Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 5,758,660 A→C 9.3% intergenic (+359/‑329) glnG → / → PP_5050 two‑component system DNA‑binding response regulator GlnL/GlnG/transposase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029475,758,6600AC 9.3% 424.0 / 2.8 168intergenic (+359/‑329)glnG/PP_5050two‑component system DNA‑binding response regulator GlnL/GlnG/transposase
Reads supporting (aligned to +/- strand):  ref base A (71/76);  new base C (10/11);  total (81/87)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 173 total aligned reads displayed.

TAAACCCGCGCCTACCACGGCGGTGGGCACATATCGGGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGCGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACCACGGCGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGG  >  NC_002947/5758511‑5758809
                                                                                                                                                        |                                                                                                                                                      
tAAACCCGCGCCTACCACGGCGGTGGGCACATATCGGGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGCGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACCa                                                                                                                                                        <  2:1604481/150‑1 (MQ=255)
tAAACCCGCGCCTACCACGGCGGTGGGCACATATCGGGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGCGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTAACa                                                                                                                                                        >  2:3582588/1‑150 (MQ=255)
gaaccccGCGCCGACCACGGCGGGGGGCACATATCGGGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGCGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACCa                                                                                                                                                        <  1:4066858/146‑1 (MQ=255)
    cccGCGCCTACCACGGCGGTGGGCACATATCGGGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGCGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCGCCACCGTATTCGCGGGTTAACCCGCTCCTAACCCGGc                                                                                                                                                    >  1:1514478/1‑150 (MQ=255)
     ccGCGCCTACCACGGCGGTGGGCACATATCGGGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGCGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACCAAGGCg                                                                                                                                                  >  1:4397233/1‑150 (MQ=255)
      cgcgCCTACCACGGCGGTGGGCACATATCGGGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGCGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACCACGGCGt                                                                                                                                                 <  1:1571143/150‑1 (MQ=255)
       gcgcCTTCCACGGCGGTGGGCACATATCGGGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGTGGCCGCGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACCACGGCGTg                                                                                                                                                <  1:3186878/150‑1 (MQ=255)
       gcgcCTACCACGGCGGTGGGCACATATCGGGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGCGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACCACGGCGTg                                                                                                                                                >  2:545343/1‑150 (MQ=255)
       gcgcCTACCACGGCGGTGGGCACATATCGGGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGCGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACCACCGCGTg                                                                                                                                                >  1:4222443/1‑150 (MQ=255)
       gcgcCTACCACGGCGGTGGGCACATATCGGGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGCGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTAACACGGCCTg                                                                                                                                                >  1:3253962/1‑150 (MQ=255)
          ccTACCACGGCGGTGGGCACATATCGGGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGCGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACCACGGCGTGGac                                                                                                                                             <  2:384633/150‑1 (MQ=255)
           cttccATGGCGGTGGGCACATATCGGGGTCGTCGTAGGAGCGGGTTCACCCGCGACGAGGCCGCGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACCACGGCGTGGaca                                                                                                                                            <  1:1007494/147‑1 (MQ=255)
            ttccccggcggTGGTCACATATCGGGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGCGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTCCTACCACGGCGTGGacac                                                                                                                                           <  2:3734400/145‑1 (MQ=255)
              ccACGGCGGTGGTCACATATCGGGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGCGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACCACGGCGTGGacacac                                                                                                                                         <  2:2260722/150‑1 (MQ=255)
               cACGGCGGTGGGCACATATCGGGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGCGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTACTAGCACGGCgggggaagaga                                                                                                                                        >  1:1370214/1‑143 (MQ=17)
               cACGGCGGTGGGCACATATCGGGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGCGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCCCTCCAACCACCGCGTGGAcacaca                                                                                                                                        >  1:574104/1‑150 (MQ=255)
                 cggcggTGGGCACATATCGGGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGCGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACCACGGCGTGGACACACATc                                                                                                                                      <  1:1276985/150‑1 (MQ=255)
                 cggcggTGGGCACATATCGGGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGCGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACCACGGCGTGGACACACATc                                                                                                                                      >  1:2977710/1‑150 (MQ=255)
                    cggTGGGCACATATCGGGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGCGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACCACGGCGTGGACACACATcgcg                                                                                                                                   <  1:2061013/150‑1 (MQ=255)
                     ggTGGCCACAGATCGGGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGCGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACCACGGCGTGGACACACATCGCgg                                                                                                                                  <  2:530497/150‑1 (MQ=255)
                       tGGGCACATATCGGGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGCGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACCACGGCGTGGACACACATCGCGgtc                                                                                                                                <  1:193462/150‑1 (MQ=255)
                          taacaTTTCGGGGTCGTCGTAGGTGCGGTTCAACGCGAGTCTAGGCCGTGCCTGATGGGAATCTTCCACGTGCGTTCGAGCGTTCCGGCCGCACCCTTTTTCTCTGGTATTCCCGCTCCTACGAGGGGGTGGACACACATCGCGgtcgtc                                                                                                                             <  2:28425/148‑1 (MQ=255)
                          gCACATATCGGGGTAGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGCGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACCACGGCGTGGACACACATCGCGgtcgtc                                                                                                                             <  2:2457794/150‑1 (MQ=255)
                           cacaTCTCGGGGTCGTCGTAGGAGCGGGGTCACCCGCGAAGAGGCCGCGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCGCCACCGTATTCGCGGGTATACCCGCTCCTACCACGGCGTGGACACACATCGCGGtcgtcg                                                                                                                            <  1:3887021/150‑1 (MQ=255)
                              agatCGGGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGCGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACCACGGCGTGGACACACATCGCGGTCGTCGTAg                                                                                                                         <  2:3177004/148‑1 (MQ=255)
                                  ccgggTCGTCGTAGGAGCGTGTTCACCCGCGAAGAGGCCGCGCCTTCTCGCCAATCTCAACCTGACTTTCAGCGTTGCCGCCTTCACATTTTTCTCTGGTAATCCCGCTCCTAACACGGCGTGGACACACATCGCGGTCGTCGTAGGAGc                                                                                                                     <  2:3043237/148‑1 (MQ=255)
                                  cGGGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGCGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACCACGGCGTGGACACACATCGCGGTCGTCGTAGGAGc                                                                                                                     <  1:3371294/150‑1 (MQ=255)
                                  cGGGGTCGTCGTAGGAGCGGGTTCACCCGCAAAGACCCCGCTCCGGCAGGCCAATCCCCACCTGCCGTCCAGCGGTGCCTCCGCCACCTTAGGCGCTGGTCAGCCCCCTCCGCGCAGGGGGTGGACACACATCGCGGTCGTCGTAGGAGc                                                                                                                     <  2:25112/150‑1 (MQ=12)
                                    gggTCGTCGCAGGAGCGGCTACCCCCGCGAATAGGCCGCGCCAGCCGGCCTATCTCCACCCCCCGTCGTCCTTTGCGGCCGCCACCGAATTAGTTGGTAAACCCTCTACGCCGACGGCGTGGACACACATCGCGGTCGTCGTAGGAGCgg                                                                                                                   <  2:3015490/150‑1 (MQ=255)
                                       tcgtcgTAGGAGCGGGTTCACCCGCGAAGAGGCCGCGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACCACCGCCGGGACACCCAGCGCGGGCGGCGTAGGAGCcgggt                                                                                                                >  2:193753/1‑148 (MQ=17)
                                             tAGGAGCGGGTTCACCCGCGAAGAGGCCGCGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTGCTACCCCGGCGTTGACACAAATGGGGGTGGTCCTAGGTGGGGGTTGACCcg                                                                                                          >  2:918865/1‑150 (MQ=14)
                                              aGGAGCGGGTTCACCCGCGTAGAGGCCGCGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACCACGGCGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCcgc                                                                                                         <  1:2999279/150‑1 (MQ=255)
                                               ttcgCGGGTGAACCCGCGAAGAGGCCGCGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACCCCGGCGTGGAAACACATCGCGGTCGGCGTAGGACCGGGTTCACCcgcg                                                                                                        >  2:4142393/4‑150 (MQ=17)
                                                 aGCGGGTTCACCCGCGACGAGGCCGCGCCGGCGGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACCACGGCGTGGACACCCATCGCTGTCGTCGTAGGAGCGGGTTCACCCGCGaa                                                                                                      <  2:183369/150‑1 (MQ=17)
                                                 aGCGGGTTCACCCGCGAAGAGGCCGCGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACCACGGCGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGaa                                                                                                      <  2:740921/150‑1 (MQ=255)
                                                 aGCGGGTTCACCCGCGAAGAGGCCGCGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACCACGGCGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGaa                                                                                                      <  1:439126/150‑1 (MQ=255)
                                                   cGGGTTCACCCGCGAAGAGGCCGCGCCTGCTGGCCAATCTCCCCCTGCCGTTCAGCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACCACGGCGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAaga                                                                                                    <  2:1714691/150‑1 (MQ=255)
                                                   cGGGGTCACCCGCGACGACGCCGCGCCAGCTGGCCAATGTCCCCCTGCCTCTCTGCGTTGCCGCCGCCCCCGTCTTCGCGGCTAAACCCGCTCCGACCAGGGGGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAaga                                                                                                    <  2:1311463/150‑1 (MQ=17)
                                                       ttCACCCGCGAAGAGGCCGCGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACCACGGCGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGcc                                                                                                >  2:1488960/1‑150 (MQ=255)
                                                       ttCACCCGCGAAGAGGCCGCGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACCACCGCGTGGACACACATCGCGGTCGTCGTAGGAGCGGGGTCACCCGCGAAGAGGcc                                                                                                >  2:3134468/1‑150 (MQ=255)
                                                         cACCCGCGACGAGGCCGCGCCTGCTGGCCAATCTCCACCGGCCGTTCAGCGTTGCGGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACCACGGCGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCgg                                                                                              <  2:2965824/150‑1 (MQ=255)
                                                          aCCCGCGAAGAGGCCGCGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACCCCGGCGGGGACACACATCGCGGTCGGCGTAGGAGCGGGGTCACCCGCGAAGAGGCCggg                                                                                             >  2:2328715/1‑150 (MQ=255)
                                                           cccGCGACGAGGCCGCGCCTGGTGGCCAACCTCCCCCTGCCGTTCAGGGTTGCCGCCGCCACGGTATGCGCGGTTAACCCCGCTCCTCCCCCGGCGTGGACACACATCGGGGTCGTCGTAGGAGCGGGTTCACCGGCGAAGAGGCCGGGc                                                                                            <  1:186830/150‑1 (MQ=17)
                                                           cccGCGAAGAGGCCGCGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACCACGGCGTGGACACGCATCGCGGTCGTCGGAGGAGCGGGTTCACCCGCGAAGAGGCCGGGc                                                                                            >  2:3376680/1‑150 (MQ=255)
                                                            ccGCGAAGAGGCCGCGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACCACGGCGTGGACACACATCGCGGTCGTCGTAGGAGCGGGGTCACCCGCGCAGAGGCCGGGcc                                                                                           >  2:2865234/1‑150 (MQ=255)
                                                                   gagGCCGCGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACCCCGGCGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGCCAGCTGGc                                                                                    >  1:2148911/1‑150 (MQ=255)
                                                                      gCCGCGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCGCCACCGTATTCGCGGGTCAACCCGCTCCTACCACGGCGGGGGCACCCAGCGCGGGCGGCGTAGGTGCGGGGTCACCCGCGCAGAGGCCCGGCCGGCTGGCCaa                                                                                 >  2:946146/1‑150 (MQ=14)
                                                                           gcCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACCACGGCGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTcc                                                                            <  1:2590390/150‑1 (MQ=255)
                                                                           gcCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACCACGGCGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTcc                                                                            <  1:3447238/150‑1 (MQ=255)
                                                                            ccTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACCACGGCGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCCAAGAGGCCCGGCCGGCTGGCCAATCTccc                                                                           >  2:105548/1‑149 (MQ=255)
                                                                                     cAATCTCCACCTGCCGTTCAGCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACCACGGCGTGGACACACATCGCGGTCGTCGTAGGAGCGGGGTCACCCGCGAAGAGGCCGGGCCAGCTGGCCAATCACCACCTGCCGtt                                                                  >  2:615676/1‑150 (MQ=255)
                                                                                                     gTTCAGCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTAACACGGCGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTAACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTACACCAGCCCTTAAGCGTTGCCGccac                                                   >  1:1388338/1‑150 (MQ=17)
                                                                                                      ttCAGCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACCACGGCGTGGACACACATCGCGGGCGTCGTAGGTGCGGGTTCACCCGCGAAGAGGCCGGGTCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGccacc                                                  >  2:796902/1‑150 (MQ=255)
                                                                                                             gTTGCCGCCGCCACCGTATTCGCGGTTAAACCCGCTCCTACCACGGCGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCACCACCGTa                                            <  2:2814843/150‑1 (MQ=255)
                                                                                                               tttacccgccACCGTATTCGCGGGTAAACCCGCTCCTACCACGGCGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCACCACCGTAtt                                          >  2:3244102/6‑150 (MQ=255)
                                                                                                                gccgccgccACCGTATTCGCGGGTAAACCCGCTCCTACCACGGCGTGGACACACATAGCGGTCGTCGTAGGGTCGGGTTCACCCGCCACGAGGCCGGGCCTGCTGGCCAATCTCCACCGGCCGTTCAGCGTTGCCGCCACCCCCgggtgc                                         >  2:3240381/1‑145 (MQ=17)
                                                                                                                 ccgccgccACCGTATTCGCGGGTAAACCCGCTCCTAACACGGCGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCACCACCGTAttag                                        >  2:608652/1‑148 (MQ=255)
                                                                                                                    ccgccACCGTATTCGCGGGTAAACCCGCTCCTACCCCGGCGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCACCACCGTATTCGCgg                                     <  2:2914048/150‑1 (MQ=255)
                                                                                                                    ccgccACCGTATTCGCGGGTAAACCCGCTCCTACCACGGCGTGGACACACATCGCGGTCGTCGTTGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCACCACCGTATTCGCgg                                     <  1:2886356/150‑1 (MQ=255)
                                                                                                                      gccACCGTATTCGCGGGTAAAACCGCGCCTACCACCGCGTGGACACACAACGCGGTCGTGGTAGGAGCGGGTTCACCCCCCAAGAGGCCGGGCCAGCTGGCCAAAATCCACCAGCCGTTCAGCGTTGCCGCCACCACCCAAATAGCGGGt                                   >  1:224628/1‑150 (MQ=14)
                                                                                                                         aCCGTATTCGCGGGTAAACCCGCTCCTACCCCGGCGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCACCACCGTATTCGCGGGTaaa                                <  1:963839/150‑1 (MQ=255)
                                                                                                                          ccGTATTCGGGGGTAACCCGCCTCGTACCCGGGCGTTGACACACATCGCGGTCTTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCACCACCGTATTCGCGGGTAAAc                               <  1:2305299/150‑1 (MQ=14)
                                                                                                                            cgaTTCGGGGGTTAACCCGCCCCCTACCCCGGCGTGGTCACAACTCGCGGTCTTCGTTGGAGCGGGTTCAGCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCACCACCGTATTCGCGGGTAAAcc                              <  2:1418131/148‑1 (MQ=14)
                                                                                                                                gcgcgGGTAAACCCGCTCCTCCCCCGGGGTTGACACACATGTCGGTGGTAGTTGTCTCGTGTCGTGCGGCGTAGAGGGCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCtt                         <  1:1945747/149‑1 (MQ=9)
                                                                                                                                acgggggTAAACCCGCCCGGCCCACGGGGTGGCCACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGACGAGGCCGGGCCTTCGGGCCAAACTCCCCCTGCCGTTCAGCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCtt                         <  1:2222903/146‑1 (MQ=14)
                                                                                                                                  gcgGGTAAACCCGCTCCTACCACGGCGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTTGt                       >  2:4260196/1‑150 (MQ=255)
                                                                                                                                  gcgGGTAAACCCGCTCCTACCACGGCGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTTGt                       >  2:4475062/1‑150 (MQ=255)
                                                                                                                                  gcgGGTAAACCCGCTCCTACCACGGCGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTTGt                       >  2:308668/1‑150 (MQ=255)
                                                                                                                                  gcgGGTAAACCCGCTCCTACCACGGCGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTTGt                       >  1:1766284/1‑150 (MQ=255)
                                                                                                                                  gcgGGTAAACCCGCTCCTACCACGGCGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTTGt                       >  1:1356848/1‑150 (MQ=255)
                                                                                                                                  gcgGGTAAACCCGCTCCTACCACGGCGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTTGt                       >  1:1356821/1‑150 (MQ=255)
                                                                                                                                    gggTAAACCCGCTCCTACCACGGCGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTTGTAt                     >  2:1892948/1‑150 (MQ=255)
                                                                                                                                    ggcaaaccccGCCCCTCCCCCGCCGAGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCCCCCGCGCAGAGGCCGCGCCAGCTGGACAATCTCCACCTGCCGGTCCGCGTTGCCCCCTCCACCGTATTCGCGGGTAAACCCGCTTGTAt                     <  2:3752175/143‑1 (MQ=14)
                                                                                                                                      gTAAACCCGCTCCTACCACGGCGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTTGTATgg                   >  1:3105294/1‑150 (MQ=255)
                                                                                                                                       tAAACCCGCTCCTACCACGGCGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTTGTATGGt                  >  2:1159895/1‑150 (MQ=255)
                                                                                                                                       tAAACCCGCTCCTACCACGGCGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTTGTATGGt                  >  2:1159892/1‑150 (MQ=255)
                                                                                                                                        aaccccGCCCCCCCCCCGGGGTGGGCCCACAGCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTTGTATGGTa                 <  2:7902/147‑1 (MQ=14)
                                                                                                                                        aaaCCCGCTCCTACCACGGCGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTTGTATGGTa                 <  2:1514478/150‑1 (MQ=255)
                                                                                                                                        aaaCCCGCTCCTACCACGGCGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTTGTATGGTa                 <  2:4397233/150‑1 (MQ=255)
                                                                                                                                        aaaCCCGCGCCCCCCCGGGGGTGGACACACATCGGGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTTGTATGGTa                 <  2:3659500/150‑1 (MQ=14)
                                                                                                                                           cccGCTCCTACCACGGCGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTTGTATGGTAGGa              >  2:613096/1‑150 (MQ=255)
                                                                                                                                           cccGCTCCTACCACGGCGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTTGTATGGTAGGa              >  2:2257950/1‑150 (MQ=255)
                                                                                                                                           cccGCTCCTACCACGGCGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTTGTATGGTAGGa              >  1:3862422/1‑150 (MQ=255)
                                                                                                                                            ccGCTCCTACCACGGCGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTTGTATGGTAGGAc             >  2:4007185/1‑150 (MQ=255)
                                                                                                                                            ccGCTCCTACCACGGCGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTTGTATGGTAGGAc             >  2:3988671/1‑150 (MQ=255)
                                                                                                                                                 tCCTACCACGGCGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGa         <  1:3582588/150‑1 (MQ=255)
                                                                                                                                                  ccTACCACGGGGTGGACACAGATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGaa        <  2:4222443/150‑1 (MQ=255)
                                                                                                                                                   cTACCACGGGGTGGACACACATCGGGGTCGTCGTAGGAGCGGGTTCACCCGCTAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAg       <  1:3109974/150‑1 (MQ=255)
                                                                                                                                                   cTACCACGGCGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAg       >  2:4173715/1‑150 (MQ=255)
                                                                                                                                                   cTACCACGGCGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAg       >  1:2996176/1‑150 (MQ=255)
                                                                                                                                                    tACCACGGCGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAgg      >  2:427491/1‑150 (MQ=255)
                                                                                                                                                     aCCACGGCGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAggg     >  1:602411/1‑150 (MQ=255)
                                                                                                                                                     aCCACGGCGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAggg     <  1:544267/150‑1 (MQ=255)
                                                                                                                                                      ccACGGCGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGgga    <  1:1008961/150‑1 (MQ=255)
                                                                                                                                                      ccACGGCGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGgga    <  2:2090876/150‑1 (MQ=255)
                                                                                                                                                      ccACGGCGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGgga    <  1:193520/150‑1 (MQ=255)
                                                                                                                                                       cACGGCGGTGGGCACATATCGGGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGCGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAggg     <  1:3637991/149‑1 (MQ=11)
                                                                                                                                                       cACGGCGGTGGGCACATATCGGGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGCGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAggg     >  2:3637991/1‑149 (MQ=11)
                                                                                                                                                       cACGGCGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGggag   >  1:2019799/1‑150 (MQ=255)
                                                                                                                                                        aCGGCGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGggagg  >  2:3593339/1‑150 (MQ=255)
                                                                                                                                                        |                                                                                                                                                      
TAAACCCGCGCCTACCACGGCGGTGGGCACATATCGGGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGCGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACCACGGCGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGG  >  NC_002947/5758511‑5758809

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: