Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 5,483,203 T→G 17.3% L241R (CTA→CGA)  PP_4819 → hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029475,483,2030TG17.3% 501.9 / 10.9 205L241R (CTA→CGA) PP_4819hypothetical protein
Reads supporting (aligned to +/- strand):  ref base T (23/133);  new base G (35/3);  total (69/136)
Fisher's exact test for biased strand distribution p-value = 1.08e-19
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 207 total aligned reads displayed.

ACCTGGACATCGATGGCGAGCCCCCCGTGCACGGTGCGGCCGAACGCGATGACCAGCCCGCATTCAGCGAACCGCTGCGCATCAGCGATGACGAAACCCCGGAAACGGGCCTGAGCGCCCGCGACGACGAGCCACTGGCGCTGCGCCTAACGGCGCATGACGACGAGCCCGTAGAGCCGCTGCCCGGAGAGCGCCTGGAACCAGGCCTTGCCGGCAAATCCGAGCGCCCCTCGCGCAAGGAGCCGCTGGTCGATGTGGTCGACGACCCATTGCAGCTAGGCTGGGAAAAACCCGCAC  >  NC_002947/5483056‑5483352
                                                                                                                                                   |                                                                                                                                                     
aCCTGGACATCGATGGCGAGCCCCCCGTGCACGGTGCGGCCGAACGCGATGACCAGCCCGCATTCAGCGAACCGCTGCGCATCAGCGATGACGAAACCCCGGAAACGGGCCTGAGCGCCCGCGACGACGAGCCACTGGCGCTGCGCCTaa                                                                                                                                                     >  1:2376375/1‑150 (MQ=255)
  cTGGACATCGATGGCGAGCCCCCCGTGCACGGTGCGGCCGAACGCGATGACCAGCCCGCATTCAGCGAACCGCTGCGCATCAGCGATGACGAAACCCCGGAAACGGGCCTGAGCGCCCGCGACGACGAGCCACTGGCGCGGCGCCGAACg                                                                                                                                                   >  1:2133762/1‑150 (MQ=255)
   tGGACATCGATGGCGAGCCCCCCGTGCACGGTGCGGCCGAACGCGATGACCAGCCCGCATTCAGCGAACCGCTGCGCATCAGCGATGACGAAACCCCGGAAACGGGCCTGAGCGCCCGCGACGACGAGCCACTGGCGCTGCGCCTAACgg                                                                                                                                                  <  1:2568448/150‑1 (MQ=255)
    ggACATCGATGGCGAGCCCCCCGTGCACGGTGCGGCCGAACGCGATGACCAGCCCGCATTCAGCGAACCGCTGCGCATCAGCGATGACGAAACCCCGGAAACGGGCCTGAGCGCCCGCGACGACGAGCCACTGGCGCTGCGCCTAACGgc                                                                                                                                                 <  1:3417125/150‑1 (MQ=255)
     gACATCGATGGCGAGCCCCCCGTGCACGGTGCGGCCGAACGCGATGACCAGCCCGCATTCAGCGAACCGCTGCGCATCAGCGATGACGAAACCCCGGAAACGGGCCTGAGCGCCCGCGACGACGAGCCACTGGCGCTGCGCCTAACGgcg                                                                                                                                                <  1:784465/150‑1 (MQ=255)
       cATCGATGGCGAGCCCCCCGTGCACGGTGCGGCCGAACGCGATGACCAGCCCGCATTCAGCGAACCGCTGCGCATCAGCGATGACGAAACCCCGGAAACGGGCCTGAGCGCCCGCGACGACGAGCCACTGGCGCTGCGCCGAACGGCGCa                                                                                                                                              >  2:709888/1‑150 (MQ=255)
        aTCGATGGCGAGCCCCCCGTGCACGGTGCGGCCGAACGCGATGACCAGCCCGCATTCAGCGAACCGCTGCGCATCAGCGATGACGAAACCCCGGAAACGGGCCTGAGCGCCCGCGACGACGAGCCACTGGCGCTTGGGCTAAAGGCGCAt                                                                                                                                             >  2:3440483/1‑150 (MQ=255)
           gATGGCGAGCCCCCCGTGCACGGTGCGGCCGAACGCGATGACCAGCCCGCATTCAGCGAACCGCTGCGCATCAGCGATGACGAAACCCCGGAAACGGGCCTGAGCGCCCGCGACGACGAGCCACTGGCGCTGCGCCTAAAGGCGCATgac                                                                                                                                          >  2:3107716/1‑150 (MQ=255)
             tGGCGAGCCCCCCGTGCACGGTGCGGCCGAACGCGATGACCAGCCCGCATTCAGCGAACCGCTGCGCATCAGCGATGACGAAACCCCGGAAACGGGCCTGAGCGCCCGCGACGACGAGCCACTGGCGCTGCGCCTAACGGCGCATgacga                                                                                                                                        <  1:4247423/150‑1 (MQ=255)
             tGGCGAGCCCCCCGTGCACGGTGCGGCCGAACGCGATGACCAGCCCGCATTCAGCGAACCGCTGCGCATCAGCGATGACGAAACCCCGGAAACGGGCCTGAGCGCCCGCGACGACGAGCCACTGGCGCTGCGCCTAACGGCGCATgacga                                                                                                                                        <  2:3301747/150‑1 (MQ=255)
             tGGCGAGCCCCCCGTGCACGGTGCGGCCGAACGCGATGACCAGCCCGCATTCAGCGAACCGCTGCGCATCAGCGATGACGAAACCCCGGAAACGGGCCTGAGCGCCCGCGACGACGAGCCACTGGCGCTGCGCCGAAAGGCGCAAgacga                                                                                                                                        >  2:1068855/1‑150 (MQ=255)
             tGGCGAGCCCCCCGTGCACGGTGCGGCCGAACGCGATGACCAGCCCGCATTCAGCGAACCGCTGCGCATCAGCGATGACGAAACCCCGGAAACGGGCCTGAGCGCCCGCGACGACGAGCCACTGGCGCGGCGCCGAACCgcgccgggcca                                                                                                                                        >  2:145917/1‑143 (MQ=255)
              ggCGAGCCCCCCGTGCACGGTGCGGCCGAACGCGATGACCAGCCCGCATTCAGCGAACCGCTGCGCATCAGCGATGACGAAACCCCGGAAACGGGCCTGAGCGCCCGCGACGACGAGCCACTGGCGCGGCGCCGAACGGCGCCGgacgac                                                                                                                                       >  2:4272251/1‑150 (MQ=255)
                   gCCCCCCGTGCACGGTGCGGCCGAACGCGATGACCAGCCCGCATTCAGCGAACCGCTGCGCATCAGCGATGACGAAACCCCGGAAACGGGCCTGAGCGCCCGCGACGACGAGCCACTGGCGCTGCGCCTAACGGCGCATGACGACGAGcc                                                                                                                                  <  1:1111502/150‑1 (MQ=255)
                      ccccGTGCACGGTGCGGCCGAACGCGATGACCAGCCCGCATTCAGCGAACCGCTGCGCATCAGCGATGACGAAACCCCGGAAACGGGCCTGAGCGCCCGCGACGACGAGCCACTGGCGCTGCGCCTAACGGCGCATGACGACGAGCCCGt                                                                                                                               >  2:2947001/1‑150 (MQ=255)
                      ccccGTGCACGGTGCGGCCGAACGCGATGACCAGCCCGCATTCAGCGAACCGCTGCGCATCAGCGATGACGAAACCCCGGAAACGGGCCTGAGCGCCCGCGACGACGAGCCACTGGCGCTGCGCCAAAACGCGCAAGACCACCAGcccct                                                                                                                               >  2:3220623/1‑148 (MQ=255)
                       cccGTGCACGGTGCGGCCGAACGCGATGACCAGCCCGCATTCAGCGAACCGCTGCGCATCAGCGATGACGAAACCCCGGAAACGGGCCTGAGCGCCCGCGACGACGAGCCACTGGCGCTGCGCCTAACGGCGCATGACGACGAGCCCGTa                                                                                                                              <  2:198364/150‑1 (MQ=255)
                        ccGTGCACGGTGCGGCCGAACGCGATGACCAGCCCGCATTCAGCGAACCGCTGCGCATCAGCGATGACGAAACCCCGGAAACGGGCCTGAGCGCCCGCGACGACGAGCCACTGGCGCTGCGCCTAACGGCGCATGACGACGAGCCCGTag                                                                                                                             <  2:3958278/150‑1 (MQ=255)
                         cGTGCACGGTGCGGCCGAACGCGATGACCAGCCCGCATTCAGCGAACCGCTGCGCATCAGCGATGACGAAACCCCGGAAACGGGCCTGAGCGCCCGCGACGACGAGCCACTGGCGCTGCGCCTAACGGCGCATGACGACGAGCCCGTaga                                                                                                                            <  2:3808102/150‑1 (MQ=255)
                         cGTGCACGGTGCGGCCGAACGCGATGACCAGCCCGCATTCAGCGAACCGCTGCGCATCAGCGATGACGAAACCCCGGAAACGGGCCTGAGCGCCCGCGACGACGAGCCACTGGCGCTGCGCCTAACGGCGCATGACGACGAGCCCGTaga                                                                                                                            <  1:950536/150‑1 (MQ=255)
                         cGTGCACGGTGCGGCCGAACGCGATGACCAGCCCGCATTCAGCGAACCGCTGCGCATCAGCGATGACGAAACCCCGGAAACGGGCCTGAGCGCCCGCGACGACGAGCCACTGGCGCTGCGCCTAACGGCGCATGACGACGAGCCCGTaga                                                                                                                            <  2:3808113/150‑1 (MQ=255)
                               cGGTGCGGCCGAACGCGATGACCAGCCCGCATTCAGCGAACCGCTGCGCATCAGCGATGACGAAACCCCGGAAACGGGCCTGAGCGCCCGCGACGACGAGCCACTGGCGCTGCGCCGACCGGCGCCTGACGACGCGCCCGGAGGGCCGcg                                                                                                                      >  2:1080682/1‑149 (MQ=255)
                                      gCCGAACGCGATGACCAGCCCGCATTCAGCGAACCGCTGCGCATCAGCGATGACGAAACCCCGGAAACGGGCCTGAGCGCCCGCGACGACGAGCCACTGGCGCTGCGCCTAACGGCGCATGACGACGAGCCTGTAGAGCCGCTGCCCGga                                                                                                               <  1:4063662/150‑1 (MQ=255)
                                      gCCGAACGCGATGACCAGCCCGCATTCAGCGAACCGCTGCGCATCAGCGATGACGAAACCCCGGAAACGGGCCTGAGCGCCCGCGACGACGAGCCACTGGCGCTGCGCCTAACGGCGCATGACGACGAGCCCGTAGAGCCGCTGCCCGga                                                                                                               <  2:1667662/150‑1 (MQ=255)
                                      gCCGAACGCGATGACCAGCCCGCATTCAGCGAACCGCTGCGCATCAGCGATGACGAAACCCCGGAAACGGGCCTGAGCGCCCGCGACGACGAGCCACTGGCGCTGCGCCTAACGGCGCATGACGACGAGCCCGTAGAGCCGCTGCCCGga                                                                                                               <  2:913898/150‑1 (MQ=255)
                                      gCCGAACGCGATGACCAGCCCGCATTCAGCGAACCGCTGCGCATCAGCGATGACGAAACCCCGGAAACGGGCCTGAGCGCCCGCGACGACGAGCCACTGGCGCTGCGCCTAACGGCGCATGACGACGAGCCCGTAGAGCCGCTGCCCGga                                                                                                               <  1:3808379/150‑1 (MQ=255)
                                        cGAACGCGATGACCAGCCCGCATTCAGCGAACCGCTGCGCATCAGCGATGACGAAACCCCGGAAACGGGCCTGAGCGCCCGCGACGACGAGCCCCTGGCGCGGCGCCGAACCGCGCCGGACGACGAGCCCCGAGAGCcccggcccggcgc                                                                                                             >  2:3763273/1‑147 (MQ=255)
                                         gAACGCGATGACCAGCCCGCATTCAGCGAACCGCTGCGCATCAGCGATGATGAAACCCCGGAAACGGGCCTGAGCGCCCGCGACGACGAGCCACTGGCGCGGCGCCGAACGGCGCCAGGCGACGCGCCCGGAGGGCCGCGGCCCCgaggg                                                                                                            >  1:4516526/1‑148 (MQ=255)
                                          aaCGCGATGACCAGCCCGCATTCAGCGAACCGCTGCGCATCAGCGATGACGAAACCCCGGAAACGGGCCTGAGCGCCCGCGACGACGAGCCACTGGCGCTGCGCCTAACGGCGCATGACGACGAGCCCGTAGAGCCGCTGCCCGGAGAgc                                                                                                           <  1:4081891/150‑1 (MQ=255)
                                           aCGCGATGACCAGCCCGCATTCAGCGAACCGCTGCGCATCAGCGATGACGAAACCCCGGAAACGGGCCTGAGCGCCCGCGACGACGAGCCACTGGCGCTGCGCCAAACGGCGCAATACGACGAGCCCGTAGATCCGCTGCCCGGAGAgcg                                                                                                          >  2:1436973/1‑150 (MQ=255)
                                              cgATGACCAGCCCGCATTCAGCTAAGCGCTGCGCATCATCTATGACGAAACCCCTGAAACGGGCCTTAGCGCCCGCGACGACGAGCCACTGGCGCTGCGCCTAACGGCGCATGACGACGAGCCCGTAGAGCCGCTGCCCGGAGAGCGCCt                                                                                                       <  1:1586151/150‑1 (MQ=255)
                                               gATGACCAGCCCGCATTCAGCGAACCGCTGCGCATCAGCGATGACGAAACCCCGGAAACGGGCCTGAGCGCCCGCGACGACGAGCCACTGGCGCTGGGCCGCACGGCGCCGGGCCCCGAGCCCCGAGAGCCCCAGCCCCGCGCGCGcccg                                                                                                      >  1:3098074/1‑148 (MQ=255)
                                               gATGACCAGCCCGCATTCAGCGAACCGCTGCGCATCAGCGATGACGAAACCCCGGAAACGGGCCTGAGCGCCCGCGACGACGAGCCACTGGCGCTGGGCCGAACCGCCCCAGACCGCGAGCCCCGGGAGCCCCGGCCCCGCGCGCGccgg                                                                                                      >  1:2704521/1‑148 (MQ=255)
                                               gATGACCAGCCCGCATTCAGCGAACCGCTGCGCATCAGCGATGACGAAACCCCGGAAACGGGCCTGAGCGCCCGCGACGACGAGCCACTGGCGCTGCGCCGAACCCCCCCAGACCACGAGCCCCGAGAGCCCCAGCCCCCAGAGCGccgg                                                                                                      >  2:3855033/1‑148 (MQ=255)
                                               gATGACCAGCCCGCATTCAGCGAACCGCTGCGCATCAGCGATGACGAAACCCCGGAAACGGGCCTGAGCGCCCGCGACGACGAGCCACTGGCGCGGCGCCGAACGGCGCAGGGCGCCGAGCCCGGAGGGCCGCGGCCCGGGGAGCGccgg                                                                                                      >  2:3541029/1‑148 (MQ=255)
                                                  gcccAGCCCGCAGTCCGCGAACCGCTGCGCATCAGCGATGACGACCCCCCGGAAACGGGCCTGAGCGCCCGCGACGACGAGCCACTGGCGCTGCGCCTAACGGCGCATGACGACGAGCCCGTAGAGCCGCTGCCCGGAGAGCGCCTGGaa                                                                                                   <  2:4479731/148‑1 (MQ=255)
                                                  gACCAGCCCGCATTCAGCGAACCGCTGCGCATCAGCGATGACGAAACCCCGGAAACGGGCCTGAGCGCCCGCGACGACGAGCCACTGGCGCTGCGCCTAACGGCGCATGACGACGAGCCCGTAGAGCCGCTGCCCGGAGAGCGCCTGGaa                                                                                                   <  1:4438745/150‑1 (MQ=255)
                                                    ccAGCCCGCATTCAGCGAACCGCTGCGCATCAGCGATGACGAAACCCCGGAAACGGGCCTGAGCGCCCGCGACGACGAGCCACTGGCGCTGCGCCTAACGGCGCATGACGACGAGCCCGTAGAGCCGCTGCCCGGAGAGCGCCTGGAAcc                                                                                                 <  1:577598/150‑1 (MQ=255)
                                                     cAGCCCGCATTCAGCGAACCGCTGCGCATCAGCGATGACGAAACCCCGGAAACGGGCCTGAGCGCCCGCGACGACGAGCCACTGGCGCTGGGCCGAAAAGCGCCAGACCAACAGCCCCGAGAGCCCCAGCCCCGCGAGCGCCGGGGACCa                                                                                                >  1:4293950/1‑150 (MQ=255)
                                                     cAGCCCGCATTCAGCGAACCGCTGCGCATCAGCGATGACGAAACCCCGGAAACGGGCCTGAGCGCCCGCGACGACGAGCCACTGGCGCTGCGCCTAACGGCGCATGACGACGAGCCCGTAGAGCCGCTGCCCGGAGAGCGCCTGGAACCa                                                                                                <  2:2344266/150‑1 (MQ=255)
                                                     cAGCCCGCATTCAGCGAACCGCTGCGCATCAGCGATGACGAAACCCCGGAAACGGGCCTGAGCGCCCGCGACGACGAGCCACTGGCGCTGCGCCTAACGGCGCATGACGACGAGCCCGTAGAGCCGCTGCCCGGAGAGCGCCTGGAAACa                                                                                                >  2:3725612/1‑150 (MQ=255)
                                                     cAGCCCGCATTCAGCGAACCGCTGCGCATCAGCGATGACGAAACCCCGGAAACGGGCCTGAGCGCCCGCGACGACGAGCCACTGGCGCTGCGCCGAACCGCGCCAGACGACGAGCCCCGAGAGCCCCAGCCCCGCGAGCCCCAGGCAccc                                                                                                >  1:3211790/1‑149 (MQ=255)
                                                       gCCCGCATTCAGCGAACCGCTGCGCATCAGCGATGACGAAACCCCGGAAACGGGCCTGAGCGCCCGCGACGACGAGCCACTGGCGCTGCGCCTAACGGCGCATGACGACGAGCCCGTAGAGCCGCTGCCCGGAGAGCGCCTGGAACCAgg                                                                                              <  1:3267806/150‑1 (MQ=255)
                                                        cccGCATTCAGCGAACCGCTGCGCATCAGCGATGACGAAACCCCGGAAACGGGCCTGAGCGCCCGCGACGACGAGCCACTGGCGCTGGGCCCAACCGCGCCGGAAGCCGAGCCCCGAGAGCCGCGGCCCCGGGAGCGCCCGGGACCCGGc                                                                                             >  1:322651/1‑150 (MQ=255)
                                                        cccGCATTCAGCGAACCGCTGCGCATCAGCGATGACGAAACCCCGGAAACGGGCCTGAGCGCCCGCGACGACGAGCCACTGGCGCTGCGCCTAACGGCGCATGACGACGAGCCCGTAGAGCCGCTGCCCGGAGAGCGCCTGGAACCAGGc                                                                                             <  1:3729685/150‑1 (MQ=255)
                                                         ccGCATTCAGCGAACCGCTGCGCATCAGCGATGACGAAACCCCGGAAACGGGCCTGAGCGCCCGCGACGACGAGCCACTGGCGCTGCGCCTAACGGCGCATGACGACGAGCCCGTAGAGCCGCTGCCCGGAGAGCGCCTGGAACCAGGcc                                                                                            <  1:1491026/150‑1 (MQ=255)
                                                          cGCATTCAGCGAACCGCTGCGCATCAGCGATGACGAAACCCCGGAAACGGGCCTGAGCGCCCGCGACGACGAGCCACTGGCGCTGCGCCTAACGGCGCATGACGACGAGCCCGTAGAGCCGCTGCCCGGAGAGCGCCTGGTTCCAGGcgc                                                                                           <  2:1251606/150‑3 (MQ=255)
                                                          cGCATTCAGCGAACCGCTGCGCATCAGCGATGACGAAACCCCGGAAACGGGCCTGAGCGCCCGCGACGACGAGCCACTGGCGCTGCGCCGAACGGCGCATGAAGCCGAGCCCGTAGAGCCGCGGCCCCGCGAGCGCCGGGAACCAGGccg                                                                                           >  2:3363235/1‑149 (MQ=255)
                                                             aTTCAGCGAACCGCTGCGCATCAGCGATGACGAAACCCCGGAAACGGGCCTGAGCGCCCGCGACGACGAGCCACTGGCGCTGCGCCTAACGGCGCATGACGACGAGCCCGTAGAGCCGCTGCCCGGAGAGCGCCTGGAACCAGGCCTTGc                                                                                        <  2:1908077/150‑1 (MQ=255)
                                                              ttCAGCGAACCGCTGCGCATCAGCGATGACGAAACCCCGGAAACGGGCCTGAGCGCCCGCGACGACGAGCCACTGGCGCGGGGCCGCAAGGCCCCAGCCGACCAGCCCCGCGAGCCGCGGCCCGGGCGGCGCCCGGGACCACGccggggc                                                                                       >  1:3976706/1‑145 (MQ=255)
                                                                 aGCGAACCGCTGCGCATCAGCGATGACGAAACCCCGGAAACGGGCCTGAGCGCCCGCGACGACGAGCCACTGGCGCTGCGCCTAACGGCGCATGACGACGAGCCCGTAGAGCCGCTGCCCGGAGAGCGCCTGGAACCAGGCCTTGCCGGc                                                                                    <  2:2199800/150‑1 (MQ=255)
                                                                 aGCGAACCGCTGCGCATCAGCGATGACGAAACCCCGGAAACGGGCCTGAGCGCCCGCGACGACGAGCCACTGGCGCTGCGCCGAAAGGCGCATGTCGACGAGCCCGGAGAGCCCCGGCCCCGCGAGCGCCCGGGACCACGCCGTGCCGGc                                                                                    >  2:50808/1‑150 (MQ=255)
                                                                  gCGAACCGCTGCGCATCAGCGATGACGAAACCCCGGAAACGGGCCTGAGCGCCCGCGACGACGAGCCACTGGCGCTGCGCCGAACGGCGCCGGACCCCGAGCCCCGAGAGCCCCTGCCCCGAGAGCGCCGGGTAACACGCCGTggcggcc                                                                                   >  2:3148688/1‑149 (MQ=255)
                                                                     aaCCGCTGCGCATCAGCGATGACGAAACCCCGGAAACGGGCCTGAGCGCCCGCGACGACGAGCCACTGGCGCTGCGCCGAACGGCGCATGAAGACGAGCCCGTAGAGCCGCTGCCCGGAGAGCGCCTGGTACCCGGCCGTGCCGGCcaaa                                                                                >  2:1008951/1‑149 (MQ=255)
                                                                     aaCCGCTGCGCATCAGCGATGACGAAACCCCGGAAACGGGCCTGAGCGCCCGCGACGACGAGCCACTGGCGCTGCGCCGAACACCGCCTGACGAACAGCCCCCAGAGACGCATCCCCGAGAGCGCCCGGAAACACGCCGTGCCGGCacaa                                                                                >  2:2256944/1‑147 (MQ=255)
                                                                     aaCCGCTGCGCATCAGCGATGACGAAACCCCGGAAACGGGCCTGAGCGCCCGCGACGACGAGCCACTGGCGCGGCGCCTCACCGCGCCTGACGCCGAGCCCCGAGAGCCGCAGCCCCGCGCGCGCCGGGGACCCGGCCGTGCCGGCcaaa                                                                                >  2:3987037/1‑149 (MQ=255)
                                                                         gCTGCGCATCAGCGATGACGAAACCCCGGAAACGGGCCTGAGCGCCCGCGACGACGAGCCACTGGCGCTGCGCCTAACGGCGCATGACGACGAGCCCGTAGAGCCGCTGCCCGGAGAGCGCCTGGAACCAGGCCTTGCCGGCAAATCCGa                                                                            <  1:2031684/150‑1 (MQ=255)
                                                                         gCTGCGCATCAGCGATGACGAAACCCCGGAAACGGGCCTGAGCGCCCGCGACGACGAGCCACTGGCGCTGCGCCTAACGGCGCATGACGACGAGCCCGTAGAGCCGCTGCCCGGAGAGCGCCTGGAACCAGGCCTTGCCGGCAAATCCGa                                                                            <  2:4453969/150‑1 (MQ=255)
                                                                           tGCGCATCAGCGATGACGAAACACCGGATACTGGCCTGAGCGCCCGCGACGACGAGCCACTGGCGCTGCGCCTAACTGCGCATGACGACGAGCCCGTAGAGCCGCTGCCCGGAGAGCGCCTGGAACCAGGCCTTGCCGGCAAATCCGAgc                                                                          <  2:2437327/150‑1 (MQ=255)
                                                                             cgcATCAGCGATGACGAAACCCCGGAAACGGGCCTGAGCGCCCGCGACGACGAGCCACTGGCGCTGCGCCTAACGGCGCATGACGACGAGCCCGTAGAGCCGCTGCCCGGAGAGCGCCTGGAACCAGGCCTTGCCGGCAAATCCGAgcgc                                                                        <  2:2660828/150‑1 (MQ=255)
                                                                              gcATCAGCGATGACGAAACCCCGGAAACGGGCCTGAGCGCCCGCGACGACGAGCCACTGGCGCTGCGCCTAACGGCGCATGACGACGAGCCCGTAGAGCCGCTGCCCGGAGAGCGCCTGGAACCAGGCCTTGCCGGCAAATCCGAGCGcc                                                                       <  1:72530/150‑1 (MQ=255)
                                                                                 tCAGCGATGACGAAACCCCGGAAACGGGCCTGAGCGCCCGCGACGACGAGCCACTGGCGCTGGGGCCAACCGCGCAAGGCGACGCGGCCCGAGATCCCCGGCCCCGGGGGCGCCGGGGACCAGGCCGTTCCGGCAAAAACCCGCGcccca                                                                    >  2:2010727/1‑149 (MQ=255)
                                                                                    gCGATGACGAAACCCCGGAAACGGGCCTGAGCGCCCGCGACGACGAGCCACTGGCGCTGCGCCTAACGGCGCATGACGACGAGCCCGTAGAGCCGCTGCCCGGAGAGCGCCTGGAACCAGGCCTTGCCGGCAAATCCGAGCGCCCCTcgc                                                                 <  1:1077984/150‑1 (MQ=255)
                                                                                         gACGAAACCCCGGAAACGGGCCTGAGCGCCCGCGACGACGAGCCACTGGCGCTGCGCCTAACGGCGCATGACGACGAGCCCGTAGAGCCGCTGCCCGGAGAGCGCCTGGAACCAGGCCTTGCCGGCAAATCCGAGCGCCCCTCGCGCAAg                                                            <  1:897505/150‑1 (MQ=255)
                                                                                            gAAACCCCGGAAACGGGCCTGAGCGCCCGCGACGACGAGCCACTGGCGCTGCGCCGAACGGCGCCTGACGCCGAGCCCCGAGAGCCCCGGCCCGGCGGGCGCCGGGGACCCCGCCGGGCCGGCCAAAACGAGCGCCCCGCCCCCAAGGAg                                                         >  2:839513/1‑150 (MQ=255)
                                                                                                ccccGGAAACGGGCCTGAGCGCCCGCGACGACGAGCCACTGGCGCTGCGCCTAACGGCGCATGACGACGAGCCCGTAGAGCCGCTGCCCGGAGAGCGCCTGGAACCAGGCCTTGCCGGCAAATCCGAGCGCCCCTCGCGCAAGGAGCCGc                                                     <  1:4275918/150‑1 (MQ=255)
                                                                                                  ccGGAAACGGGCCTGAGCGCCCGCGACGACGAGCCACTGGCGCTGGGCCCAAAGGCGCCGGTCGACCGGCCCCGAGAGCCCCGGCCCCGCGGGCCCCGGGGACCAGGCCGGGCCGGCACAAACCAGCGCCCCCCCCGCCACGAGccccgg                                                   >  2:871552/1‑146 (MQ=255)
                                                                                                        aCGGGCCTGAGCGCCCGCGACGACGAGCCACTGGCGCTGCGCCTAACGGCGCATGACGACGAGCCCGTAGAGCCGCTGCCCGGAGAGCGCCTGGAACCAGGCCTTGCCGGCAAATCCGAGCGCCCCTCGCGCAAGGAGCCGCTGGTCGAt                                             <  1:2298584/150‑1 (MQ=255)
                                                                                                        aCGGGCCTGAGCGCCCGCGACGACGAGCCACTGGCGCTGCGCCTAACGGCGCATGACGACGAGCCCGTAGAGCCGCTGCCCGGAGAGCGCCTGGAACCAGGCCTTGCCGGCAAATCCGAGCGCCCCTCGCGCAAGGAGCCGCTGGTCGAt                                             <  1:145917/150‑1 (MQ=255)
                                                                                                           ggCCTGAGCGCCCGCGACGACGAGCCACTGGCGCTGCGCCTAACGGCGCATGACGACGAGCCCGTAGAGCCGCTGCCCGGAGAGCGCCTGGAACCAGGCCTTGCCGGCAAATCCGAGCGCCCCTCGCGCAAGGAGCCGCTGGTCGAtgtg                                          <  2:51100/150‑1 (MQ=255)
                                                                                                             ccTGAGCGCCCGCGACGACGAGCCACTGGCGCTGCGCCTAACGGCGCATGACGACGAGCCCGTAGAGCCGCTGCCCGGAGAGCGCCTGGAACCAGGCCTTGCCGGCAAATCCGAGCGCCCCTCGCGCAAGGAGCCGCTGGTCGATGTGGt                                        <  1:3089913/150‑1 (MQ=255)
                                                                                                              cTGAGCGCCCGCGACGACGAGCCACTGGCGCTGCGCCTAACGGCGCATGACGACGAGCCCGTAGAGCCGCTGCCCGGAGAGCGCCTGGAACCAGGCCTTGCCGGCAAATCCGAGCGCCCCTCGCGCAAGGAGCCGCTGGTCGATGTGGTc                                       <  1:4413743/150‑1 (MQ=255)
                                                                                                              cTGAGCGCCCGCGACGACGAGCCACTGGCGCTGCGCCTAACGGCGCATGACGACGAGCCCGTAGAGCCGCTGCCCGGAGAGCGCCTGGAACCAGGCCTTGCCGGCAAATCCGAGCGCCCCTCGCGCAAGGAGCCGCTGGTCGATGTGGTc                                       <  2:2600567/150‑1 (MQ=255)
                                                                                                                 aGCGCCCGCGACGACGAGCCACTGGCGCTGCGCCTAACGGCGCATGACGACGAGCCCGTAGAGCCGCTGCCCGGAGAGCGCCTGGAACCAGGCCTTGCCGGCAAATCCGAGCGCCCCTCGCGCAAGGAGCCGCTGGTCGATGTGGTcgac                                    <  1:1783506/150‑1 (MQ=255)
                                                                                                                    gcCCGCGACGACGAGCCACTGGCGCTGCGCCTAACGGCGCATGACGACGAGCCCGTAGAGCCGCTGCCCGGAGAGCGCCTGGAACCAGGCCTTGCCGGCAAATCCGAGCGCCCCTCGCGCAAGGAGCCGCTGGTCGATGTGGTCgacgac                                 <  2:4294527/150‑1 (MQ=255)
                                                                                                                     cccGCGACGACGAGCCACTGGCGCTGCGCCTAACGGCGCATGACGACGAGCCCGTAGAGCCGCTGCCCGGAGAGCGCCTGGAACCAGGCCTTGCCGGCAAATCCGAGCGCCCCTCGCGCAAGGAGCCGCTGGTCGATGTGGTCGACGAcc                                <  1:2102117/150‑1 (MQ=255)
                                                                                                                      ccGCGACGACGAGCCACTGGCGCTGCGCCGAACCGCGCATGGCGACGCGCCCGGAGAGCCCCTGCCCCGAGAGCGCCGGGAACCCGGCCGTGCCGGCCAAAACCAGCGCCCCACGCGCAAGGAGCCGCAGGGCGCTGTGGTCGACGAccc                               >  2:3642265/1‑150 (MQ=255)
                                                                                                                      ccGCGACGACGAGCCACTGGCGCTGCGCCGAAAGGCGCATGACGACGAGCCCGGAGAGCCGCTGCCCCGAGAGCGCCGGGAAACACGCCGTGCCGGCCAAAACCCGCGCCCCCCGCGCCACGAGCCGCAGGTGGATGTGGTCGAACAccc                               >  2:2735619/1‑150 (MQ=255)
                                                                                                                            cgacgaGCCACTGGCGCTGCGCCTAACGGCGCATGACGTCGAGCCCGTAGATCCGCTGCCCGGAGAGCGCCTGGAACCAGGCCTTGCCGGCAAATCCGAGCGCCCCTCGCGCAAGGAGCCGCTGGTCGATGTGGTCGACGACCCATTGCa                         <  1:740383/150‑1 (MQ=255)
                                                                                                                            cgacgaGCCACTGGCGCTGCGCCTAACGGCGCATGACGACGAGCCCGTAGAGCCGCTGCCCGGAGAGCGCCTGGAACCAGGCCTTGCCGGCAAATCCGAGCGCCCCTCGCGCAAGGAGCCGCTGGTCGATGTGGTCGACGACCCATTGCa                         <  2:1334684/150‑1 (MQ=255)
                                                                                                                                     aCTGGCGCTGCGCCTACCGGCGCATGACGACGAGCCCGTAGAGCCGCTGCCCGGAGAGCGCCTGGAACCAGGCCTTGCCGGCAAATCCGAGCGCCCCTCGCGCAAGGAGCCGCTGGTCGATGTGGTCGACGACCCATTGCAGCTAGGCTg                <  2:358483/150‑1 (MQ=255)
                                                                                                                                     aCTGGCGCTGCGCCTAACGGCGCATGACGACGAGCCCGTAGAGCCGCTGCCCGGAGAGCGCCTGGAACCAGGCCTTGCCGGCAAATCCGAGCGCCCCTCGCGCAAGGAGCCGCTGGTCGATGTGGTCGACGACCCATTGCAGCTAGGCTg                <  2:4070777/150‑1 (MQ=255)
                                                                                                                                     aCTGGCGCTGCGCCTAACGGCGCATGACGACGAGCCCGTAGAGCCGCTGCCCGGAGAGCGCCTGGAACCAGGCCTTGCCGGCAAATCCGAGCGCCCCTCGCGCAAGGAGCCACTGGTCGATGTGGTCGACGACCCATTGCAGCTAGGCTg                <  2:470080/150‑1 (MQ=255)
                                                                                                                                     aCTGGCGCTGCGCCGAACGGCGCATGACGACGAGCCCGTAGAGCCGCTGCCCGGAGAGCGCCTGGAACCAGGCCTTGCCGGCAAATCCGAGCGCCCCTCGCGCAAGGAGCCGCTGGTCGATGTGGTCGACGACCCATTGCAGCTAGGCTg                <  2:1215304/150‑1 (MQ=255)
                                                                                                                                      cTGGCGCTGCGCCTAACGGCGCATGACGACGAGCCCGTAGAGCCGCTGCCCGGAGAGCGCCTGGAACCAGGCCTTGCCGGCAAATCCGAGCGCCCCTCGCGCAAGGAGCCGCTGGTCGATGTGGTCGACGACCCATTGCAGCTAGGCTgg               <  2:593125/150‑1 (MQ=255)
                                                                                                                                      cTGGCGCTGCGCCTAACGGCGCATGACGACGAGCCCGTAGAGCCGCTGCCCGGAGAGCGCCTGGAACCAGGCCTTGCCGGCAAATCCGAGCGCCCCTCGCGCAAGGAGCCGCTGGTCGATGTGGTCGACGACCCATTGCAGCTAGGCTgg               <  2:1853381/150‑1 (MQ=255)
                                                                                                                                       tGGCGCTGCGCCTAACGGCGCATGACGACGAGCCCGTAGAGCCGCTGCCCGGAGAGCGCCTGGAACCAGGCCTTGCCGGCAAATCCGAGCGCCCCTCGCGCAAGGAGCCGCTGGTCGATGTGGTCGACGACCCATTGCAGCTAGGCTggg              <  2:1328210/150‑1 (MQ=255)
                                                                                                                                            cTGCGCCTCACGGCGCATGACGACGAGCCCGTAGAGCCGCTGCCCGGAGAGCGCCTGGAACCAGGCCTTGCCGGCAAATCCGAGCGCCCCTCGCGCAAGGAGCCGCTGGTCGATGTGGTCGACGACCCATTGCAGCTAGGCTGGGaaaaa         <  2:2863973/150‑1 (MQ=255)
                                                                                                                                            cTGCGCCTAACGGCGCATGACGACGAGCCCGTAGAGCCGCTGCCCGGAGAGCGCCTGGAACCAGGCCTTGCCGGCAAATCCGAGCGCCCCTCGCGCAAGGAGCCGCTGGTCGATGTGGTCGACGACCCATTGCAGCTAGGCTGGGaaaaa         <  1:2120084/150‑1 (MQ=255)
                                                                                                                                            cTGCGCCTAACGGCGCATGACGACGAGCCCGTAGAGCCGCTGCCCGGAGAGCGCCTGGAACCAGGCCTTGCCGGCAAATCCGAGCGCCCCTCGCGCAAGGAGCCGCTGGTCGATGTGGTCGACGACCCATTGCAGCTAGGCTGGGaaaaa         <  1:480395/150‑1 (MQ=255)
                                                                                                                                             tGCGCCTAACGGCGCATGACGACGAGCCCGTAGAGCCGCTGCCCGGAGAGCGCCTGGAACCAGGCCTTGCCGGCAAATCCGAGCGCCCCTCGCGCAAGGAGCCGCTGGTCGATGTGGTCGACGACCCATTGCAGCTAGGCTGGGAAAAAc        >  1:1767950/1‑150 (MQ=255)
                                                                                                                                              gcgcCTAACGGCGCATGACGACGAGCCCGTAGAGCCGCTGCCCGGAGAGCGCCTGGAACCAGGCCTTGCCGGCAAATCCGAGCGCCCCTCGCGCAAGGAGCCGCTGGTCGATGTGGTCGACGACCCATTGCAGCTAGGCTGGGAAAAAcc       <  1:615650/150‑1 (MQ=255)
                                                                                                                                               cgcCTAACGGCGCATGACGACGAGCCCGTAGAGCCGCTGCCCGGAGAGCGCCTGGAACCAGGCCTTGCCGGCAAATCCGAGCGCCCCTCGCGCAAGGAGCCGCTGGTCGATGTGGTCGACGACCCATTGCAGCTAGGCTGGGAAAAAccc      <  2:587117/150‑1 (MQ=255)
                                                                                                                                                gcCTTACGGCGCATGAAGTCGAGGCCGTATCGCCGCGGGCCGGAGAGCGCCTGGTACCAGGCCTTGCCGGCAAATCCGAGCGCCCCTCGCGCAAGGAGCCGCTGGTCGCTGTTGTCGACGACCCATTGCAGCTAGGCTGGGAAAAACCCg     <  2:2133762/150‑1 (MQ=255)
                                                                                                                                                gcCTAACGGCGCATGACGACGAGCCCGTAGAGCCGCTGCCCGGAGAGCGCCTGGAACCAGGCCTTGCCGGCAAATCCGAGCGCCCCTCGCGCAAGGAGCCGCTGGTCGATGTGGTCGACGACCCATTGCAGCTAGGCTGGGAAAAACCCg     >  2:3908303/1‑150 (MQ=255)
                                                                                                                                                 ccTAACGGCGCATGACGACGAGCCCGTAGAGCCGCTGCCCGGAGAGCGCCTGGAACCAGGCCTTGCCGGCAAATCCGAGCGCCCCTCGCGCAAGGAGCCGCTGGTCGATGTGGTCGACGACCCATTGCAGCTAGGCTGGGAAAAACCCGc    >  2:411912/1‑150 (MQ=255)
                                                                                                                                                 ccTAACGGCGCATGACGACGAGCCCGTAGAGCCGCTGCCCGGAGAGCGCCTGGAACCAGGCCTTGCCGGCAAATCCGAGCGCCCCTCGCGCAAGGAGCCGCTGGTCGATGTGGTCGACGACCCATTGCAGCTAGGCTGGGAAAAACCCGc    <  2:1525371/150‑1 (MQ=255)
                                                                                                                                                  cTAACGGCGCATGACGACGAGCCCGTAGAGCCGCTGCCCGGAGAGCGCCTGGAACCAGGCCTTGCCGGCAAATCCGAGCGCCCCTCGCGCAAGGAGCCGCTGGTCGATGTGGTCGACGACCCATTGCAGCTAGGCTGGGAAAAACCCGCa   <  1:3490563/150‑1 (MQ=255)
                                                                                                                                                  cTAACGGCGCATGACGACGAGCCCGTAGAGCCGCTGCCCGGAGAGCGCCTGGAACCAGGCCTTGCCGGCAAATCCGAGCGCCCCTCGCGCAAGGAGCCGCTGGTCGATGTGGTCGACGACCCATTGCAGCTAGGCTGGGAAAAACCCGCa   <  1:3107716/150‑1 (MQ=255)
                                                                                                                                                   tAACGGCGCATGACGACGAGCCCGTAGAGCCGCTGCCCGGAGAGCGCCTGGAACCAGGCCTTGCCGGCAAATCCGAGCGCCCCTCGCGCAAGGAGCCGCTGGTCGATGTGGTCGACGACCCATTGCAGCTAGGCTGGGAAAAACCCGCAc  <  1:390783/150‑1 (MQ=255)
                                                                                                                                                   |                                                                                                                                                     
ACCTGGACATCGATGGCGAGCCCCCCGTGCACGGTGCGGCCGAACGCGATGACCAGCCCGCATTCAGCGAACCGCTGCGCATCAGCGATGACGAAACCCCGGAAACGGGCCTGAGCGCCCGCGACGACGAGCCACTGGCGCTGCGCCTAACGGCGCATGACGACGAGCCCGTAGAGCCGCTGCCCGGAGAGCGCCTGGAACCAGGCCTTGCCGGCAAATCCGAGCGCCCCTCGCGCAAGGAGCCGCTGGTCGATGTGGTCGACGACCCATTGCAGCTAGGCTGGGAAAAACCCGCAC  >  NC_002947/5483056‑5483352

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑