Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 5,539,031 A→T 13.0% intergenic (+38/+65) nadE → / ← PP_4870 NH(3)‑dependent NAD(+) synthetase/azurin

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029475,539,0310AT13.0% 293.4 / 25.3 130intergenic (+38/+65)nadE/PP_4870NH(3)‑dependent NAD(+) synthetase/azurin
Reads supporting (aligned to +/- strand):  ref base A (55/47);  new base T (2/12);  total (62/68)
Fisher's exact test for biased strand distribution p-value = 8.38e-03
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.93e-01

Only 100 of 134 total aligned reads displayed.

GCAGATCGATGCCTTCCTGCATGGGCAGCCGGTTGACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCGGCTTCCAG  >  NC_002947/5538882‑5539179
                                                                                                                                                     |                                                                                                                                                    
gcAGATCGATGCCTTCCTGCATGGGCAGCCGGTTGACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCCCAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGa                                                                                                                                                      <  2:799172/150‑1 (MQ=255)
gcAGATCGATGCCTTCCTGCATGGGCAGCCGGTTGACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGa                                                                                                                                                      <  1:2953803/150‑1 (MQ=255)
gcAGATCGATGCCTTCCTGCATGGGCAGCCGGTTGACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTAACCCGCGCAAACGa                                                                                                                                                      >  1:659261/1‑150 (MQ=255)
 cAGATCGATGCCTTCCTGCATGGGCAGCCGGTTGACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAg                                                                                                                                                     <  2:2005894/150‑1 (MQ=255)
 cAGATCGATGCCTTCCTGCATGGGCAGCCGGTTGACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAg                                                                                                                                                     <  1:2486790/150‑1 (MQ=255)
  aGATCGATGCCTTCCTGCATGGGCAGCCGGTTGACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGTGGGTTCACCCTCGTATTCGCgg                                                                                                                                                    <  1:2793312/150‑1 (MQ=255)
    aTCGATGCCTTCCTGCATGGGCAGCCGGTTGACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCTCGTATTCGCGGGt                                                                                                                                                  <  1:1316438/150‑1 (MQ=255)
    aTCGATGCCTTCCTGCATGGGCAGCCGGTTGACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGt                                                                                                                                                  <  1:1760894/150‑1 (MQ=255)
     tCGATGCCTTCCTGCATGGGCAGCCGGTTGACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTg                                                                                                                                                 <  1:3930935/150‑1 (MQ=255)
       gATGCCTTCCTGCATGGGCAGCCGGTTGACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGaa                                                                                                                                               <  2:3529236/150‑1 (MQ=255)
        aTGCCTTCCTGCATGGGCAGCCGGTTGACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAAc                                                                                                                                              <  2:1826268/150‑1 (MQ=255)
        aTGCCTTCCTGCATGGGCAGCCGGTTGACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGGTGACCCCCCCAAAAGAGGGTGAAc                                                                                                                                              >  1:849243/1‑150 (MQ=255)
            cTTCCTGCATGGGCAGCCGGTTGACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCTCGTATTCGCGGGTGAAcccgc                                                                                                                                          <  1:3563204/150‑3 (MQ=255)
                 tGCATGGGCAGCCGGTTGACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACg                                                                                                                                     <  2:1727956/150‑1 (MQ=255)
                      gggCAGCCGGTTGACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTc                                                                                                                                <  2:1091492/150‑1 (MQ=255)
                        gCAGCCGGTTGACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTcgc                                                                                                                              <  2:3927826/150‑1 (MQ=255)
                         cAGCCGGTTGACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTcgcg                                                                                                                             <  1:227317/150‑1 (MQ=255)
                         cAGCCGGTTGACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGGTCACCCCCCAAAACGGGGGTGAACCCACCCACGCATTcgcg                                                                                                                             >  2:56606/1‑150 (MQ=255)
                          aGCCGTTTGACCAGGCAGCGTTCGACATCATCTTCGCCACATACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCATTGATAAGTGGCCTGCTGGTGCGGGTTCACCCGCTAATACGAGGGTGAACCCACCGACGAATTCGCgg                                                                                                                            <  2:3092667/150‑1 (MQ=255)
                          aGCCGGTTGACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCTAATACGAGGGTTAACCCACCGACGCATTCGCgg                                                                                                                            <  1:2158014/150‑1 (MQ=255)
                          aGCCGGTTGACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATGCGTCGGTGGGTTCACCCTCGTATTCGCgg                                                                                                                            <  2:3785425/150‑1 (MQ=25)
                          aGCCGGTTGACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATGCGTCGGTGGGTTCACCCTCGTATTCGCgg                                                                                                                            <  2:1582493/150‑1 (MQ=25)
                          aGCCGGTTGACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATGCGTCGGTGGGTTCACCCTCGTATTCGCgg                                                                                                                            <  1:1279921/150‑1 (MQ=25)
                          aGCCGGTTGACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCgg                                                                                                                            <  1:1510435/150‑1 (MQ=255)
                          aGCCGGTTGACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCgg                                                                                                                            <  2:3614268/150‑1 (MQ=255)
                          aGCCGGTTGACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCgg                                                                                                                            <  1:1734752/150‑1 (MQ=255)
                          aGCCGGTTGACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCgg                                                                                                                            <  2:297892/150‑1 (MQ=255)
                          aGCCGGTTGACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCgg                                                                                                                            <  2:4514449/150‑1 (MQ=255)
                          aGCCGGTTGACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCgg                                                                                                                            <  1:40699/150‑1 (MQ=255)
                          aGCCGGTTGACCAGGCAGCGTTCGACATCAGCGTCGCCACCTACCGCACGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCgg                                                                                                                            <  1:12126/150‑1 (MQ=255)
                          aGCCGGTGGACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCgg                                                                                                                            <  1:2686401/150‑1 (MQ=255)
                           gCCGGTTGACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCggg                                                                                                                           <  1:358601/150‑1 (MQ=255)
                           gCCGGTTGACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGGTCACCCGCGCATACGAGGGTGGACCCACCCACGCAGTCGCggg                                                                                                                           >  2:503279/1‑150 (MQ=255)
                            ccGGTTGACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGt                                                                                                                          <  1:4080964/150‑1 (MQ=255)
                             cGGTTGACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATGCGTCGGTGGGTTCACCCTCGTATTCGCGGGTg                                                                                                                         <  2:3412655/150‑1 (MQ=25)
                               gTTGACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTCCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATGCGTCGGTGGGTTCACCCTCGTATTCGCGGGTGaa                                                                                                                       <  2:3633326/150‑1 (MQ=21)
                                 tGACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAAcc                                                                                                                     <  2:1267916/150‑1 (MQ=255)
                                  gACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGGACCCACCGACGCCTTCGCGGGTGAAccc                                                                                                                    >  2:3702984/1‑150 (MQ=255)
                                                  aCATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGGTCACCCGCCAAAAAGAGGGTGAACCCACCCACCCATTAGCGGGTGTAACCCCTCCGGCCGGGGTCg                                                                                                    >  1:336290/1‑150 (MQ=255)
                                                        tcgtcgCCACCTACCGCACGACCCAGCACACGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCa                                                                                              <  2:2920277/150‑1 (MQ=255)
                                                        gcgtcgCCACCCCCCCCACCCCCCCGCACCCGCGCTCACTGCCGTGCGCTCCTTTATACGTGGCCTGCAGGCGGGGGTTCACCGGCTAATACGCGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCa                                                                                              <  2:1330244/149‑1 (MQ=19)
                                                          gtcgCCACCTCCCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGc                                                                                            <  2:4485659/150‑1 (MQ=255)
                                                              cccccgcccGCCAGCCCCAGCCCCCGCGCGACCTGCGGGGCGCTCCTGGCTCTGGGGCCGGCCGGTGGGGGGTCCCCCGCGAATACGGGGGGGAACCCACCGCCGCCGGCGCGGGGGCCCCCGCTCCTGCAGGGTTCGCCGTCAGCCttt                                                                                        <  2:1277259/143‑1 (MQ=255)
                                                              ccACCTCCCGCAACACCCAGCACACGCGCGAACTGCCGTGCGAGCCTGGATAAGGGGCCTGCTGGAGCGGGTGCCCCCGCGAATACGAGGGGGAACCCACCGACGCCTTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCttt                                                                                        <  2:3999838/150‑1 (MQ=255)
                                                              ccACCTCCCGCAACACCCAGCACAAGCGCGAACTGCGGTTCGCTCCTTGATACGTGGCCTGCAGGAGGGGGTTCACCCGCTAATACGTGGTTTAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCttt                                                                                        <  2:1673142/150‑1 (MQ=38)
                                                              ccACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGGGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCttt                                                                                        <  2:3014466/150‑1 (MQ=255)
                                                                       gCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCCCGAATACGAGGGTGAAACCACCCACCCCGTCGCGGGTGAACCCGCGCCAGCCGGGTTCGCCGTCAGCCGATGGTTACttt                                                                               >  1:3744742/1‑149 (MQ=255)
                                                                          acaCCCCGCACCAGCGCTAAGTGCCGTTCGCTCATTGATAAGTGGCCTGCTGGTGGGGGTTCCCCCGCTAATCGGAGGGTTAACCCACCGCCGCATTCGGGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACg                                                                            <  2:1273665/148‑1 (MQ=255)
                                                                              ccAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGGTCACCCGCGAATACGCGGGTGAACCCACCGCCCCAGTCGCGGGGGGACCCGCGCCGGCAGGGGTCGCCGGCCGCCGTTGATTACGTGACGCTGa                                                                        >  2:2142978/1‑150 (MQ=255)
                                                                              ccAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGGTCACCCCCGCCAAAGAGGGTGTAAACACCCCCCCCATCGCGGGTGGAACCCCACCCGCACGGGTCGCCGGCAGCCGGTTTTTACTTGACGAttt                                                                        >  1:3270911/1‑148 (MQ=255)
                                                                                 gCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGCATACGCGGGTGAACCCACCGACCCAATCGCGGGGGAACCCGCGCCTGCCGGGTGCGGCGTCAGCCTGTGGTTAGTTGTCGATGTCCt                                                                     >  2:3280101/1‑150 (MQ=255)
                                                                                 gCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCGCCTGCAGGGTTCGCCGTCAGCCATTGAATACTTGACGATGACCt                                                                     >  2:2946685/1‑150 (MQ=255)
                                                                                  cacaCGCGCGAACTGCCGTTCGCTCCTTGATACGTGGCCTGCAGGTGGGGGTTCACCGGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGTTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCtt                                                                    <  2:2354230/150‑1 (MQ=255)
                                                                                   acaAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTg                                                                   <  2:1388197/150‑1 (MQ=255)
                                                                                       gcgcGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCCCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCATTGATTACTTGACGATGACCTTGccat                                                               >  2:2972017/1‑148 (MQ=255)
                                                                                       gcgcGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGGTCACCCCCGCAAACGAGGGTGAACCCACCCACGCAGTCGCGGGTGAACCCCCTCCAGGCGGGGTCGCCCTCCGCCGTTGATTACTTGTCGATTACCATGccgt                                                               >  2:2779348/1‑148 (MQ=255)
                                                                                          ccaccTGCCTTTCGCTCCTTGATAAGGGGCCTGCTGGTGCGGTTTCACCCGCTAATACGAGGGTCAACCCACCGACGCATTCGGGGGTTACCCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTtca                                                            <  2:195318/146‑1 (MQ=255)
                                                                                             aCTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCTAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTtcatca                                                         <  2:2227813/150‑1 (MQ=255)
                                                                                               tGCCGTTCGCTCCTTGATAAGGGGCCTGCAGGAGCGGGTTCACCCGCTAATACGAGGGTGAACCCACCGACGCATTCGGGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCatcatc                                                       <  2:2821198/150‑1 (MQ=255)
                                                                                                          ccTTGATAAGTGGCCTGCAGGAGCGGGTTAAACCCCGAAAACGAGGGTGTAACCACCCACCCAATCGCGGGTGAAACCGCTCCTGCAGGGTTAGCCGTCAGCCGTTGTTTACATGGCCATGACCATGCCGTTGATAATCCAGAAGTgggc                                            >  2:2426282/1‑148 (MQ=255)
                                                                                                           cTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAAACCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTAGCCGTCATCCTTTGATTAATTGACGATGACCTTTCCTTTCATAATCGAGATGTGGccc                                           >  2:4435138/1‑150 (MQ=37)
                                                                                                                  cggggccggccGGCGGGGGTCCCCCGGCGAATCGGCGGGTCACCCCACCGCCGCTTTCGGGGGTCACCCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAgg                                    <  1:2817215/147‑1 (MQ=255)
                                                                                                                       ccTGCTGGAGCGGGTTCCCCCGCTAATACGAGGGTGAACCCACCGACGCTTTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCag                               <  2:1419949/150‑1 (MQ=255)
                                                                                                                           cAGGAGCGGGTTCAACCCCCAATAAGAGGGTGAAACCACCCACGCAATAGCGGGTGAAACCCCTCCATCAGGGTTAGCCGTCAGCCTTTTTTTAATTTAAGATGACCATTCCTTTCAAAATAGAGATGTGGCCCGGGAAGGTGCagaaga                           >  2:3706705/1‑150 (MQ=255)
                                                                                                                             ggAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGaagaag                         <  2:1427771/150‑1 (MQ=255)
                                                                                                                               aGCGGGTTCACCCGCTAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCt                       <  2:720703/150‑1 (MQ=255)
                                                                                                                                gggggTTCACCCGCCAATACGAGGGTGAACCCACCCACGCAGTCGCGGGTCACCCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTg                      <  1:3612460/148‑1 (MQ=255)
                                                                                                                                  gggTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTa                    <  2:3866162/150‑1 (MQ=255)
                                                                                                                                   ggTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAg                   >  1:1151293/1‑150 (MQ=255)
                                                                                                                                   ggTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAg                   >  1:1151172/1‑150 (MQ=255)
                                                                                                                                    gTTCACCCGCGAATGCGTCGGTGGGTTCACCCTCGTATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGt                  >  2:4428833/1‑150 (MQ=25)
                                                                                                                                    gTTCACCCGCGAATACGAGGTTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGt                  <  1:2946685/150‑1 (MQ=255)
                                                                                                                                    gTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGt                  >  1:2391042/1‑150 (MQ=255)
                                                                                                                                     ttCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTc                 >  2:2504402/1‑150 (MQ=255)
                                                                                                                                     ttCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTc                 >  1:2997452/1‑150 (MQ=255)
                                                                                                                                     ttCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTc                 >  2:2504573/1‑150 (MQ=255)
                                                                                                                                      tCACCCTCGTATTCGCGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTca                >  2:4132979/1‑150 (MQ=255)
                                                                                                                                       cACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTcac               >  2:1246987/1‑150 (MQ=255)
                                                                                                                                        aCCCGCGAATGCGTCGGTGGGTTCACCCTCGTATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTcacc              >  1:1104592/1‑150 (MQ=25)
                                                                                                                                        aCCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTcacc              >  2:499549/1‑150 (MQ=255)
                                                                                                                                        aCCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTcacc              >  1:2535416/1‑150 (MQ=255)
                                                                                                                                          ccGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGACCCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTcaccac            >  2:1943973/1‑150 (MQ=255)
                                                                                                                                          ccGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTTCTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGGCCGGGAATGTGCAGAATAAGCTGTAGTcaccac            >  2:1923980/1‑150 (MQ=255)
                                                                                                                                          ccGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGACGGTGCAGAAGAAGCTGTAGTcaccac            >  2:1006759/1‑150 (MQ=255)
                                                                                                                                          ccGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTcaccac            >  2:2343038/1‑150 (MQ=255)
                                                                                                                                          ccGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTcaccac            >  2:3456509/1‑150 (MQ=255)
                                                                                                                                          ccGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTcaccac            >  2:324237/1‑150 (MQ=255)
                                                                                                                                           cgcgAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCaccacc           >  1:4118710/1‑150 (MQ=255)
                                                                                                                                            gcgAAAACGAGGGTGAAACCACCGACGCATTCGCGGGTGAAACCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTTGCCCGGGAAGGTGCAGAAGAAGCTGTAGTcaccaaag          >  2:3727879/1‑147 (MQ=255)
                                                                                                                                              gAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCGGc        >  2:3054231/1‑150 (MQ=255)
                                                                                                                                              gAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCGGc        >  1:3343279/1‑150 (MQ=255)
                                                                                                                                                aTACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCGGCtt      >  1:2143045/1‑150 (MQ=255)
                                                                                                                                                 tACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCGGCTTc     >  1:264770/1‑150 (MQ=255)
                                                                                                                                                   cGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCGGCTTCCa   >  1:2014723/1‑150 (MQ=255)
                                                                                                                                                    gAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGGAGCTGTAGTCACCACCGGCTTCCAg  >  2:4431673/1‑150 (MQ=255)
                                                                                                                                                    gAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCGGCTTCCAg  >  1:559741/1‑150 (MQ=255)
                                                                                                                                                    gAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCGGCTTCCAg  >  1:1987898/1‑150 (MQ=255)
                                                                                                                                                    gAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCGGCTTCCAg  >  1:4117605/1‑150 (MQ=255)
                                                                                                                                                    gAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCGGCTTCCAg  >  2:3156515/1‑150 (MQ=255)
                                                                                                                                                    gAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTACGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCGGATTCCac  >  1:56145/1‑149 (MQ=255)
                                                                                                                                                     |                                                                                                                                                    
GCAGATCGATGCCTTCCTGCATGGGCAGCCGGTTGACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCGGCTTCCAG  >  NC_002947/5538882‑5539179

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: