| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,557,574 | T→A | 10.0% | intergenic (‑80/+94) | PP_4887 ← / ← PP_4888 | hypothetical protein/methyl‑accepting chemotaxis transducer |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,557,574 | 0 | T | A | 10.0% | 400.8 / 11.1 | 157 | intergenic (‑80/+94) | PP_4887/PP_4888 | hypothetical protein/methyl‑accepting chemotaxis transducer |
| Reads supporting (aligned to +/- strand): ref base T (45/89); new base A (15/4); total (64/93) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.48e-04 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 160 total aligned reads displayed.
GCCGTACGCTGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCATCCAGCA > NC_002947/5557425‑5557723 | gCCGTACGCTGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAt > 2:1184119/1‑150 (MQ=255) gTACGCTGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGc < 1:1549298/150‑1 (MQ=255) cGCTGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGGc < 1:1336994/150‑1 (MQ=255) tCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTTATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCATGTGGCGCGAAAGGGCCGCAAAGCcccccccg > 2:3525402/1‑148 (MQ=255) tCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCTATGCGGcccttt < 2:1478997/150‑4 (MQ=255) tCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCTATGCGGcccttt < 2:362136/150‑4 (MQ=255) cACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCTATGCGGccctttc < 1:775024/150‑5 (MQ=255) aCTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGGCCCCGGCa < 2:432600/150‑1 (MQ=255) cagtgCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTATTGTCATGTGTCGCCGACAGCAAAGCAACACCGCTCAGGTGAGGGAGCGCCCAAATTGCGCGAAAAAGCCCCAAATAGGCCCCGGaaa > 2:1611798/3‑150 (MQ=255) tgCAGGAAATTCCGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGGCCCCGGCAAttt < 2:1637517/150‑1 (MQ=255) tgCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGGCCCCGGCAAttt < 2:2896562/150‑1 (MQ=255) tgCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGGGGGGGGGAAGGGGCGCCAAGCGGGCCCCGcccaat > 1:1663694/1‑145 (MQ=255) cAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTTTTTGGCGCAAGGGGCGCCGAGCGGCCCCCGccaaatac > 1:2659957/1‑143 (MQ=255) cAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGGCCCCGGCCAATTcc > 2:2859256/1‑150 (MQ=255) cAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGGCCCCGGCAATTTcc < 1:1872810/150‑1 (MQ=255) ggAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGGCCCCGGCAATTTCcgc < 2:905396/150‑1 (MQ=255) gAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTGGCGAAAGGGCCGCAGAGCGGCCCCCGCCAATTAcgcg > 1:2236102/1‑150 (MQ=255) aTTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGGCCCCGGCAATTTCCGCgtgt < 1:3298312/150‑1 (MQ=255) ttCAGGTCGGCCTGGGCAGCTATTCGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTa < 1:3879462/150‑1 (MQ=255) cAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGAAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATg < 1:3770951/150‑1 (MQ=255) aGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGc < 1:2335009/150‑1 (MQ=255) aGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGGCCCCCGCAATTTCCGCGTGTATGCAACAAACCAGGGgc > 2:3976034/1‑150 (MQ=255) aGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGGCGCGAAAGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGgc > 2:3976026/1‑150 (MQ=255) gATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGgctgc < 2:3278887/150‑1 (MQ=255) tAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTAt < 1:1296869/150‑1 (MQ=255) gCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGccc < 2:2893080/150‑1 (MQ=255) gCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCCAAAGGGCCCCAAAGCGGCCCCCGCAAATTCCCCGGGGATGCAACAAAACAGGGGCTGCGATGCAGccc > 2:3814495/1‑150 (MQ=37) gCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCCCGAAAGGGCCGCAAAGCGGCCCCCGCAAATTACGCGTGTATGCAACAAACCAGGGGCTGCTAAGCAcccc > 2:1035490/1‑150 (MQ=38) ggACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCATAGCAGcccca < 2:4343555/150‑3 (MQ=255) ggACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCATAGCAGcccca < 2:1523875/150‑3 (MQ=255) ggACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGGCCCCGGCAAATTCCGCGTGTATGCAACAAACCTGGGGCTGCGATGCAGCCCtt > 2:2195063/1‑150 (MQ=255) aCATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTc < 1:3943351/150‑1 (MQ=255) aCATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTAGGGCTGCATAGCAGccccagg < 2:2367743/150‑5 (MQ=38) gAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGa < 1:673981/150‑1 (MQ=255) cAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAAAGCGGCCCCGGCCAATTCCGCGGGGATGCAACAAACCAGGGGCTGCTATGCAGCCCGTTCGCGacac > 2:4415851/1‑150 (MQ=38) aCTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGGAAGGGCCGCCAAGCGGCCCCGGCCCTTTGCGCGTGTGTGGAACAAAACAGGGGCTGCTATGCAGCCCGTTCGCGACACaa > 2:3516889/1‑150 (MQ=37) aCTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTAGCGGAATGGCCCCCAAGCGGCCCCCGCCAATTACGCCGGTATTCAACAAAACAGGGGCTGCAATTCACCCCCATcgccgcccaa > 1:1833831/1‑143 (MQ=255) cTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAg < 2:4397008/150‑1 (MQ=255) tCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCCGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAgg < 1:1355831/150‑1 (MQ=255) tCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGc > 1:1083559/1‑108 (MQ=255) tCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGc < 2:1083559/108‑1 (MQ=255) tCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAgg < 2:2339915/150‑1 (MQ=255) ccTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGCAAGGGCCGCATGTCGGCCCCCGCCAATTCCGCGGGGATGCCCCAAAACGGGGGCTGCGATGCAGCCCGTTAGCGACACAAGGc > 2:1364693/1‑150 (MQ=255) cTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGGAATGGGCGCATAACGGCCCCCGCCATTTACGCGTGTATGGAACAAAACTGGGGCTGCTATGCAGCCCTTTCGCGCCAAAAGGcc > 2:93224/1‑150 (MQ=255) cTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGc > 1:4002368/1‑106 (MQ=255) ttttGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGGCCCCGGCCATTTCCGCGTGTTTGCAACAAACCAGGGGCTGCTATGCAGCCCTTTCGCGACACCAGGccc > 2:4194732/1‑150 (MQ=255) ttGTCTTGTGGCGCCGACAGCATAGAAACACCGCTCTGGTGTGGGAGGGGCGTTGGTTCGCGAAGGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAACCCTGGGGCTGCTATGCAGCCCTTGCGCGACACAAGGCCcac < 1:851604/150‑1 (MQ=255) tCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACaaa < 2:3581363/150‑1 (MQ=255) tCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGGTTCGCGAAAAGGCCGCCAAGCGGCCCCCGCCAATTACCCGGGTGTGCAACAAACCGGGGGCGGGTATGCCGCCCGTTAGCGTCACAAGGCCCACaaa > 2:3830434/1‑150 (MQ=255) cATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGCAAGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCCACAAACCAGGGGCTGCTATGCAGCCCATTCGCGACACCACGCCCCCAAAg > 2:2518523/1‑150 (MQ=38) cATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAg < 2:3079412/150‑1 (MQ=255) aTGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGa < 1:1928420/133‑1 (MQ=255) aTGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGa > 2:1928420/1‑133 (MQ=255) gtgtCGCCGACTGAATAGAAACACCGCTCTGGTGTGGTTGCGGCCTTGTGTCGCGAACGGGCCGATTAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGAc < 1:2134443/150‑1 (MQ=37) gtgtCGCCGACAGATTAGCAACACCGCTCAGGTGTGGGTGGGGCCTTGTGTGGCGAAAGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTTTGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGAc < 1:2134504/150‑1 (MQ=38) tgtgGCCTACTGAATAGCAACCCGGCTCTGGTGTGGGTGGGGGTTTGTGTCGCTAATGGGCCGCTTAGCGCCCCGGGCAATTTCCGCGTTTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGAcc < 1:3516889/150‑1 (MQ=25) tgtCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTc > 1:3729330/1‑126 (MQ=255) tgtCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTc < 2:3729330/126‑1 (MQ=255) gtCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTGGCGCAAGGGGCCCGTATCCGCCCCGGCCAATTGCGCGTGTATGCCACAAACCAGGGGCAGCGTAGGAGCCCGTTGGCGGCACAACGCCCACCAAGGAccc > 1:2958836/1‑149 (MQ=255) cctaCAGCATAGCAACACCGCTCTGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCa < 2:199511/147‑1 (MQ=255) aGCAGAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCtt < 2:552801/150‑1 (MQ=255) cATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTGGCGAAATGGCCGCCTAGCGGCCCCCGCCATTTGCGCGGGTATGCCACAAAACGGGGGCTGCTGTGCAGCCCGTTAGCGACCCAAGGCCCCCAAAGGAACCCCCAGGCGTcc > 2:965927/1‑149 (MQ=255) cATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCa < 2:3053236/150‑1 (MQ=255) cATAGCAACACCGCTCAGGTGGGGGAGCGGCCTTGTGTCGCGTAAGGGCCGCATAGCGGCCCCGGCAAGTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCa < 2:425764/150‑1 (MQ=255) cATAGAAACCCCGCTCTGGTGTGGGTGCGGCCTTGTGTCGCGAACGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAAAAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCa < 1:2758512/150‑1 (MQ=37) aTAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAg < 2:265719/150‑1 (MQ=255) tAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAATGGCCGCATAGCGGCCCCGGCAAATTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTAGCGACACAAGGCCCACAAAGGACCGCGCCGGCGTCAgg > 2:4013025/1‑150 (MQ=38) aGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGGCCCCCGCAAATTACGCCAGTTTGCAACAAACCTGGGGCTGCGATGCAGCCCGTTCGCGACACAAGGCCCACCAAGGACCCCGCAGGCGTCAGGc > 2:1457624/1‑150 (MQ=37) cAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTgg > 1:894435/1‑89 (MQ=255) aaCACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGCAAGGGCCCCCTAGCGGCCCCCGCAAATTCCGCGGGTTTGCAACAAACCAGGGGCGGCGCTGCAGCCCGTTCGCGCCACCAGGCCCCCCAAGGACCCCGCCGGCGTCATGCCCg > 2:627395/1‑150 (MQ=255) acacCGCTCTGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCgg < 1:2563235/150‑1 (MQ=255) cacCGCTCAGGTGTGGGAGCGGCCTTTTGTGGCGCAAAGGCCGCAAAGCGGCCCCCGCAAATTACGCGGGTTTTGCACAAAACAGGGGGTGCTTATCAGCCCCTTCGCGACAAAAAGCCCACAAAGGGCCCCCCAGGCGTGAGGccccgc > 2:1247423/1‑147 (MQ=255) cacCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCCCCAAGCCGCCCCCGCCAATTACCCCTGTATGCAACAAAACAGGGGCTGGGATTCAGCCCATTCGCGACACAAGGCCCCCAAACGACCGCCCCGGCGTACGGCCCGGa > 2:258739/1‑150 (MQ=255) acCGCTCAGGTGTGGGAGCGGCCTTTTGTGGCGAAAAGGCCGCCAAGCGGCCCCCGCAAATTCCCCGGTTATGGAAAAAAACAGGGGCTGGGAATCAGCCCATTAGCGACACAACGCCCACAAAGGACCCCGCAGGCGTCACGCCCCGaa > 2:3032067/1‑150 (MQ=255) cGCTCAGGTGTGGGAGCGGCCTTGTGTAGCGAAAGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTTTTGAACAAAACGGGGGCTGGGATGCAGCCCGTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCCGAACt > 2:2536022/1‑150 (MQ=37) ctctGGTGTGGGAGCGGCCTTGGGTCGCGAACGGGCCGCATAGCGCCCCCGGCAAGTCCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTgg < 1:1272164/150‑1 (MQ=38) cTCAGGTGTGGGCGCGGCCTTGGGCCGCGAACGGGCCGCATCGCGGCCCCGGCAATTCCCGCGTGTATGCAACAACCCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTgg < 1:918034/150‑1 (MQ=38) cTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTgg < 1:2932268/150‑1 (MQ=255) gtgtGGGAGCGGCCTTGTGTCGCTATAGGGCCGCATAGCGGCGCCGGCAATTTCCGCGTGTATGCATCAAACCTGGGGCTTCTTTGCAGGCCTTTCGCGACACAAGGCCCTCAAAGGACCGCGCAGGCCTCAGGCCGGGAACTGGCCCAg < 2:3448986/150‑1 (MQ=38) tgGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCt < 2:78757/150‑1 (MQ=255) gggAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTg < 2:4130425/150‑1 (MQ=255) gCCTTGGGTCGCGAAAGGGCCGCATAGCGGCCCCGGCAATGTCCGCGTGTATGCAACAAACCGGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCa < 1:3359366/150‑1 (MQ=255) ttGTGTCGCGAAAGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCt > 1:4500140/1‑150 (MQ=255) tgtCGCGAAAGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAg > 2:3384194/1‑150 (MQ=255) tCGCGACTGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAgcc < 1:2031366/150‑1 (MQ=255) tCGCGAATGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGcc < 1:1003944/72‑1 (MQ=255) tCGCGAACGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAACCCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAgcc < 1:276644/150‑1 (MQ=255) tCGCGAAAGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAgcc > 1:2735798/1‑150 (MQ=255) gcgAAGGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAgccgc > 2:3657017/1‑150 (MQ=255) gcgAAAGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCgg < 2:818523/118‑1 (MQ=255) gcgAAAGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAgccgc < 2:2316290/150‑1 (MQ=255) gcgAAAGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAgccgc < 2:1764831/150‑1 (MQ=255) gAAAGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCa < 2:1576887/150‑1 (MQ=255) ggCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGac < 2:2164665/73‑1 (MQ=255) ggCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGac > 1:2164665/1‑73 (MQ=255) ccGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGatcatc > 1:4096242/1‑150 (MQ=255) cATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCATCCAg < 1:423575/150‑1 (MQ=255) aTAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCATCCAGc < 2:1150109/150‑1 (MQ=255) tAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCATCCAGCa < 2:3456534/150‑1 (MQ=255) tAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCGGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCATCCAGCa < 2:585478/150‑1 (MQ=255) | GCCGTACGCTGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCATCCAGCA > NC_002947/5557425‑5557723 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |