| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,258,835 | T→A | 5.3% | intergenic (+17/+28) | PP_5703 → / ← PP_4634 | type III effector protein HopJ/alpha/beta family hydrolase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,258,835 | 0 | T | A | 5.3% | 665.8 / 15.6 | 200 | intergenic (+17/+28) | PP_5703/PP_4634 | type III effector protein HopJ/alpha/beta family hydrolase |
| Reads supporting (aligned to +/- strand): ref base T (91/98); new base A (5/6); total (96/104) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 205 total aligned reads displayed.
GGCCTTCGGCGAGCACTACCGTGATGTGTTGGCCACGCCTGAGGGTAGCGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAG‑TTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCTTCCAGCCTCCCCTGCCGCAACCACTGCAAGGCCACCGGCCACAGGCTTTCGCGAAACCGGTCATGGAAAAACGCGAAATGGCCAATTTCC > NC_002947/5258686‑5258983 | ggCCTTCGGCGAGCACTACCGTGATGTGTTGGCCACGCCTGAGGGTAGCGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAG‑TTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCtt < 2:3344167/150‑1 (MQ=255)ggCCTTCGGCGAGCACTACCGTGATGTGTTGGCCACGCCTGAGGGTAGCGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAG‑TTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCtt > 2:1381968/1‑150 (MQ=255) gCCTTCGGCGAGCACTACCGTGATGTGTTGGCCACGCCTGAGGGTAGCGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAG‑TTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCttt > 1:187829/1‑150 (MQ=255) cctCGGCGAGCACTACCGTGATGTGTTGGCCACGCCTGAGGGTAGCGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAG‑TTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGc > 1:879575/3‑150 (MQ=255) cTTCGGCGAGCACTACCGTGATGTGTTGGCCACGCCTGAGGGTAGCGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAG‑TTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGc < 1:4174300/150‑1 (MQ=255) cTTCGGCGAGCACTACCGTGATGTGTTGGCCACGCCTGAGGGTAGCGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAG‑TTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGc < 2:2007073/150‑1 (MQ=255) ttCGGCGAGCACTACCGTGATGTGTTGGCCACGCCTGAGGGTAGCGACCATGGCAACATCCGTGCACTGATCAAACGCGGTCTGGCGGGCGTGAAG‑TTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCg > 1:3739597/1‑150 (MQ=255) ttCGGCGAGCACTACCGTGATGTGTTGGCCACGCCTGAGGGTAGCGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAG‑TTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCg > 2:2383889/1‑150 (MQ=255) ttCGGCGAGCACTACCGTGATGTGTTGGCCACGCCTGAGGGTAGCGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAG‑TTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCCCTATGCg > 1:4273035/1‑150 (MQ=255) aGCACTACCGTGATGTGTTGGCCACGCCTGAGGGTAGCGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAG‑TTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCAAAGCGGccccgg < 2:1436761/150‑3 (MQ=255) gCACTACCGTGATGTGTTGGCCACGCCTGAGGGTAGCGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAG‑TTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCTGGGGCCGCAAAGCGGccccggc < 2:1994814/150‑4 (MQ=255) gCACTACCGTGATGTGTTGGCCACGCCTGAGGGTAGCGACCATGGAAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAT‑TTTGCTGCGCAGCCGCTTGCGCGAAAGGCTTGAGATTGCTGGGGCCGCAAAGCGGccccggc < 2:1994872/150‑4 (MQ=255) cACTACCGTGATGTGTTGGCCACGCCTGAGGGTAGCGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAG‑TTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTTCGGCCCCACGa > 1:2483593/1‑150 (MQ=255) tACCGTGATGTGTTGGCCACGCCTGAGGGTAGCGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAG‑TTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCGTTTCGGCCCCACGATcc > 1:11354/1‑150 (MQ=255) ccGTGATGTGTTGGCCACGCCTGAGGGTAGCGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAG‑TTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCAccaaacag > 1:4319373/1‑143 (MQ=255) cGTGATGTGTTGGCCACGCCTGAGGGTAGCGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAG‑TTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTgc > 2:1536584/1‑150 (MQ=255) cGTGATGTGTTGGCCACGCCTGAGGGTAGCGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAG‑TTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTgc < 2:4213534/150‑1 (MQ=255) cGTGATGTGTTGGCCACGCCTGAGGGTAGCGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAG‑TTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTgc < 2:3244065/150‑1 (MQ=255) cGTGATGTGTTGGCCACGCCTGAGGGTAGCGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAG‑TTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCAgc > 1:2305318/1‑150 (MQ=255) tGATGTGTTGGCCACGCCTGAGGGTAGCGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAG‑TTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACCAACCAgcgc > 1:3853745/1‑150 (MQ=255) gtgtTGGCCACGCCTGAGGGTAGCGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAG‑TTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCAc < 2:3302634/150‑1 (MQ=255) tgtTGGCCACGCCTGTGGGTAGCGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGATG‑TTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCAcc < 1:3471148/150‑1 (MQ=255) ttGGCCACGCCTGAGGGTAGCGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAG‑TTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCt > 2:3607665/1‑139 (MQ=255) ttGGCCACGCCTGAGGGTAGCGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAG‑TTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCGTTGCGGCCCCACCATCCAGCGCCCAccca > 1:2636808/1‑149 (MQ=255) ccACGCCTGAGGGTAGCGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAG‑TTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCGTTGCGGCCCCACGATCCTGCGCCCACCCGCaaa > 1:3056135/1‑149 (MQ=255) ccACGCCTGAGGGTAGCGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAG‑TTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCAAAGCGGccccggc > 2:1481948/1‑127 (MQ=255) cACGCCTGAGGGTAGCGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAG‑TTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCGTTGCGGCCCCACGGTCCAGCGCCCACCCACAATc > 1:1286636/1‑150 (MQ=255) cACGCCTGAGGGTAGCGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAG‑TTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCGTTGCGGCCCCACGATCAAGCGCccccccgcccac > 1:3107793/1‑144 (MQ=255) tGAGGGTAGCGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAG‑TTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAAACCatgat > 2:1252741/1‑150 (MQ=255) gggTAGCGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAG‑TTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGt < 2:1871071/150‑1 (MQ=255) ggTAGCGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAG‑TTTGCTGCGCAGCCGCTTGCGCGCAAGGCGTGAGATTGCCGGGGCCGCTTTGCGGCCCCACCATCCATCGCCCCCCCGCAAACCATTATGGTg > 2:1649190/1‑150 (MQ=255) gTAGCGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAG‑TTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGc > 1:733083/1‑150 (MQ=255) gTAGCGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAG‑TTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGc > 1:3002168/1‑150 (MQ=255) aGCGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAG‑TTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCa < 2:3701254/150‑1 (MQ=255) gCGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAG‑TTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAg < 2:1905471/150‑1 (MQ=255) cATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAG‑TTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGcccc > 2:3665637/1‑150 (MQ=255) cATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAG‑TTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCGTTGCGGCCCCACGATCCTGCGCCCACCCGCACTCCATGATGGTGCCAGGcccc > 2:108922/1‑150 (MQ=255) aaCATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAG‑TTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCGTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCt > 2:767259/1‑150 (MQ=255) aTCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAG‑TTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCTTcc > 1:3375436/1‑150 (MQ=255) aTCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAG‑TTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCGTTGCGGGCCCACGATACAGCGCCCACCCACAAACCATGATTGTTCCAGGCccccccccggac > 1:919201/1‑146 (MQ=255) tCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGATG‑TTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCTTCCa < 1:519056/150‑1 (MQ=255) tCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAG‑TTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCTTCCa < 1:2721810/150‑1 (MQ=255) tCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAG‑TTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCTTCCa < 1:142797/150‑1 (MQ=255) tCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAG‑TTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCTTCCa < 1:4379884/150‑1 (MQ=255) tCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAG‑TTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCTTCCa < 2:747059/150‑1 (MQ=255) tCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAG‑TTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGATTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCTTCCa < 1:2774823/150‑1 (MQ=255) tCCGTGAACTTATCAAACAGGGTCTGGCGGGGGTGATG‑TTTGCTGCGCAGCCGGTGGCGCGCTTGGGTTGAGTTTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCTTCCa < 1:2267962/150‑1 (MQ=255) cGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAG‑TTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCTTCCAGc < 2:4401310/150‑1 (MQ=255) gCACTGATCAAACACGGTCTGGCGGGCGTGAAG‑TTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCTTCCAGCCTc < 1:2278457/150‑1 (MQ=255) aCTGATCAAACACGGTCTGGCGGGCGTGAAG‑TTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCGTTGCGGCCCCACGATCCTGCGCCCACCCACAATCCAGGATGGTGCCAGGCCCCCCCCCGTCCAGCCTccc > 1:1024840/1‑150 (MQ=255) aTCAAACACGGTCTGGCGGGCGTGAAG‑TTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCTTCCAGCCTCCCCTGc > 2:3012537/1‑150 (MQ=255) tCAAACACGGTCTGGCGGGCGTGAAG‑TTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGGGGCCCCACGATCCAGCGCCCACCCACAAACCATGATGGTGCCAGGCCCCCCCCCATCCAGCCACCCCAGcc > 1:2837974/1‑150 (MQ=255) tCAAACACGGTCTGGCGGGCGTGAAG‑TTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGGTCCTGCGCCCACCCTCAATCCCTGATGGTGCCAGGCCCCCCGCCTTCCCGCCTCCCCTGcc > 2:3822845/1‑150 (MQ=255) tCAAACACGGTCTGGCGGGCGTGAAG‑TTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCTTCCAGCCTCCCCTGcc < 2:4374183/150‑1 (MQ=255) tCAAACACGGTCTGGCGGGCGTGAAG‑TTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCTTCCAGCCTCCCCTGcc < 2:3370059/150‑1 (MQ=255) aaaCACGGGCTGGCGGGCGTGAAG‑TTTGCTGCGCAGCCGCGTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACCATCCTGCGCCCACCCGCAATCCATGATGGTGCCAGGCCCCCCGCCTTCCAGCCTCCCCTGCCGc > 2:3056884/1‑150 (MQ=255) aaCACGGTCTGGCGGGCGTGAAG‑TTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCCCTTTGCGGCCCCAAGAAACAGCGCCCACCCTCAATCCAAGATGGTGCCCGGCCCCCCGCCATCCAGCCACCCCAGCCCCa > 2:567602/1‑150 (MQ=255) cacGGTCTGGCGGGCGTGAAG‑TTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCTTCCAGCCTCCCCTGCCGCAAc < 1:3321529/150‑1 (MQ=255) cGGTCTGGCGGGCGTGAAG‑TTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCGTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCAAGATGGTGCCAGGCCCCCCGCCATCCAGCCTCCCCGGCCGCAACCa > 2:2642694/1‑150 (MQ=255) tCTGGCGGGCGTGAAGTTTTGCTGCGCAGCCACTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCTTCCAGCCTCCCCTGCCGCAACCACt < 2:601672/150‑1 (MQ=255) cTGGCGGGCGTGAAG‑TTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCTTCCAGCCTCCCCTGCCGCAACCACTGc < 2:857333/150‑1 (MQ=255) gcgggcgTGAAG‑TTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGTGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCTTCCAGCCTCCCCTGCCGCAACCACTGCAAg < 1:1621370/150‑1 (MQ=255) gggcgTGAAG‑TTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCTTCCAGCCTCCCCTGCCGCAACCACTGCAAGGc < 1:4024042/150‑1 (MQ=255) cgTGAAG‑TTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCTTCCAGCCTCCCCTGCCGCAACCACTGCAAGGCCAc > 2:2241890/1‑150 (MQ=255) gTGAAG‑TTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGTTTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCTTCCAGCCTCCCCTGCCGCAACCACTGCAAGGCCAcc < 1:2068425/150‑1 (MQ=255) g‑TTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCTTCCAGCCTCCCCTGCCGCAACCACTGCAAGGCCACCGGCca < 2:3383537/150‑1 (MQ=255) tttGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCGTTGCGGCCCCACCATCCTGCGCCCACCCTCAAACCATGATGGTGCCAGGCCCCCCGCCTTCCAGCCTCCCCTGCCGCAACCACTGCAAGGCCACCGGcccc > 1:684138/1‑148 (MQ=255) tgctgcGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCTTCCAGCCTCCCCTGCCGCAACCACTGCAAGGCCACCGGCCACAg < 2:2086361/150‑1 (MQ=255) tgcGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCGTTGCGGCCCCACCAACCAGCGCCCACCCACCAACCAAGATGGTGCCAGGCCCCCCGCCTTCCAGCCGCCCCTGCCGCCACCACAGCAAGGCCCCCCGCCCCAGGcg > 1:3726400/1‑149 (MQ=255) gcgcAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCTTCCAGCCTCCCCTGCCGCAACCACTGCAAGGCCACCGGCCCCAGGCtt > 1:3759452/1‑150 (MQ=255) gcgcAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCCCGTTGCGGCCCCACCAAACAGCCCCCCCCCCCAAACCAAGAAGGTGCCAGGCCCCCCCCCATCCACCCACCCCAGCCGCAACCACAGCAAGGCCACCCGCCCCACGcgt > 1:3190994/1‑148 (MQ=255) cAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCGCAATCCAAGATGGTGCCAGGCCCCCCGCCTTCCCGCCTCCCCGGCCGCAACCACGGCAAGGCCACCGGCCACCGGCTTTcg > 2:942150/1‑150 (MQ=255) aGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCTTCCAGCCTCCCCTGCCGCAACCACTGCAAGGCCACCGGCCACAGGCTTTcgc < 1:3292235/150‑1 (MQ=255) ccGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCGTTGCGGCCCCACCCTACAGCGCCCACCCCCAAACCAAGTTGGTGCCCGGCCCCCCCCCGTCCAGCCGCCCCAGCCCCCACCACAGCAACGCCCCCCGCCCCCGGCGTTCGCGa > 1:2809853/1‑150 (MQ=255) ccGCTTGCGCGCAAGGCGTGAGATTGCCGGGGCCGCGTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCTTCCAGCCTCCCCTGCCGCAACCACTGCAAGGCCACCGGCCACAGGCTTTCGCGa > 2:2596986/1‑150 (MQ=255) cTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCTTCCAGCCTCCCCTGCCGCAACCACTGCAAGGCCACCGGCCACAGGCTTTCGCGAAAc < 2:1267160/150‑1 (MQ=255) ttGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACCATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCTTCCAGCCACCCCAGCCGCAACCACAGCAAGGCCACCGGCCACAGGCTTTCGCGAAAcc > 2:625936/1‑150 (MQ=255) tGCGCGCAAGGCTTGAGATTGCCGGGGCCGCGTTGCGGCCCCACCATCCAGCGCCCCCCCTCAATACAAGATGGTGCCAGGCCCCCCCCCATCCAGCCACCCCAGCCGCCACCACAGCAAGGCCCCCCGCCCCAGGCTTTCGCGCAAccc > 1:3958554/1‑149 (MQ=255) gcAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCTTCCAGCCTCCCCTGCCGCAACCACTGCAAGGCCACCGGCCACAGGCTTTCGCGAAACCGGTCAt > 2:2930924/1‑150 (MQ=255) gcAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCGCAATCCATGATGGTGCCAGGCCCCCCCCCTTACCGCCTCCCCTGCCGCAACCACAGCAAGGCCACCCGCCCCCCGCATTCGCCAAACCGGGCAt > 2:2424690/1‑150 (MQ=255) cAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCTTCCAGCCTCCCCTGCCGCAACCACTGCAAGGCCACCGGCCACAGGCTTTCGCGAAACCGGTCATg < 1:1381968/150‑1 (MQ=255) aaGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCTTCCAGCCTCCCCTGCCGCAACCACTGCAAGGCCACCGGCCACAGGCTTTCGCGAAACCGGTCATgg < 2:314367/150‑1 (MQ=255) tGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCTTCCAGCCTCCCCTGCCGCAACCACTGCAAGGCCACCGGCCACAGGCTTTCGCGAAACCGGTCATGGAAAAAc < 2:3190994/150‑1 (MQ=255) tGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCTTCCAGCCTCCCCTGCCGCAACCACTGCAAGGCCACCGGCCACAGGCTTTCGCGAAACCGGTCATGGAAAAAc < 1:2185156/150‑1 (MQ=255) agaTTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCTTCCAGCCTCCCCTGCCGCAACCACTGCAAGGCCACCGGCCACTGGCTTTCGCGAAACCGGTCATGGAAAAAcgc < 2:3234746/150‑1 (MQ=255) agaTTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCTTCCAGCCTCCCCTGCCGCAACCACTGCAAGGCCACCGGCCACAGGCTTTCGCGAAACCGGTCATGGAAAAAcgc < 2:899770/150‑1 (MQ=255) ttGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCTTCCAGCCTCCCCTGCCGCAACCACTGCAAGGCCACCGGCCACAGGCTTTCGCGAAACCGGTCATGGAAAAACGCGaa < 2:3739597/150‑1 (MQ=255) tGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCTTCCAGCCTCCCCTGCCGCAACCACTGCAAGGCCACCGGCCACAGGCTTTCGCGAAACCGGTCATGGAAAAACGCGaaa < 2:3137482/150‑1 (MQ=255) tggggCCGCAAAGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCTACCAGCCTCCCCTGCCGCAACCACTGCAAGGCCACCGGCCACAGGCTTTCGCGAAACCGGTCATGGAAAAACGCGAAATgg > 1:1119915/2‑150 (MQ=255) cGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCTTCCAGCCTCCCCTGCCGCAACCACTGCAAGGCCACCGGCCACAGGCTTTCGCGAAACCGGTCATGGAAAAACGCGAAATgg < 2:4319373/150‑1 (MQ=255) cGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCTTCCAGCCTCCCCTGCCGCAACCACTGCAAGGCCACCGGCCACAGGCTTTCGCGAAACCGGTCATGGAAAAACGCGAAATgg > 1:475580/1‑150 (MQ=255) cGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCTTCCAGCCTCCCCTGCCGCAACCACTGCAAGGCCACCGGCCACAGGCTTTCGCGAAACCGGTCATGGAAAAACGCGAAATgg < 2:733083/150‑1 (MQ=255) ggggCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCTTCCAGCCTCCCCTGCCGCAACCACTGCAAGGCCACCGGCCACAGGCTTTCGCGAAACCGGTCATGGAAAAACGCGAAATGGc < 1:3523394/150‑1 (MQ=255) gggCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCTTCCAGCCTCCCCTGCCGCAACCACTGCAAGGCCACCGGCCACAGGCTTTCGCGAAACCGGTCATGGAAAAACGCGAAATGGcc < 2:2305318/150‑1 (MQ=255) ggCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCTTCCAGCCTCCCCTGCCGCAACCACTGCAAGGCCACCGGCCACAGGCTTTcgc > 1:2167484/1‑118 (MQ=255) ggCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCTTCCAGCCTCCCCTGCCGCAACCACTGCAAGGCCACCGGCCACAGGCTTTcgc < 2:2167484/118‑1 (MQ=255) gCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCTTCCAGCCTCCCCTGCCGCAACCACTGCAAGGCCACCGGCCACAGGCTTTCGCGAAACCGGTCATGGAAAAACGCGAAATGGCCaa < 2:3805639/150‑1 (MQ=255) cGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCTTCCTGCCTCCCCTGCCGCAACCACTGCAAGGCCACCGGCCACAGGCTTTCGCGAAACCGGTCATGGAAAAACGCGAAATGGCCAAtt > 2:2839439/1‑150 (MQ=255) cGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCTTCCAGCCTCCCCTGCCGCAACCACTGCAAGGCCACCGGCCACAGGCTTTCGCGAAACCGGTCATGGAAAAACGCGAAATGGCCAAtt < 2:3957045/150‑1 (MQ=255) gCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCTTCCAGCCTCCCCTGCCGCAACCACTGCAAGGCCACCGGCCACAGGCTTTCGCGAAACCGGTCATGGAAAAACGCGAAATGGCCAAttt > 1:3653323/1‑150 (MQ=255) | GGCCTTCGGCGAGCACTACCGTGATGTGTTGGCCACGCCTGAGGGTAGCGACCATGGCAACATCCGTGCACTGATCAAACACGGTCTGGCGGGCGTGAAG‑TTTGCTGCGCAGCCGCTTGCGCGCAAGGCTTGAGATTGCCGGGGCCGCTTTGCGGCCCCACGATCCTGCGCCCACCCTCAATCCATGATGGTGCCAGGCCCCCCGCCTTCCAGCCTCCCCTGCCGCAACCACTGCAAGGCCACCGGCCACAGGCTTTCGCGAAACCGGTCATGGAAAAACGCGAAATGGCCAATTTCC > NC_002947/5258686‑5258983 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |