| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,899,769 | C→T | 7.5% | intergenic (‑191/+43) | PP_5172 ← / ← PP_5173 | hypothetical protein/RND family transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,899,769 | 0 | C | T | 7.5% | 400.5 / 17.1 | 137 | intergenic (‑191/+43) | PP_5172/PP_5173 | hypothetical protein/RND family transporter |
| Reads supporting (aligned to +/- strand): ref base C (67/56); new base T (3/7); total (73/64) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.91e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.38e-01 | |||||||||||
Only 100 of 140 total aligned reads displayed.
AGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGC > NC_002947/5899620‑5899916 | aGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGc < 1:2113502/150‑1 (MQ=255) ggggTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTAACCGCGAATACGGTGGTCGATGCACCATCGCa > 1:724371/1‑150 (MQ=255) ccggTTTTCCGCCTGGCTTGACCCAAATATTAGAGAGGCGGTATTATACTTAAAAATACTGTTTAACAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCa < 1:3491722/148‑1 (MQ=255) tttGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTcgc < 2:120130/150‑1 (MQ=255) tttGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTcgc < 1:2932741/150‑1 (MQ=255) tttGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTcgc < 2:2033380/150‑1 (MQ=255) tttGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTcgc < 2:3395870/150‑1 (MQ=255) tgtGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTcgc < 2:3280600/148‑1 (MQ=255) ttGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTcgcg < 1:3486963/150‑1 (MQ=37) ttGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGATGGTGCATCGACCACCGTATTcgcg < 2:610230/150‑1 (MQ=37) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGCgg < 1:3272683/150‑1 (MQ=25) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCgg < 1:4336135/150‑1 (MQ=255) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCgg < 1:1871881/150‑1 (MQ=255) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCgg < 1:203878/150‑1 (MQ=255) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCgg < 1:3107138/150‑1 (MQ=255) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCgg < 2:689538/150‑1 (MQ=255) tGCGCCTGGCTGGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCgg < 2:2120419/150‑1 (MQ=255) cTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTaaa < 1:24872/150‑1 (MQ=255) gCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATATGGTGGTCGATGCACCATCGCATTCGCCGGTAAAccc > 1:107310/1‑150 (MQ=255) cTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCgg < 1:1713720/141‑1 (MQ=255) ggCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTa > 2:1472755/1‑150 (MQ=255) aaTAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCa > 1:1852309/1‑150 (MQ=255) tagtagTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCA‑gg > 2:4305762/1‑150 (MQ=255) tagtagTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCAACGCATTCGCGGGTAAACCCGCTCCTACCA‑gg > 2:4305697/1‑150 (MQ=255) gtagtGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCA‑gggg > 2:2578942/1‑150 (MQ=255) gtagtGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCA‑gggg > 2:2152108/1‑150 (MQ=255) gtGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTTCCCGCGAATACGGTGGTCGATGCACCATCGCAGTAGCGGGGAAACCCGCTCCAACCA‑GGGGCCa > 1:4022140/1‑150 (MQ=255) tgcggCGGGATTATTCTTAAAAATACTGTTTAAGATTTTTTATATAACCATTTAAGAGAACAGGCCTCTGGTCGGAGCGGGTTTACCCGCGAATCGGGTGGTCGATGCACCATCGCATTCGCGGGAAAACCCGCTCCTACCA‑GGGGCCat < 2:2102865/147‑1 (MQ=38) tGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGGGTTCCCGCGCAAAAGGTGGGCGATTCACCATAGCATTCGCGGGTAAACCCGCGCCGACCACGGGGccg > 1:616753/1‑149 (MQ=255) ggCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCA‑GGGGCCATATg > 2:604301/1‑150 (MQ=255) gCGGTATTATTCTAAAAAATATTTTTTAATAATTTTTATATAACATTTTAAGAGAACACGCATCTGGTTGGAGCGGTTTTACCCGCTAATAGGGTGTTCGATGCACCATCGCATTGGCGGTTAAACCCGCTCCTACCA‑GGGGCCATATgg < 1:3295176/150‑1 (MQ=255) gCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCA‑GGGGCCATATgg < 2:3749948/150‑1 (MQ=255) gCGGGATTATTCTTAAAAATACTGTGTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCA‑GGGGCCATATgg < 2:3571966/150‑1 (MQ=255) ttAAAATTACTGTTTAAGAATTTTTATATAACAATTTAAGAGAACACGCATCTTGTAGTAGCTGGTTTAAACGATAATAAGGTGGTAGATGCACCATCGAATTCGCGGGTAAAACCGCTCGTACAA‑GGGGGCATATTGGGCTTAAGGCgt > 2:3888604/1‑150 (MQ=255) ttAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCgt < 2:3124750/150‑1 (MQ=255) ttAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCA‑GGGGCCATATGGGCCGTCAGGCgt > 1:1862343/1‑150 (MQ=255) ttAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAAAACGGTGGTCGATGCACCCTCGCATTCGCGGGTAAACCCGCACCGACCA‑GGGGCCAGATGGGCCGTCACGCgt > 2:2454633/1‑150 (MQ=38) aCTGTTTAAGAATTTTTATATAACCATTTACCAGACCACGCCTCTGGTCGGCGCGGGTTTACCCGCGAATAGGGTGGTCGATGCACAATCGCATTCGCGGTTAACCCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGc < 1:2179242/150‑1 (MQ=38) aCTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTCGGAGCGGGTTTACCCGCTAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGc < 1:330183/150‑1 (MQ=255) aCTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGc < 2:2995885/150‑1 (MQ=255) aatattttttATATAACAATTTAAGACACCACGCCTCTGGTAGGCGCGGTTTTACCCGCGAATAGGGTGGTCGATGCACCATCGCATTCGGGGGTAAACCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTcgc < 1:291630/145‑1 (MQ=38) aaTTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCAACCA‑GGGGCCCGCTGGGCCGTCAGGCGTGTTTCTGCGGCGCGCGGa > 2:2803179/1‑150 (MQ=38) tttttATATACCCATTAACGAGAACACGCCTGTGGTCGGCGCGGGTTTACCCGCTAATACGGTGGCCGATGCACCATCGCATTCGCGGTTAACCCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATc < 1:2500596/150‑1 (MQ=255) tttttATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACCGTGGTCGATGCCCCATCGCATTCGCGGGTAAACCCGCTCCTACCA‑GGGGCCATATGGGCCGTCAGGCGGGTTTCTgcggctcgcggctc > 2:513029/1‑150 (MQ=38) tatataACCATTTCAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTACACCCGCTCCTACCA‑GGGGCCAGATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGt < 2:4502601/150‑1 (MQ=255) tatataACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGt < 2:4502618/150‑1 (MQ=255) taACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATGGCATTCGCGGGTAAACCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCa < 2:2341409/150‑1 (MQ=255) taACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACCGTGGGCGATGCACCATCGCATTAGCGGGTAAAACCGCTCCTACCA‑GGGGCCATAAGGGCCGTCCGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCa > 1:4054938/1‑150 (MQ=38) cacattttAACAGACCACGCCTGTGGTTGGCGGGGGTTTACCCGCTATTACGGTGGTCTAGCCACCATCGCATGCGGGGCAAAACCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAg < 1:550739/145‑1 (MQ=255) aaCCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTTGCCGCGAATAAGGTGGTGGATGCACCATCGCATTAGCGGGTAAAACCGCTCCTACCA‑GGGGCCATATTGGCCTTCAGGGGTTTTTGTGCGGCTCGCGGATCTTTTAGCAg > 1:2632147/1‑150 (MQ=255) tttAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCCGGTAAACCCGCTCCAACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCGTGTACCAGGCCAc > 1:4066816/1‑150 (MQ=255) acccGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAgcgc < 2:2268852/147‑1 (MQ=255) cacGCCTCTGGTAGGAGCGGGTTTACCCGCGCATACGGTGGTCGGTGCACCATCGCAGTCGCGGGTAAACCCGCTCCTACCA‑GGGGCCCTATGGGCCGTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCCGGCCACGTACAGCGcc > 2:262133/1‑150 (MQ=38) cacGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCA‑GGGGCCCTCTGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCCCGTACAGCGcc > 2:262691/1‑150 (MQ=255) ctctGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCAGCGCCTTCGCGGGTAAACCCGCTCCGACCA‑GGGGCCATATGGGCCTTCAGGCGGGGTTCTGCGGCTCGCGGGTCTTGGACCCGGCCCCGTACAGCGCCGGCAg > 2:4233601/1‑150 (MQ=37) tGGTCGGTGGGGGTTTACCGGCGATTAGGGTGGACTATGCACATTCGAATCGGGGGGTAAACCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGaa < 1:3036890/150‑1 (MQ=255) tGGTAGGAGCGGGTTTACCCCCCCAAAAGGTTGTCGCTGCCCCAACGCAATAGCGGGGAAACCCGCGCCGACCC‑CGGGCCCCATGGGCCGTCAGGCGGGTTTCAGCGGCTCGCGCAACTTGTACCACGCCCCCAACAGCCCCCGCAGGaa > 2:1917501/1‑150 (MQ=255) gTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAAca < 2:2100378/150‑1 (MQ=255) aGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAAcagc < 2:1409374/150‑1 (MQ=255) cgCGGGTTTCCCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACagcagc < 2:2016223/149‑1 (MQ=255) ggTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCa > 2:2821696/1‑150 (MQ=255) ggTTGACCCGCGAATACGGTGGTCGAGGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCa < 2:114634/150‑1 (MQ=255) gTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAg > 1:3594044/1‑150 (MQ=255) gTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAg > 2:1703692/1‑150 (MQ=255) gTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAg > 2:1703626/1‑150 (MQ=255) cccGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAgg > 1:3438461/1‑150 (MQ=255) ccGCGAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCA‑GAGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 2:857671/1‑150 (MQ=25) ccGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGa > 2:2418745/1‑131 (MQ=255) ccGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGa < 1:2418745/131‑1 (MQ=255) ccGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 1:1213081/1‑150 (MQ=255) ccGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 2:3887373/1‑150 (MQ=255) ccGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 1:4090454/1‑150 (MQ=255) ccGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 1:554799/1‑150 (MQ=255) ccGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 2:1034014/1‑150 (MQ=255) ccGCGAATACGGTGGTCGATGCACCATCGAATTCGCGGGTAAACCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 2:1033848/1‑150 (MQ=255) cgcgAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTc < 1:1472755/150‑1 (MQ=255) gcgAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCg > 1:2754113/1‑150 (MQ=37) gAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGcc > 1:2289168/1‑150 (MQ=255) aTACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCA‑GAGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGTCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCAc > 1:3445552/1‑150 (MQ=255) tACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACg > 2:4203428/1‑150 (MQ=255) gtggtCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCA‑GGGGCCATATGGGc < 2:1716590/59‑1 (MQ=255) gtggtCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCA‑GGGGCCATATGGGc > 1:1716590/1‑59 (MQ=255) gtggtCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACgatga > 2:4014098/1‑150 (MQ=255) tggtCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACgatgat > 2:1588451/1‑150 (MQ=255) tggtCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACgatgat > 2:2017636/1‑150 (MQ=255) gtCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATcc > 1:3683017/1‑150 (MQ=255) gctGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGc < 1:4266731/148‑1 (MQ=255) aTGCACCATCGCATTCGGGGGTAAACCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGcc < 1:3206522/150‑1 (MQ=255) tGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGTGTCAGCAAGGTCGCCACGATGATCCCGCCa > 1:941817/1‑150 (MQ=255) aCCATCGCATTCGCGGGTAAACCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATc > 1:1415984/1‑150 (MQ=255) cATCGCATTCGCGGGTAAACCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCAt > 2:4229201/1‑150 (MQ=255) aTCGCATTCGCGGTTAAACCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATg < 1:1379252/150‑1 (MQ=255) aTCGCATTCGCGGGTAAACCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATg < 2:1852309/150‑1 (MQ=255) aTCGCATTCGCGGGTAAACCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATg < 2:724371/150‑1 (MQ=255) tCGCATTCGCGGGTAAACCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCg < 1:230464/99‑1 (MQ=255) tCGCATTCGCGGGTAAACCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCg > 2:230464/1‑99 (MQ=255) tCGCATTCGCGGGTAAACCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATgg > 2:3710539/1‑150 (MQ=255) tCGCATTCGCGGGTAAACCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATgg > 2:70083/1‑150 (MQ=255) cGCATTCGCGGGTAAACCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGc < 1:4404508/150‑1 (MQ=255) cATTCGCGGGTAAACCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAg < 2:770941/100‑1 (MQ=255) | AGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGC > NC_002947/5899620‑5899916 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |