| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,899,751 | G→A | 8.0% | intergenic (‑173/+61) | PP_5172 ← / ← PP_5173 | hypothetical protein/RND family transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,899,751 | 0 | G | A | 8.0% | 411.9 / 18.6 | 137 | intergenic (‑173/+61) | PP_5172/PP_5173 | hypothetical protein/RND family transporter |
| Reads supporting (aligned to +/- strand): ref base G (60/66); new base A (4/7); total (64/73) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.42e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.90e-01 | |||||||||||
Only 100 of 147 total aligned reads displayed.
CGCCGGGCAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGA > NC_002947/5899602‑5899900 | cgcCGGGCAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACgg < 2:3771678/150‑1 (MQ=255) gcCGGGCAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACggt < 2:1450747/150‑1 (MQ=255) cggggCAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACggtg < 1:413243/148‑1 (MQ=255) ccGGGCAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACggtg < 2:2774700/150‑1 (MQ=255) cAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGa < 1:3433180/150‑1 (MQ=255) cAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGa < 1:3128170/150‑1 (MQ=255) agagGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATATTTGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGAt < 1:3080656/150‑1 (MQ=255) gagGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATg < 1:3476443/150‑1 (MQ=255) gagGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATg < 2:1772264/150‑1 (MQ=255) gagGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATg < 1:918366/150‑1 (MQ=255) gagGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATg < 1:3776126/150‑1 (MQ=255) gagGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATg < 1:1318668/150‑1 (MQ=255) ggTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCa < 2:3587400/150‑1 (MQ=255) ggTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCa < 2:3587426/150‑1 (MQ=255) aaGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCAtag > 1:2521090/1‑148 (MQ=255) aaGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCg < 2:1493189/150‑1 (MQ=255) aaGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTAACCGCGAAAACGGTGGTCGATGCACCAACg > 1:2642031/1‑150 (MQ=255) aGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGc < 1:2113502/150‑1 (MQ=255) ccggTTTTCCGCCTGGCTTGACCCAAATATTAGAGAGGCGGTATTATACTTAAAAATACTGTTTAACAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCa < 1:3491722/148‑1 (MQ=255) tttGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTcgc < 2:3395870/150‑1 (MQ=255) tgtGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTcgc < 2:3280600/148‑1 (MQ=255) ttGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTcgcg < 1:3486963/150‑1 (MQ=37) ttGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGATGGTGCATCGACCACCGTATTcgcg < 2:610230/150‑1 (MQ=37) ttGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCCCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTcgcg < 1:3311276/150‑1 (MQ=25) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGCgg < 1:3272683/150‑1 (MQ=25) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCgg < 1:4356339/150‑1 (MQ=255) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCgg < 1:3107138/150‑1 (MQ=255) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCgg < 1:1871881/150‑1 (MQ=255) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCgg < 2:4103664/150‑1 (MQ=255) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACCGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCCCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGCgg < 2:2418438/150‑1 (MQ=25) tGCGCCTGGCTGGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCgg < 2:2120419/150‑1 (MQ=255) gcgcCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGGTTACCCGCGAATACGGGGGTCGCTGCACCATCGCATTCGCggg > 2:2851780/1‑150 (MQ=255) cTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTaaa < 1:24872/150‑1 (MQ=255) gCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATATGGTGGTCGATGCACCATCGCATTCGCCGGTAAAccc > 1:107310/1‑150 (MQ=255) cTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCgg < 1:1713720/141‑1 (MQ=255) ttGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAAAACCGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGc > 2:550739/1‑150 (MQ=255) ggCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTa > 2:1472755/1‑150 (MQ=255) cAATAGTAGTGAGGCGTGTTTATTATTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAATACAACACGCCTCTGGTTGGAGCGGGTTTACCCGAGAATAGGGTGGTCGATGCACCAACGCATTCGCGGGTAAACCCGCTCCTAcc < 2:2470568/150‑1 (MQ=38) aaTAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCa > 1:1852309/1‑150 (MQ=255) tagtagTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCA‑gg > 2:4305762/1‑150 (MQ=255) tagtagTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCAACGCATTCGCGGGTAAACCCGCTCCTACCA‑gg > 2:4305697/1‑150 (MQ=255) gtagtGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCA‑gggg > 2:2152108/1‑150 (MQ=255) gtGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTTCCCGCGAATACGGTGGTCGATGCACCATCGCAGTAGCGGGGAAACCCGCTCCAACCA‑GGGGCCa > 1:4022140/1‑150 (MQ=255) tgcggCGGGATTATTCTTAAAAATACTGTTTAAGATTTTTTATATAACCATTTAAGAGAACAGGCCTCTGGTCGGAGCGGGTTTACCCGCGAATCGGGTGGTCGATGCACCATCGCATTCGCGGGAAAACCCGCTCCTACCA‑GGGGCCat < 2:2102865/147‑1 (MQ=38) tGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGGGTTCCCGCGCAAAAGGTGGGCGATTCACCATAGCATTCGCGGGTAAACCCGCGCCGACCACGGGGccg > 1:616753/1‑149 (MQ=255) gCGGTATTATTCTAAAAAATATTTTTTAATAATTTTTATATAACATTTTAAGAGAACACGCATCTGGTTGGAGCGGTTTTACCCGCTAATAGGGTGTTCGATGCACCATCGCATTGGCGGTTAAACCCGCTCCTACCA‑GGGGCCATATgg < 1:3295176/150‑1 (MQ=255) gCGGGATTATTCTTAAAAATACTGTGTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCA‑GGGGCCATATgg < 2:3571966/150‑1 (MQ=255) ttCTTAAAAATACTGTTTAAGATTTTTTATATAACCTTTTAAGAGACCACGCCTGTGGTTGGCGGGGGTTTACCCGCGAATAGGGTGGTCGACGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAgg < 2:1225489/150‑1 (MQ=38) ttAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTTAACCCGAAAAAGGGGGTCGATTCACCAACGCAGTCGCGGGGAAACCCCCACCTACCC‑GGGGCCCTATGGGGCGTCAGGCgg > 1:2404783/1‑149 (MQ=255) ttAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCgt < 2:3124750/150‑1 (MQ=255) ttAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCACCGCATTCGCGGGTAAACCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCgt < 2:2770154/150‑1 (MQ=255) ttAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAAAACGGTGGTCGATGCACCCTCGCATTCGCGGGTAAACCCGCACCGACCA‑GGGGCCAGATGGGCCGTCACGCgt > 2:2454633/1‑150 (MQ=38) ttAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTAACCGCGAATACCGTGGTCGATGCACCAACGCATTCGCGGGTAAACCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCgt > 1:1862340/1‑150 (MQ=255) aCTGTTTAAGAATTTTTATATAACCATTTACCAGACCACGCCTCTGGTCGGCGCGGGTTTACCCGCGAATAGGGTGGTCGATGCACAATCGCATTCGCGGTTAACCCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGc < 1:2179242/150‑1 (MQ=38) aatattttttATATAACAATTTAAGACACCACGCCTCTGGTAGGCGCGGTTTTACCCGCGAATAGGGTGGTCGATGCACCATCGCATTCGGGGGTAAACCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTcgc < 1:291630/145‑1 (MQ=38) tttttATATACCCATTAACGAGAACACGCCTGTGGTCGGCGCGGGTTTACCCGCTAATACGGTGGCCGATGCACCATCGCATTCGCGGTTAACCCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATc < 1:2500596/150‑1 (MQ=255) tttttATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACCGTGGTCGATGCCCCATCGCATTCGCGGGTAAACCCGCTCCTACCA‑GGGGCCATATGGGCCGTCAGGCGGGTTTCTgcggctcgcggctc > 2:513029/1‑150 (MQ=38) tttttATATAACATTTTAAGAGACCCCGCCTCTGGTAGGAGCGGTTTTACCCGCGAATACGGTGGTCGATGTACCATCGCATTCGCGGTTAAACCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATc < 1:1403478/150‑1 (MQ=255) ttttATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCt < 2:2025147/150‑1 (MQ=255) tatataACCATTTCAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTACACCCGCTCCTACCA‑GGGGCCAGATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGt < 2:4502601/150‑1 (MQ=255) tataACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTAc > 2:1108392/1‑150 (MQ=255) taACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATGGCATTCGCGGGTAAACCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCa < 2:2341409/150‑1 (MQ=255) taACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACCGTGGGCGATGCACCATCGCATTAGCGGGTAAAACCGCTCCTACCA‑GGGGCCATAAGGGCCGTCCGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCa > 1:4054938/1‑150 (MQ=38) cacattttAACAGACCACGCCTGTGGTTGGCGGGGGTTTACCCGCTATTACGGTGGTCTAGCCACCATCGCATGCGGGGCAAAACCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAg < 1:550739/145‑1 (MQ=255) aaCCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTTGCCGCGAATAAGGTGGTGGATGCACCATCGCATTAGCGGGTAAAACCGCTCCTACCA‑GGGGCCATATTGGCCTTCAGGGGTTTTTGTGCGGCTCGCGGATCTTTTAGCAg > 1:2632147/1‑150 (MQ=255) tttAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCCGGTAAACCCGCTCCAACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCGTGTACCAGGCCAc > 1:4066816/1‑150 (MQ=255) tAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGt > 1:4102521/1‑150 (MQ=255) acccGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAgcgc < 2:2268852/147‑1 (MQ=255) cacGCCTCTGGTAGGAGCGGGTTTACCCGCGCATACGGTGGTCGGTGCACCATCGCAGTCGCGGGTAAACCCGCTCCTACCA‑GGGGCCCTATGGGCCGTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCCGGCCACGTACAGCGcc > 2:262133/1‑150 (MQ=38) cacGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCA‑GGGGCCCTCTGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCCCGTACAGCGcc > 2:262691/1‑150 (MQ=255) ctctGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCAGCGCCTTCGCGGGTAAACCCGCTCCGACCA‑GGGGCCATATGGGCCTTCAGGCGGGGTTCTGCGGCTCGCGGGTCTTGGACCCGGCCCCGTACAGCGCCGGCAg > 2:4233601/1‑150 (MQ=37) ccctGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTcgc > 2:1932444/3‑57 (MQ=255) ccctGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTcgc < 1:1932444/55‑1 (MQ=255) tgtggtggGCGCGGGTTTCCCCGCTAAGCGGGGGGTCGAGGCACCAGCGCTGTCGCGGGTAACCCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAgg < 1:2803179/148‑1 (MQ=255) tGGTCGGTGGGGGTTTACCGGCGATTAGGGTGGACTATGCACATTCGAATCGGGGGGTAAACCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGaa < 1:3036890/150‑1 (MQ=255) tGGTAGGAGCGGGTTTACCCCCCCAAAAGGTTGTCGCTGCCCCAACGCAATAGCGGGGAAACCCGCGCCGACCC‑CGGGCCCCATGGGCCGTCAGGCGGGTTTCAGCGGCTCGCGCAACTTGTACCACGCCCCCAACAGCCCCCGCAGGaa > 2:1917501/1‑150 (MQ=255) gTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAAca < 2:2100378/150‑1 (MQ=255) aGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAAcagc > 2:688836/1‑150 (MQ=255) aGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAAcagc < 2:1409374/150‑1 (MQ=255) cgCGGGTTTCCCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACagcagc < 2:2016223/149‑1 (MQ=255) ggggTTTACCCGCGAATCCGGGGGGCGCTGCACCATCGCCTTCGCGGGTACCCCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGt < 1:615277/149‑1 (MQ=255) ggTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCa > 2:2821696/1‑150 (MQ=255) ggTTGACCCGCGAATACGGTGGTCGAGGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCa < 2:114634/150‑1 (MQ=255) gTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAg > 1:3594044/1‑150 (MQ=255) gTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAg > 2:1703692/1‑150 (MQ=255) gTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAg > 2:1703626/1‑150 (MQ=255) ccGCGAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCA‑GAGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 2:857671/1‑150 (MQ=25) ccGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGACCAGCAGCGTCAGCAAGGt > 2:3887390/1‑150 (MQ=255) ccGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 2:3887373/1‑150 (MQ=255) ccGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 1:1213081/1‑150 (MQ=255) ccGCGAATACGGTGGTCGATGCACCATCGAATTCGCGGGTAAACCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 2:1033848/1‑150 (MQ=255) cgcgAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTc < 1:1472755/150‑1 (MQ=255) gcgAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCg > 2:768494/1‑150 (MQ=255) gAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGcc > 1:2289168/1‑150 (MQ=255) aTACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCA‑GAGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGTCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCAc > 1:3445552/1‑150 (MQ=255) tACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACg > 2:4203428/1‑150 (MQ=255) cGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACgat > 2:4419560/1‑150 (MQ=255) gtggtCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCA‑GGGGCCATATGGGc < 2:1716590/59‑1 (MQ=255) gtggtCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCA‑GGGGCCATATGGGc > 1:1716590/1‑59 (MQ=255) gtggtCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACgatga > 2:4014098/1‑150 (MQ=255) | CGCCGGGCAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGA > NC_002947/5899602‑5899900 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |