGCACTGATTGTGAGGACCCCCACTTGTCTATTTCT < 2:1929884/150‑1 GGGCCGGGTTTTTCGGCCCAGAGCCATTGAAAGGTAATTGATGATTGCGGCATCGAAGCTGCGAAGTTAAGTTGCGCGCCGGTTTTGCGTGTGCGGCAGCATTGTCGCTACCCAGGCACTGATTGTGAGGACCCCCACTTGTCTATTTCT < 1:2725976/150‑1 GGGCCGGGTTTTTCGGCCCAGAGCCATTGAAAGGTAATTGATGATTGCGGCATCGAAGCTGCGAAGTTAAGTTGCGCGCCGGTTTTGCGTGTGCGGCAGCATTGTCGCTACCCAGGCACTGATTGTGAGGACCCCCACTTGTCTATTTCT < 1:321217/150‑1 GGCCGGGTTTTTCGGCCCAGAGCCATTGAAAGGTAATTGATGATTGCGGCATCGAAGCTGCGAAGTTAAGTTGCGCGCCGGTTTTGCGTGTGCGGCAGCATTGTCGCTACCCAGGCACTGATTGTGAGGACCCCCACTTGTCTATTTCTG > 1:930274/1‑150 GGCCGGGTTTTTCGGCCCAGAGCCATTGAAAGGTAATTGATGATTGCGGCATCGAAGCTGCGAAGTTAAGTTGCGCGCCGGTTTTGCGTGTGCGGCAGCATTGTCGCTACCCAGGCACTGATTGTGAGGACCCCCACTTGTCTATTTCTG > 1:2759636/1‑150 GCCGGGTTTTTCGGCCCAGAGCCATTGAAAGGTAATTGATGATTGCGGCATCGAAGCTGCGAAGTTAAGTTGCGCGCCGGTTTTGCGTGTGCGGCAGCATTGTCGCTACCCAGGCACTGATTGTGAGGACCCCCACTTGTCTATTTCTGT > 2:3749593/1‑150 CCGGGTTTTTCGGCCCAGAGCCATTGAAAGGTAATTGATGATTGCGGCATCGAAGCTGCGAAGTTAAGTTGCGCGCCGGTTTTGCGTGTGCGGCAGCATTGTCGCTACCCAGGCACTGATTGTGAGGACCCCCACTTGTCTATTTCTGTA > 2:3014589/1‑150 CCGGGTTTTTCGGCCCAGAGCCATTGAAAGGTAATTGATGATTGCGGCATCGAAGCTGCGAAGTTAAGTTGCGCGCCGGTTTTGCGTGTGCGGCAGCATTGTCGCTACCCAGGCACTGATTGTGAGGACCCCCACTTGTCTATTTCTGTA < 2:1335140/150‑1 CCGGGTTTTTCGGCCCAGAGCCATTGAAAGGTAATTGATGATTGCGGCATCGAAGCTGCGAAGTTAAGTTGCGCGCCGGTTTTGCGTGAGCGGCAGCATTGTCGCTACCCAGGCACTGATTGTGAGGACCCCCACTTGTCTATTTCTGTA > 2:4120291/1‑150 CGGGTTTTTCGGCCCAGAGCCATTGAAAGGTAATTGATGATTGCGGCATCGAAGCTGCGAAGTTAAGTTGTGCGCCGGTTTTGCGTGTGCGGCAGCATTGTCGCTACCCAGGCACTGATTGTGAGGACCCCCACTTGTCTATTTCTGTAT > 1:3052176/1‑150 CGGGTTTTTCGGCCCAGAGCCATTGAAAGGTAATTGATGATTGCGGCATCGAAGCTGCGAAGTTAAGTTGCGCGCCGGTTTTGCGTGTGCGGCAGCATTGTCGCTACCCAGGCACTGATTGTGAGGACCCCCACTTGTCTATTTCTGTAT > 2:372331/1‑150 CGGGTTTTTCGGCCCAGAGCCATTGAAAGGTAATTGATGATTGCGGCATCGAAGCTGCGAAGTTAAGTTGCGCGCCGGTTTTGCGTGTGCGGCAGCATTGTCGCTACCCAGGCACTGATTGTGAGGACCCCCACTTGTCTATTTCTGTAT > 1:2233173/1‑150 CGGGTTTTTCGGCCCAGAGCCATTGAAAGGTAATTGATGATTGCGGCATCGAAGCTGCGAAGTTAAGTTGCGCGCCGGTTTTGCGTGTGCGGCAGCATTGTCGCTACCCAGGCACTGATTGTGAGGACCCCCACTTGTCTATTTCTGTAT > 2:795227/1‑150 GGGTTTTTCGGCCCAGAGCCATTGAAAGGTAATTGATGATTGCGGCATCGAAGCTGCGAAGTTAAGTTGCGCGCCGGTTTTGCGTGTGCGGCAGCATTGTCGCTACCCAGGCACTGATTGTGAGGACCCCCACTTGTCTATTTCTGTATT > 2:1480477/1‑150 GGGTTTTTCGGCCCAGAGCCATTGAAAGGTAATTGATGATTGCGGCATCGAAGCTGCGAAGTTAAGTTGCGCGCCGGTTTTGCGTGTGCGGCAGCATTGTCGCTACCCAGGCACTGATTGTGAGGACCCCCACTTGTCTATTTCTGTATT > 2:517093/1‑150 GCCATCAAGGCCTTGCGGAATACAGAAATAGACAAGTGGGGGTCCTCACAATCAGTGCCTGGGTAGCGACAATGCTGCCGCACACGCAAAACCGGCGCGCAACTTAACTTCGCAGCTTCGATGCCGCAATCATCAATTACCTTTCAATGGCTCTGGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5909910‑5910069‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctctgggccgGGTTTTTCGGCCCAGAGCCATTGAAAGGTAATTGATGATTGCGGCATCGAAGCTGCGAAGTTAAGTTGCGCGCCGGTTTTGCGTGTGCGGCAGCATTGTCGCTACCCAGGCACTGATTGTGAGGACCCCCACTTGTCTATTTCTGTATT < NC_002947/5910076‑5909928 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |