Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 5,539,046 A→T 7.6% intergenic (+53/+50) nadE → / ← PP_4870 NH(3)‑dependent NAD(+) synthetase/azurin

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029475,539,0460AT 7.6% 364.4 / 19.0 133intergenic (+53/+50)nadE/PP_4870NH(3)‑dependent NAD(+) synthetase/azurin
Reads supporting (aligned to +/- strand):  ref base A (64/50);  new base T (2/8);  total (69/64)
Fisher's exact test for biased strand distribution p-value = 4.43e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.40e-01

Only 100 of 134 total aligned reads displayed.

TGCATGGGCAGCCGGTTGACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCGGCTTCCAGCTTGGAAGTGTCGAAC  >  NC_002947/5538899‑5539195
                                                                                                                                                   |                                                                                                                                                     
tGCATGGGCAGCCGGTTGACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACg                                                                                                                                                     <  2:1727956/150‑1 (MQ=255)
     gggCAGCCGGTTGACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTc                                                                                                                                                <  2:1091492/150‑1 (MQ=255)
       gCAGCCGGTTGACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTcgc                                                                                                                                              <  2:3927826/150‑1 (MQ=255)
        cAGCCGGTTGACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTcgcg                                                                                                                                             <  1:4070457/150‑1 (MQ=255)
        cAGCCGGTTGACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTcgcg                                                                                                                                             <  1:227317/150‑1 (MQ=255)
        cAGCCGGTTGACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCCCGAATACGAGGGTGAACCCACCGACGCATTcgcg                                                                                                                                             >  2:1108304/1‑150 (MQ=255)
         aGCCGGTTGACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATGCGTCGGTGGGTTCACCCTCGTATTCGCgg                                                                                                                                            <  2:3785425/150‑1 (MQ=25)
         aGCCGGTTGACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATGCGTCGGTGGGTTCACCCTCGTATTCGCgg                                                                                                                                            <  2:1582493/150‑1 (MQ=25)
         aGCCGGTTGACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATGCGTCGGTGGGTTCACCCTCGTATTCGCgg                                                                                                                                            <  1:1279921/150‑1 (MQ=25)
         aGCCGGTTGACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCgg                                                                                                                                            <  1:4416030/150‑1 (MQ=255)
         aGCCGGTTGACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCgg                                                                                                                                            <  1:40699/150‑1 (MQ=255)
         aGCCGGTTGACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCgg                                                                                                                                            <  2:3614268/150‑1 (MQ=255)
         aGCCGGTTGACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCgg                                                                                                                                            <  1:1734752/150‑1 (MQ=255)
         aGCCGGTTGACCAGGCAGCGTTCGACATCAGCGTCGCCACCTACCGCACGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCgg                                                                                                                                            <  1:12126/150‑1 (MQ=255)
         aGCCGGTGGACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCgg                                                                                                                                            <  1:2686401/150‑1 (MQ=255)
          gCCGGTTGACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGGTCACCCGCGCATACGAGGGTGGACCCACCCACGCAGTCGCggg                                                                                                                                           >  2:503279/1‑150 (MQ=255)
           ccGGTTGACCAGGCAGCGTTCGCCATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGACTGCGTCGGTGGGTTCACCCTCGTATTCGCGGGt                                                                                                                                          <  1:323840/150‑1 (MQ=25)
           ccGGTTGACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATGCGTCGGTGGGTTCACCCTCGTATTCGCGGGt                                                                                                                                          <  2:457198/150‑1 (MQ=25)
           ccGGTTGACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGt                                                                                                                                          <  1:4080964/150‑1 (MQ=255)
            cGGTTGACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATGCGTCGGTGGGTTCACCCTCGTATTCGCGGGTg                                                                                                                                         <  2:3412655/150‑1 (MQ=25)
              gTTGACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTCCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATGCGTCGGTGGGTTCACCCTCGTATTCGCGGGTGaa                                                                                                                                       <  2:3633326/150‑1 (MQ=21)
                tGACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAAcc                                                                                                                                     <  2:1267916/150‑1 (MQ=255)
                 gACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGGACCCACCGACGCCTTCGCGGGTGAAccc                                                                                                                                    >  2:3702984/1‑150 (MQ=255)
                             ttCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGGTCACCCGCGCATACGAGGGTGAACCCCCCCCCGCCATCGCGGGGGAACCCGCGCCAGCAggg                                                                                                                        >  1:1866664/1‑150 (MQ=255)
                                 aCATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGGTCACCCGCCAAAAAGAGGGTGAACCCACCCACCCATTAGCGGGTGTAACCCCTCCGGCCGGGGTCg                                                                                                                    >  1:336290/1‑150 (MQ=255)
                                       gcgtcgCCACCCCCCCCACCCCCCCGCACCCGCGCTCACTGCCGTGCGCTCCTTTATACGTGGCCTGCAGGCGGGGGTTCACCGGCTAATACGCGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCa                                                                                                              <  2:1330244/149‑1 (MQ=19)
                                         gtcgCCACCTCCCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGc                                                                                                            <  2:4485659/150‑1 (MQ=255)
                                             ccACCTCCCGCAACACCCAGCACACGCGCGAACTGCCGTGCGAGCCTGGATAAGGGGCCTGCTGGAGCGGGTGCCCCCGCGAATACGAGGGGGAACCCACCGACGCCTTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCttt                                                                                                        <  2:3999838/150‑1 (MQ=255)
                                             ccACCTCCCGCAACACCCAGCACAAGCGCGAACTGCGGTTCGCTCCTTGATACGTGGCCTGCAGGAGGGGGTTCACCCGCTAATACGTGGTTTAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCttt                                                                                                        <  2:1673142/150‑1 (MQ=38)
                                             ccACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGGGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCttt                                                                                                        <  2:3014466/150‑1 (MQ=255)
                                                      gCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCCCGAATACGAGGGTGAAACCACCCACCCCGTCGCGGGTGAACCCGCGCCAGCCGGGTTCGCCGTCAGCCGATGGTTACttt                                                                                               >  1:3744742/1‑149 (MQ=255)
                                                         acaCCCCGCACCAGCGCTAAGTGCCGTTCGCTCATTGATAAGTGGCCTGCTGGTGGGGGTTCCCCCGCTAATCGGAGGGTTAACCCACCGCCGCATTCGGGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACg                                                                                            <  2:1273665/148‑1 (MQ=255)
                                                             ccAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGGTCACCCGCGAATACGCGGGTGAACCCACCGCCCCAGTCGCGGGGGGACCCGCGCCGGCAGGGGTCGCCGGCCGCCGTTGATTACGTGACGCTGa                                                                                        >  2:2142978/1‑150 (MQ=255)
                                                             ccAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGGTCACCCCCGCCAAAGAGGGTGTAAACACCCCCCCCATCGCGGGTGGAACCCCACCCGCACGGGTCGCCGGCAGCCGGTTTTTACTTGACGAttt                                                                                        >  1:3270911/1‑148 (MQ=255)
                                                                gCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCCCCGACGCCTTCGCGGGTGAACCCGCGCCAGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCt                                                                                     >  2:3280182/1‑150 (MQ=255)
                                                                gCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCGCCTGCAGGGTTCGCCGTCAGCCATTGAATACTTGACGATGACCt                                                                                     >  2:2946685/1‑150 (MQ=255)
                                                                 cacaCGCGCGAACTGCCGTTCGCTCCTTGATACGTGGCCTGCAGGTGGGGGTTCACCGGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGTTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCtt                                                                                    <  2:2354230/150‑1 (MQ=255)
                                                                 cacaAGCGCGAAGTGCCGTTCGCGCCTTTATACGTGGCCTGCAGGCGCGGGTTAACCGGCGAATCCGTGGGTGAACCCACCGACGCATTCGCGGTTCAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCtt                                                                                    <  2:2354508/150‑1 (MQ=255)
                                                                      gcgcGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCCCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCATTGATTACTTGACGATGACCTTGccat                                                                               >  2:2972017/1‑148 (MQ=255)
                                                                      gcgcGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGGTCACCCCCGCAAACGAGGGTGAACCCACCCACGCAGTCGCGGGTGAACCCCCTCCAGGCGGGGTCGCCCTCCGCCGTTGATTACTTGTCGATTACCATGccgt                                                                               >  2:2779348/1‑148 (MQ=255)
                                                                         ccaccTGCCTTTCGCTCCTTGATAAGGGGCCTGCTGGTGCGGTTTCACCCGCTAATACGAGGGTCAACCCACCGACGCATTCGGGGGTTACCCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTtca                                                                            <  2:195318/146‑1 (MQ=255)
                                                                              tGCCGTTCGCTCCTTGATAAGGGGCCTGCAGGAGCGGGTTCACCCGCTAATACGAGGGTGAACCCACCGACGCATTCGGGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCatcatc                                                                       <  2:2821198/150‑1 (MQ=255)
                                                                                ccGTTCGCTCCTTGATACGTGGCGTGCAGGAGCGGGTTCACCGGCTAATCCGTGGGTGACCCCACCGCCGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCga                                                                     <  2:3129655/150‑1 (MQ=38)
                                                                                     cGCTCCTTGATAAGTGGCCTGCTGGAGCGGGTTCACCCGGGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGAtgt                                                                <  2:1275263/150‑1 (MQ=255)
                                                                                          cTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAAACCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTAGCCGTCATCCTTTGATTAATTGACGATGACCTTTCCTTTCATAATCGAGATGTGGccc                                                           >  2:4435138/1‑150 (MQ=37)
                                                                                                 cggggccggccGGCGGGGGTCCCCCGGCGAATCGGCGGGTCACCCCACCGCCGCTTTCGGGGGTCACCCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAgg                                                    <  1:2817215/147‑1 (MQ=255)
                                                                                                  ggggCCGGCTGGCGGGGGTACCCCCGCTAATAGGTGGGTGACCCCACCGACCCATGGGCGGGTGACCCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGt                                                   <  1:1180847/148‑1 (MQ=255)
                                                                                                      ccTGCTGGAGCGGGTTCCCCCGCTAATACGAGGGTGAACCCACCGACGCTTTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCag                                               <  2:1419949/150‑1 (MQ=255)
                                                                                                          cAGGAGCGGGTTCAACCCCCAATAAGAGGGTGAAACCACCCACGCAATAGCGGGTGAAACCCCTCCATCAGGGTTAGCCGTCAGCCTTTTTTTAATTTAAGATGACCATTCCTTTCAAAATAGAGATGTGGCCCGGGAAGGTGCagaaga                                           >  2:3706705/1‑150 (MQ=255)
                                                                                                            ggAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGaagaag                                         <  2:1427771/150‑1 (MQ=255)
                                                                                                              aGCGGGTTCACCCGCTAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCt                                       <  2:720703/150‑1 (MQ=255)
                                                                                                               gggggTTCACCCGCCAATACGAGGGTGAACCCACCCACGCAGTCGCGGGTCACCCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTg                                      <  1:3612460/148‑1 (MQ=255)
                                                                                                                 gggTTCACCCGCTAATACGAGGGTGAACCCACCGACGCATTCGGGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTa                                    <  1:3702984/150‑1 (MQ=255)
                                                                                                                 gggTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTa                                    <  2:3866162/150‑1 (MQ=255)
                                                                                                                 gggTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTa                                    <  2:2148041/150‑1 (MQ=255)
                                                                                                                  ggTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAg                                   >  1:1151172/1‑150 (MQ=255)
                                                                                                                   gTTCACCCGCGAATGCGTCGGTGGGTTCACCCTCGTATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGt                                  >  2:4428833/1‑150 (MQ=25)
                                                                                                                   gTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGt                                  >  1:2391190/1‑150 (MQ=255)
                                                                                                                   gTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGt                                  >  1:2391042/1‑150 (MQ=255)
                                                                                                                    ttCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTc                                 >  1:2997452/1‑150 (MQ=255)
                                                                                                                    ttCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTc                                 >  2:2504402/1‑150 (MQ=255)
                                                                                                                    ttCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTc                                 >  2:2504573/1‑150 (MQ=255)
                                                                                                                     tCACCCTCGTATTCGCGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTca                                >  2:4132979/1‑150 (MQ=255)
                                                                                                                       aCCCGCGAATGCGTCGGTGGGTTCACCCTCGTATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTcacc                              >  1:1104592/1‑150 (MQ=25)
                                                                                                                       aCCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCCGGGTTCGCCGTCAGCCTGTGCGTACGTGACGATGACCTTGCCTTTCATCATCGAGAGGTGGCCCGGGACGGTGCGGACGAAGCGGGAGTcccc                              >  2:2941089/1‑150 (MQ=37)
                                                                                                                       aCCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTcacc                              >  2:499549/1‑150 (MQ=255)
                                                                                                                         ccGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGACCCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTcaccac                            >  2:1943973/1‑150 (MQ=255)
                                                                                                                         ccGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTTCTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGGCCGGGAATGTGCAGAATAAGCTGTAGTcaccac                            >  2:1923980/1‑150 (MQ=255)
                                                                                                                         ccGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGACGGTGCAGAAGAAGCTGTAGTcaccac                            >  2:1006759/1‑150 (MQ=255)
                                                                                                                         ccGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTcaccac                            >  2:2343038/1‑150 (MQ=255)
                                                                                                                         ccGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTcaccac                            >  2:2979045/1‑150 (MQ=255)
                                                                                                                         ccGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTcaccac                            >  2:324237/1‑150 (MQ=255)
                                                                                                                         ccGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTcaccac                            >  2:3456509/1‑150 (MQ=255)
                                                                                                                          cgcgAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCaccacc                           >  1:4118710/1‑150 (MQ=255)
                                                                                                                           gcgAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCg                          >  1:2156485/1‑150 (MQ=255)
                                                                                                                           gcgAAAACGAGGGTGAAACCACCGACGCATTCGCGGGTGAAACCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTTGCCCGGGAAGGTGCAGAAGAAGCTGTAGTcaccaaag                          >  2:3727879/1‑147 (MQ=255)
                                                                                                                             gAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCGGc                        >  1:3343279/1‑150 (MQ=255)
                                                                                                                             gAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCGGc                        >  2:3054231/1‑150 (MQ=255)
                                                                                                                               attcgcgggTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCGGCtt                      >  1:103653/7‑150 (MQ=255)
                                                                                                                               aTACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCGGCtt                      >  1:2143045/1‑150 (MQ=255)
                                                                                                                                tACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCGGCTTc                     >  1:264770/1‑150 (MQ=255)
                                                                                                                                  cGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCGGCTTCCa                   >  1:2014723/1‑150 (MQ=255)
                                                                                                                                   gAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCGGCTTCCAg                  >  2:3156515/1‑150 (MQ=255)
                                                                                                                                   gAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCGGCTTCCAg                  >  1:4117605/1‑150 (MQ=255)
                                                                                                                                   gAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCGGCTTCCAg                  >  2:2589105/1‑150 (MQ=255)
                                                                                                                                   gAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCGGCTTCCAg                  >  2:4431698/1‑150 (MQ=255)
                                                                                                                                   gAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCGGTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCGGCTTCCAg                  >  1:3395230/1‑150 (MQ=255)
                                                                                                                                   gAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTACGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCGGATTCCac                  >  1:56145/1‑149 (MQ=255)
                                                                                                                                     gggTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCGGCTTCCAGCt                >  2:2724673/1‑150 (MQ=255)
                                                                                                                                      ggTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCGGCTTCCAGCtt               >  1:1563924/1‑150 (MQ=255)
                                                                                                                                       gTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCGGCTTCCAGCTTg              >  2:193924/1‑150 (MQ=255)
                                                                                                                                         gAACCCACCGACGCATGGGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCGGCTTCCAGCTTGGa            <  2:849243/150‑1 (MQ=255)
                                                                                                                                            cccACCGACGCATTCGCGGGTTAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCGGCTTCCAGCTTGGAAgt         <  2:1293828/150‑1 (MQ=255)
                                                                                                                                            cccACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCGGCTTCCAGCTTGGAAgt         >  2:4279306/1‑150 (MQ=255)
                                                                                                                                            accctcGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCGGCTTCCAGCTTGGAAgt         >  1:2570411/6‑150 (MQ=255)
                                                                                                                                              cACCGCCGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCGGCTTCCAGCTTGGAAgtgt       <  1:2587989/150‑1 (MQ=255)
                                                                                                                                               aCCGACGCTTTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCGGCTTCCAGCTTGGAAGTGTc      <  2:1151798/150‑1 (MQ=255)
                                                                                                                                                ccGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCGGCTTCCAGCTTGGAAGTGTCg     >  2:1323380/1‑150 (MQ=255)
                                                                                                                                                ccGACGCATGGGGGGGTGACCCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCGGCTTCCAGCTTGGAAGTGTCg     <  1:2779348/150‑1 (MQ=255)
                                                                                                                                                 cGACGCATTCGCGGGTGAACCAGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCGGCTTCCAGCTTGGAAGTGTCGa    >  2:1026453/1‑150 (MQ=255)
                                                                                                                                                   |                                                                                                                                                     
TGCATGGGCAGCCGGTTGACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCGGCTTCCAGCTTGGAAGTGTCGAAC  >  NC_002947/5538899‑5539195

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: