| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,905,143 | A→C | 18.3% | intergenic (‑129/‑139) | PP_5175 ← / → PP_5176 | HlyD family secretion protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,905,143 | 0 | A | C | 18.3% | 325.4 / 57.1 | 178 | intergenic (‑129/‑139) | PP_5175/PP_5176 | HlyD family secretion protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (48/88); new base C (19/14); total (74/104) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.82e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.26e-01 | |||||||||||
Only 100 of 180 total aligned reads displayed.
CAGCGGACGCATCAACGCCATGCTGGCTCCTTGCTTGTGCACAAATGATTTGTGGGATGCGACTGTGAGCGTAGTTCAGGGTTCGATAAACATCACTGACGGGGGCCATGCTGGCATTTTTGGTGCCTGCGGGGGCCTCTTCGCGGGCGAGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCC‑AGAAACCATCAGGCATCGGCCATCCCCGTTCCAACCGCTACCTTTCACAGGGAGGCTCACATTCAAGGAAGATCAAAATGCCGTTAGCCGAATGCCACCGA > NC_002947/5904994‑5905291 | cAGCGGACGCATCAACGCCATGCTGGCTCCTTGCTTGTGCACAAATGATTTGTGGGATGCGACTGTGAGCGTAGTTCAGGGTTCGATAAACATCACTGACGGGGGCCATGCTGGCATTTTTGGTGCCTGCGGGGGCCTCTTCGCGGGCGa < 1:2943086/150‑1 (MQ=255) cgCGGACGCATCAACGCCATGCTGGCTCCTTGCTTGTGCACAAATGATTTGTGGGATGCGACTGTGAGCGTAGTTCAGGGTTCGATAAACATCACTGACGGGGGCCATGCTGGCATTTTTGGTGCCTGCGGGGGCCTCTTCGCGGGCGAg < 2:1853254/149‑1 (MQ=255) gCGGACGCATCAACGCCATGCTGGCTCCTTGCTTGTGCACAAATGATTTGTGGGATGCGACTGTGAGCGTAGTTCAGGGTTCGATAAACATCACTGACGGGGGCCATGCTGGCATTTTTGGTGCCTGCGGGGGCCGCTTCGCGGgcgcgc > 2:617628/1‑150 (MQ=255) cGGACGCATCAACGCCTTGCTGGCTCCTTGCTTGTGCACAAATGATTTGTGGGATGCGACTGTGAGCGTAGTTCAGGGTTCGATAAACATCACTGACGGGGGCCATGCTGGCATTTTTGGTGCCTGCGGGGGCCTCTTCGCGGGCGAGcc > 2:1094948/1‑150 (MQ=255) gCATCAACGCCATGCTGGCTCCTTGCTTGTGCACAAATGATTTGTGGGATGCGACTGTGAGCGTAGTTCAGGGTTCGATAAACATCACTGACGGGGGCCATGCTGGCATTTTTGGTGCCTGCGGGGGCCTCTTCGCGGGCGAGCCCGCGa > 2:1753045/1‑150 (MQ=255) cATCAACGCCATGCTGGCTCCTTGCTTGTGCACAAATGATTTGTGGGATGCGACTGTGAGCGTAGTTCAGGGTTCGATAAACATCACTGACGGGGGCCATGCTGGCATTTTTGGTGCCTGCGGGGGCCTCTTCGCGGGCGAGCCCGCGaa < 2:1062755/150‑1 (MQ=255) tCAACGCCATGCTGGCTCCTTGCTTGTGCACAAATGATTTGTGGGATGCGACTGTGAGCGTAGTTCAGGGTTCTATAAACATCACTGACGGGGGCCATGCTGGCATTTTTGGTGCCTGCGGGGGCCTCTTGGCGGGCGGGCCcgcccaaa > 1:1930858/1‑145 (MQ=255) tCAACGCCATGCTGGCTCCTTGCTTGTGCACAAATGATTTGTGGGATGCGACTGTGAGCGTAGTTCAGGGTTCGATAAACATCACTGACGGGGGCCATGCTGGCATTTTTGGTGCCTGCGGGGGCCTCTTCGCGGGCTCGCCCGCGAaga < 2:2857274/150‑1 (MQ=255) tCAACGCCATGCTGGCTCCTTGCTTGTGCACAAATGATTTGTGGGATGCGACTGTGAGCGTAGTTCAGGGTTCGATAAACATCACTGACGGGGGCCATGCTGGCATTTTTGGTGCCTGCGGGGGCCTCTTCGCGGGCGAGCCCGCGAaga < 1:1250479/150‑1 (MQ=255) tCAACGCCATGCTGGCTCCTTGCTTGTGCACAAATGATTTGTGGGATGCGACTGTGAGCGTAGTTCAGGGTTCGATAAACATCACTGACGGGGGCCATGCTGGCATTTTTGGTGCCTGCGGGGGCCTCTTCGCGGGCGAGCCCGCGAaga < 2:4505701/150‑1 (MQ=255) tCAACGCCATGCTGGCTCCTTGCTTGTGCACAAATGATTTGTGGGATGCGACTGTGAGCGTAGTTCAGGGTTCGATAAACATCACTGACGGGGGCCATGCTGGCATTTTTGGTGCCTGCGGGGGCCTCGTCGCGGGCGAGCCCGCGCaga > 2:942903/1‑150 (MQ=255) tCAACGCCATGCTGGCTCCTTGCTTGTGCACAAATGATTTGTGGGATGCGACTGTGAGCGTAGTTCAGGGTTCGATAAACATCACTGACGGGGGCCATGCTGGCATTTTTGGTGCCTGCGGAGGCCTCTTCGCGGGCTCGCCCGCGAaga < 2:867714/150‑1 (MQ=255) tCAACGCCATGCTGGCTCCTTGCTTGTGCACAAATGATTTGTGGGATGCGACTGTGAGCGTAGTTCAGGGTTCGATAAACATCACTGACGGGGGCCATGCTGGCATTTTTGGTGCCAGCGGGGGCCTCATAGCGGGCGGGCCCCCGAaga > 1:3937337/1‑150 (MQ=255) tCAACGCCATGCTGGCTCCTTGCTTGTGCACAAATGATTTGTGGGATGCGACTGTGAGCGTAGTTCAGGGTTCGATAAACATCACTGACGGGGGCCATGCTGGCAGTTTTGGTGCCTGCGGGGGCCTCTTCGCGGGCGAGCCCGCGAaga > 2:4441780/1‑150 (MQ=255) tCAACGCCATGCTGGCTCCTTGCTTGTGCACAAATGATTTGTGGGATGCGACTGTGAGCGTAGTTCAGGGTTCGATAAACAGCACTGACGGGGGCCATGCTGGCATTTTTGGTGCCTGCGGGGGCCTCTTCGCGGGCTCGCCCGCGAaga < 1:82772/150‑1 (MQ=255) tCAACGCCATGCTGGCTCCTTGCTTGTGCACAAATGATGTGTGGGATGCGACTGTGAGCGTAGTTCAGGGTTCGATAAACATCACTGACGGGGGCCATGCTGGCATTTTTGGTGCCTGCGGGGGCCTCTTCGCGGGCTCGCCCGCGAaga < 2:2124808/150‑1 (MQ=255) cAACGCCCTGCTGGGTCCTTGCTTGTGCACAAATGTTTTGTGGGATGCGACTGTGAGCTTAGTTCAGGGTTCGATAAACATCACTGACGGGGGCCATGCTGGCATTTTTGGTGCCTGCGGGGGCCTCTTCGCGGGCGAGCCCGCGAagag < 2:1930858/150‑1 (MQ=255) cAACGCCATGCTGGCTCCTTGCTTGTGCACAAATGATTTGTGGGATGCGACTGTGAGCGTAGTTCAGGGTTCGATAAACATCACTGACGGGGGCCATGCTGGCATTTTTGGTGCCTGCGGGGGCCTCTTCGCGGGCGAGCCCGCGAagag > 1:2924282/1‑150 (MQ=255) gCCATGCTGGCTCCTTGCTTGTGCACAAATGATTTGTGGGATGCGACTGTGAGCGTAGTTCAGGGTTCGATAAACATCACTGACGGGGGCCATGCTGGCATTTTTGGTGCCTGCGGGGGCCTCTTCGCGGGCGAGCCCGCGAAGAGGCCt > 1:4501509/1‑150 (MQ=255) cATGCTGGCTCCTTGCTTGTGCACAAATGATTTGTGGGATGCGACTGTGAGCGTAGTTCAGGGTTCGATAAACATCACTGACGGGGGCCATGCTGGCATTTTTGGTGCCTGCGGGGGCCTCTTCGCGGGCGAGCCCGCGAAGAGGCCTcc > 2:314220/1‑150 (MQ=255) cATGCTGGCTCCTTGCTTGTGCACAAATGATTTGTGGGATGCGACTGTGAGCGTAGTTCAGGGTTCGATAAACATCACTGACGGGGGCCATGCTGGCATTTTTGGTGCCTGCGGGGGCCTCTTCGCGGGCGAGCCCGCGAAGAGGCCTcc < 2:4277413/150‑1 (MQ=255) cTGGCTCCTTGCTTGTGCACAAATGAATTGTGGGAAGCGACTGTGAGCGTAGTTCAGGGTTCGAGAAACATCACTGACGGGGGCCATGCTGGCATTTTTGGTGCCTGCGGGGGCCTATTCCGGGGCGCGCCCGCGACCAGGCCAcccccc > 1:2789568/1‑146 (MQ=255) tGGCTCCTTGCTTGTGCACAAATGATTTGTGGGATGCGACTGTGAGCGTAGTTCAGGGTTCGATAAACATCACTGACGGGGGCCATGCTGGCATTTTTGGTGCCTGCGGGGGCCTCTTAGCGGGCGAGCCCGCCAAGAGGCCAAcacacc > 1:3299373/1‑148 (MQ=255) ggCTCCTTGCTTGTGCACAAATGATTTGTGGGATGCGACTGTGAGCGTAGTTCAGGGTTCGATAAACATCACTGACGGGGGCCATGCTGGCATTTTTGGTGCCTGCGGGGGCCTCGAAGCGGGCGCGCCCCCCAAGACGCCGCcaccccc > 1:2365349/1‑146 (MQ=255) ggCTCCTTGCTTGTGCACAAATGATTTGTGGGATGCGACTGTGAGCGTAGTTCAGGGTTCGATAAACATCACTGACGGGGGCCATGCTGGCATTTTTGGTGCCTGCGGGGGCCTCATCGCGGGCGAGCCCGCGAAGAGGCCTCCACAGcc > 2:3229629/1‑150 (MQ=255) ggCTCCTTGCTGGTGCACAATTGATTTGTGGGATGCGCCTGTGAGCGTCGTACCGGGTTCGACAAACATCTCTTCCGGGGGCCATGCTGGATCTTTTGCGGCGTGCGGGGGCCTGTTCGGGGGCGAGCCCGCGAAGAGGCCTCCTCAGcc < 2:3185689/150‑1 (MQ=255) gCTCCTTGCTTGTGCACAAATGATTTGTGGGATGCGACTGTGAGCGTAGTTCAGGGTTCGATAAACATCACTGACGGGGGCCATGCTGGCATTTTTGGTGCCTGCGGGGGCCTCTTCGCGGGCGAGCCCGCGAAGAGGCCTCCACAGCCa < 2:2446689/150‑1 (MQ=255) ccTTGCTTGTGCACAATTTATTTGTGGGTTGCGCCTGTGAGCGTAGTTCTGGGTTCGATAAACATCAGTGACGGGGGCCAGGGTGGCATTTTTGGGGCCTGCGGGGGCCTCTTGGGGGGCGAGCCCGCGAAGAGGCCTCCACAGCCATGt < 1:3555614/150‑1 (MQ=255) gcttgTGCACAAATGATTTGTGGGATGCGACTGTGCGCGTAGTTCAGGGTGCGATAAACAACACTGACGGGGGCCATGCTGGCATTTTTGGTGCCTGCGGGGGCCTCTTGGCGGGCGAGCCCGCGAAGAGGCCTCCACAGCCATGTATCa < 1:1061784/150‑1 (MQ=255) gcttgTGCACAAATGATTTGTGGGATGCGACTGTGAGCGTAGTTCAGGGTTCGATAAACATCACTGCCGGGGGCCATGCTGGCATTTTTGGTGCCTGCGGGGGCCTCTTCGCGGGCGAGCCCGCGAAGAGGCCTCCACAGCCATGTATCa < 2:2647497/150‑1 (MQ=255) gcttgTGCACAAATGATTTGTGGGATGCGACTGTGAGCGTAGTTCAGGGTTCGATAAACATCACTGACGGGGGCCATGCTGGCATTTTTGGTGCCTGCGGGGGCCTCTTCGCGGGCGAGCCCGCGAAGAGGCCTCCACAGCCATGTATCa < 2:2550480/150‑1 (MQ=255) gcttgTGCACAAATGATTGGTGGGATGCGACTGTGAGCGTAGTTCAGGGTTCGATAACCATCACTGACGGGGGCCATGCTGGCATTTTTGGTGCCTGCGGGGGCCTCTTCGCGGGCGAGCCCGCGAAGAGGCCTCCACAGCCATGTATCa < 2:2849147/150‑1 (MQ=255) acaAATGATTTGTGGGATGCGACTGTGAGCGTAGTTCAGGGTTCGATAAACATCACTGACGGGGGCCATGCTGGCATTTTTGGTGCCTGCGGGGGCCTCATCCCGGGCGAGCCCGCCAAGACGCCTCCACAGCCAAGTATCAATaaaagc > 2:960981/1‑145 (MQ=255) caATTGTTTGGTGGTATGCGACGGTGAGCGTTGTTCCGGGTTCGATAACCATCAGTGCCGGGGGCCATGCTGGCATTTTTGGTGCCTGCGGGGGCCTCTTCGCGGGCGCGCCCGCGACGAGGCCTCCACAGCCATGTATCAGTATCTGcc < 1:3615195/150‑1 (MQ=255) caAATGATTGGTGGGATGCGACTGTGAGCGTAGTTCAGGGTTCGATAAACATCACTGACGGGGGCCATGCTGGCATTTTTGGTGCCTGCGGGGGCCTCTTCGCGGGCGAGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGcc < 2:1063087/150‑1 (MQ=255) tttGTGGGATGCGACTGTGAGCGTAGTTCAGGGTTCGATAAACATCACTGACGGGGGCCATGCTGGCATTTTTGGTGCCTGCGGGGGCCTCTTCGCGGGCGCGCCCCCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCAAATAC‑a > 1:4137452/1‑150 (MQ=255) tttGTGGGATGCGACTGTGAGCGTAGTTCAGGGTTCGATAAACATCACTGACGGGGGCCATGCTGGCATTTTTGGTGCCTGCGGGGGCCTCTTAGCGGGCGAGCCCGCGAAGAGGCCTCCACAGCCATGTATAAGTATCTGCCATATAC‑a > 2:1775276/1‑150 (MQ=255) ggATGCGACTGTGAGCGTAGTTCAGGGTTCGATAAACATCACTGACGGGGGCCATGCTGGCATTTTTGGTGCCTGCGGGGGCCTCTTCGCGGGCGAGCCCGCGAAGAGGCCTCCACAGCCAAGTATCAGTATCTGCCCTATAC‑AGaaaac > 2:2863509/1‑148 (MQ=255) gATGCGACTGTGAGCGTAGTTCAGGGTTCGATAAACATCACTGACGGGGGCCATGCTGGCATTTTTGGTGCCTGCGGGGGCCACATCGCGGGCGAGCCCCCGAACAGGCCTCCACAGCCAAGTATCAGTATCTGCCCAATAC‑AGAAAACa > 2:1827783/1‑150 (MQ=255) tGCGACTGTGTGCGTTGTTCAGGGTTCGATAAACATCACTGACGGGGGCCTTGCTGGCATTTTTGGTGCCTGCGGGGGCCTCTTCGCGGGCGAGCCCGCGATGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCC‑AGAAACCATc < 1:1411166/150‑1 (MQ=255) gCGACTGTGTGCTTTTTTCAGGGTTCTTTAAACATCAGTTACGGGGGCCTTGCTGGAATTTTTGTTGCCTGCGGGGGCCTCTTCGGGGGCGAGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCC‑AGAAACCATCa < 1:990064/150‑1 (MQ=255) gCGACTGTGAGCGTAGTTCAGGGTTCGATAAACATCACTGACGGGGGCCATGCTGGCATTTTTGGGGCCTGCGGGGGCCTCTTCGCGGGCGAGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCC‑AGAAACCATCa < 1:1439726/150‑1 (MQ=255) gACTGTGAGCGTAGTTCAGGGTTCGATAAACATCACTGACGGGGGCCATGCTGGCATTTTTGGTGCCTGCGGGGGCCTCTTCGCGGGCGTGCCCGCGAAGAGGCCTCCACAGCCAAGTATCAGTATATTCCAAATAC‑AGAAAACATCacg > 1:3374461/1‑148 (MQ=255) tgtgAGCGTAGTTCAGGGTTCGATAAACATCACTGACGGGGGCCATGCTGGCATTTTTGGTGCCTGCGGGGGCCTCTTCGCGGGCGAGCCCCCGAAGAGGCCTCCACAGCCATGTATCACTATCTGCCATATCC‑ACAAACCAACAGGccg > 2:2780089/1‑148 (MQ=255) tgAGCGTTGTTCAGGGTTCGATAAACATCACTGACGGGGGCCATGCTGGCATTTTTGGTGCCTGCGGGGGCCTCTTCGCGGGCGAGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCC‑AGAAACCATCAGGCATCg < 1:3359204/150‑1 (MQ=255) taGCTTAGTTCAGGGTTCGATAAACATCACTGCCGGGGGCCATGCTGGCATTTTTGGTGCCTGCGGGGGCCTCTTCGCGGGCGAGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCC‑AGAAACCATCAGGCATCgg < 2:551938/149‑1 (MQ=255) gtggttAGTTCTGGTTTCGATAAACATACGTGAGGGGGGCCTTGGTGTCTTTTTTGGGGCGTGGGGGGGCCTCTTGGCGGGCGCGCCCGCTAAGAGGCCTCCTCAGCCATGTATCAGTATCTGCCATATCC‑AGAAACCATCAGGCATCgg < 1:908684/145‑1 (MQ=255) gAGCGTAGTTCAGGGTTCGATAAACATCACTGACGGGGGCCATGCTGGCATTTTTGGTGCCTGCGGGGGCCTCTTCGCGGGCGAGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATATGCCATATCC‑CGAAACCATCACGCATCgg > 2:3573729/1‑150 (MQ=255) gttgTTCTGGGTTCGATAAACATCACTGCGGGGGGCCTTGCTGGATTTTTTGGGGCCTGGGGGGGCCTCTTGGGGGGCGAGCCGGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCC‑AGAAACCATCAGGCATCGGCCAt < 1:92639/147‑1 (MQ=255) aGTTCAGGGTTCGATAAACATCACTGACGGGGGCCATGCTGGCATTTTTGGTGCCTGCGGGGGCCTCTTCGCGGGCGAGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCC‑AGAAACCATCAGGCATCGGCCATcc < 2:4080428/150‑1 (MQ=255) ttCAGGGTTCGATAAACATCACTGACGGGGGCCATGCTGGCATTTTTGGTGCCTGCGGGGGCCTCTTAGCGGGCGAGCCCCCGAAGAGGCCGCCACCCCCCAGTATCAGTAAATTACAAAAAC‑AGAAAACAAAAGGCATCGGCCaaaccc > 2:1148473/1‑145 (MQ=255) ttCAGGGTTCGATAAACATCACTGACGGGGGCCATGCTGGCATTTTTGGTGCCTGCGGGGGCCTCTTAGCCGGCGAGCCCCCGAAGATGCCTCCACAGCCAAGTATCAGTATCAGCCAAATAC‑AGAAACCATCAGGCAACGGCCATcccc > 2:4465878/1‑150 (MQ=255) cgggTTCGATAAACATCACTGACGGGGGCCATGGTGGCATTTTTGGTGCCTGCGGGGGCCCCTTCGCGGGCGCGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCC‑AGAAACCATCAGGCATCGGCCATCCCCGtt < 1:87682/149‑1 (MQ=255) ggTTCGATAAACATCACTGACGGGGGCCATGGTGGCATTTTTGGTGCCTGCGGGGGCCTCTTCGCGGGCGAGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCC‑AGAAACCATCAGGCATCGGCCATCCCCGTTcc < 1:2176432/150‑1 (MQ=255) ggTTCGATAAACATCACTGACGGGGGCCATGCTGGCATTTTTGGTGCCTGCGGGGGCCTCGTAGCGGGCGAGCCCGCCAACAGGCCGCCACACCCAAGTATAACTATCTGCCAAATAC‑ACAAAACAACAGGCAAAGGCCAAcccccgtcc > 2:1496757/1‑145 (MQ=255) cGATAAACATCACTGACGGGGGCCATGCTGGCATTTTTGGTGCCTGCGGGGGCCTCTTCGCGGGCGAGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCC‑AGAAACCATCAGGCATCGGCCATCCCCGTTCCAAcc < 1:2200980/150‑1 (MQ=255) tCACTGACGGGGGCCATGCTGGAATTTTTGGTGCCTGCGGGGGCCTCTTCGCGGGCGAGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCC‑AGAAACCATCAGGCATCGGCCATCCCCGTTCCAACCGCTACCttt < 1:3217022/150‑1 (MQ=255) aCTGACGGGGGCCATGCTGGCTTTTTTGGTGCCTGCGGGGGCCTCTTCGCGGGCGAGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCC‑AGAAACCATCAGGCATCGGCCATCCCCGTTCCAACCGCTACCTTTca < 2:1652047/150‑1 (MQ=255) tGACGGGGGCCATGCTGGCAGTTTTGGTGCCTGCGGGGGCCTCTTCGCGGGCGGGCCCGCGAAGAGGCCTCCACCGCCCTGTATCAGTATCTGCCCTATCC‑AGAAACCATCAGGCAGCGGCCCTCCCCGTTCCCACCGCTACCGTTcccc > 2:1761159/1‑147 (MQ=255) gggggCCATGCTGGCATTTTTGGTGCCTGCGGGGGCCTCTTCGCGGGCGAGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCC‑AGAAACCATCAGGCATCGGCCATCCCCGTTCCAACCGCTACCTTTCACAGGGa < 2:4196789/150‑1 (MQ=255) gggCCATGCTGGCATTTTTGGTGCCTGCGGGGGCCTCTTCGCGGGCGAGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCC‑AGAAACCATCAGGCATCGGCCATCCCCGTTCCAACCGCTACCTTTCACAGGGAgg < 2:4354956/150‑1 (MQ=255) gggCCATGCTGGCATTTTTGGTGCCTGCGGGGGCCTCTTCGCGGGCGAGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCC‑AGAAACCATCAGGCATCGGCCATCCCCGTTCCAACCGCTACCTTTCACAGGGAgg < 1:1434792/150‑1 (MQ=255) gtccATGCTGGCATTTTTGGTTCCTGCGGGGGACTCTTCGCGGGCGAGCCCGCGAATAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCC‑AGAAACCATCAGGCATCGGCCATCCCCGTTCCAACCGCTACCTTTCACAGGGAGGc < 2:142062/148‑1 (MQ=255) ggCCATGCTGGCATTTTTGGTGCCTGCGGGGGCCTCATAGCGGGCGAGCCCCCGAAGAGGCCTCCACAGCCAAGTATCAGTATATGCCAAATAC‑ACAAAACATCACGCATCGGCCAACCCCCGTCCAAACCCTACCATTAACAAGGAGGc > 1:3750677/1‑150 (MQ=255) ggCATTTTTGGTGCCTGCGGGGGCCTAATGCCGGGCCCGCCCCCGAAGAGGCCACCACATCCAAGTATCAATATAAGCCAAAACCAAAAAACAAAAAGGCAAC‑GCCAACCCCCGTGCAAACACAAACATTCACAAGGAGGGTcacaataa > 2:3111149/1‑146 (MQ=255) gCATTTTTGGTGCCTGCGGGGGCCTCTTCGCGGGCGAGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCC‑AGAAACCATCAGGCATCGGCCATCCCCGTTCCAACCGCTACCTTTCACAGGGAGGCTCACATTCaa < 2:385011/150‑1 (MQ=255) gCATTTTTGGTGCCTGCGGGGGCCTCTTCGCGGGCGAGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCC‑AGAAACCATCAGGCATCGGCCATCCCCGTTCCAACCGCTACCTTTCACAGGGAGGCTCACATTCaa < 1:1022008/150‑1 (MQ=255) gCATTTTTGGTGCCTGCGGGGGCCTCTTCGCGGGCGAGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCC‑AGAAACCATCAGGCATCGGCCATCCCCGTTCCAACCGCTACCTTTCACAGGGAGGCTCACATTCaa < 1:4493832/150‑1 (MQ=255) gCATTTTTGGTGCCTGCGGGGGCCTCTTCGCGGGCGAGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCC‑AGAAACCATCAGGCATCGGCCATCCCCGTTCCAACCGCTACCTTTCACAGGGAGGCTCACATTCaa < 1:2377365/150‑1 (MQ=255) gCATTTTTGGTGCCTGCGGGGGCCTCTTCGCGGGCGAGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCC‑AGAAACCATCAGGCATCGGCCATCCCCGTTCCAACCGCTACCTTTCACAGGGAGGCTCACATTCaa < 1:2998757/150‑1 (MQ=255) gCATTTTTGGTGCCTGCGGGGGCCTCTTCGCGGGCGAGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCC‑AGAAACCATCAGGCATCGGCCATCCCCGTTCCAACCGCTACCTTTCACAGGGAGGCTCACATTCaa < 2:1278754/150‑1 (MQ=255) gCATTTTTGGTGCCTGCGGGGGCCTCTTAGCGGGCGATCCCGCGAAGAGGCCTCCACACCCATGTTAAAGGATATTCCATATAC‑AGAAACCATCAGGCAACGGCCCTCCCCCGTACAACCGCTACCATTAACACTGAGGCGAACAtgaaa > 2:4224084/1‑146 (MQ=255) gCATTTTTGGTGCCGGCGGGGGCCTCTCCGCGGGCGAGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCC‑AGAAACCATCAGGCATCGGCCATCCCCGTTCCAACCGCTACCTTTCACAGGGAGGCTCACATTCaa < 1:2046560/150‑1 (MQ=255) ttttGGTGCCTGCGGGGGCCTCTTCGCGGGCGAGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCC‑AGAAACCATCAGGCATCGGCCATCCCCGTTCCAACCGCTACCTTTCACAGGGAGGCTCACATTCAAGGaa < 1:1927483/150‑1 (MQ=255) ttttGGTGCCTGCGGGGGCCTCTTCGCGGGCGAGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCC‑AGAAACCATCAGGCATCGGCCATCCCCGTTCCAACCGCTACCTTTCACAGGGAGGCTCACATTCAAGGaa < 2:633882/150‑1 (MQ=255) ttttGGTGCCTGCGGGGCCCTCTGCGCGGCCGAGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCC‑AGAAACCATCAGGCATCGGCCATCCCCGTTCCAACCGCTACCTTTCACAGGGAGGCTCACATTCAAGGaa < 1:3919144/150‑1 (MQ=255) ttGGTGCCTGGGGGGGCCTGTTCGGGGGCGTGCCCGGGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCC‑AGAAACCATCAGGCATCGGCCATCCCCGTTCCAACCGCTACCTTTCACAGGGAGGCTCACATTCAAGGAAGa < 1:2717964/150‑1 (MQ=255) ttGGTGCCTGCGGGGGCCTCTTCGCGGGCGAGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCC‑AGAAACCATCAGGCATCGGCCATCCCCGTTCCAACCGCTACCTTTCACAGGGAGGCTCACATTCAAGGAAGa < 2:1160091/150‑1 (MQ=255) ccTGCGGGGGCCTCTTCGCGGGCGAGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCC‑AGAAACCATCAGGCATCGGCCATCCCCGTTCCAACCGCTACCTTTCACAGGGAGGCTCACATTCAAGGAAGATCaaaa < 1:3122643/150‑1 (MQ=255) gggggggCCTCTTCGGGGGCGAGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCC‑AGAAACCATCAGGCATCGGCCATCCCCGTTCCAACCGCTACCTTTCACAGGGAGGCTCACATTCAAGGAAGATCAAAATGc < 1:865121/148‑1 (MQ=255) gCGGGGGCCTCTTCGCGGGCGAGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCC‑AGAAACCATCAGGCATCGGCCATCCCCGTTCCAACCGCTACCTTTCACAGGGAGGCTCACATTCAAGGAAGATCAAAATGc < 1:1473924/150‑1 (MQ=255) cGGGGGCCTCTTCGCGGGCGAGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCAGATCC‑AGAAACCATCAGGCATCGGCCATCCCCGTTCCAACCGCTACCTTTCACAGGGAGGCTCACATTCAAGGAAGATCAAAATGcc < 1:1761159/150‑1 (MQ=255) ggCCTCTTCGCGGGCGAGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCC‑AGAAACCATCAGGCATCGGCCATCCCCGTTCCAACCGCTACCTTTCACAGGGAGGCTCACATTCAAGGAAGATCAAAATGCCGTTa < 2:4417403/150‑1 (MQ=255) ccTCTTCGCGGGCTCACCCGCGAAGAGGCCCCCACAGCCATGTATCAGTATCTGCCATATCC‑AGAAACCATCAGGCATCGGCCATCCCCGTTCCAACCGCTACCTTTCACAGGGAGGCTCACATTCAAGGAAGATCAAAATGCCGTTAGc > 2:3239072/1‑150 (MQ=255) ctctTCGCGGGCTCGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCC‑AGAAACCATCAGGCATCGGCCATCCCCGTTCCAACCGCTACCTTTCACAGGGAGGCTCACATTCAAGGAAGATCAAAATGCCGTTAGcc > 1:469456/1‑150 (MQ=255) ctctTCGCGGGCGAGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCC‑AGAAACCATCAGGCATCGGCCATCCCCGTTCCAACCGCTACCTTTCACAGGGAGGCTCACATTCAAGGAAGATCAAAATGCCGTTAGcc > 2:1764438/1‑150 (MQ=255) tctTCGCGGGCTCGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCC‑ATAAACCATCAGGCATCGGCCATCCCCGTTCCAACCGCTACCTTTCACAGGGAGGCTCACATTCAAGGAAGATCAAAATGCCGTTAGCCg > 1:733296/1‑150 (MQ=255) tctTCGCGGGCTCGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCC‑AGAAACCATCAGGCATCGGCCATCCCCGTTCCAACCGCTACCTTTCACAGGGAGGCTCACATTCAAGGAAGATCAAAATGCCGTTAGCCg > 1:2891133/1‑150 (MQ=255) tctTCGCGGGCGAGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCC‑AGAAACCATCAGGCATCGGCCATCCCCGTTCCAACCGCTACCTTTCACAGGGAGGCTCACATTCAAGGAAGATCAAAATGCCGTTAGCCg > 1:4214205/1‑150 (MQ=255) tctTCGCGGGCGAGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCC‑AGAAACCATCAGGCATCGGCCATCCCCGTTCCAACCGCTACCTTTCACAGGGAGGCTCACATTCAAGGAAGATCAAAATGCCGTTAGCCg > 1:3450158/1‑150 (MQ=255) tctTCGCGGGCGAGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCC‑AGAAACCATCAGGCATCGGCCATCCCCGTTCCAACCGCTACCTTTCACAGGGAGGCTCACATTCAAGGAAGATCAAAATGCCGTTAGCCg > 1:1846900/1‑150 (MQ=255) ctTCGCGGGCGAGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCC‑AGAAACCATCAGGCATCGGCCATCCCCGTTCCAACCGCTACCTTTCACAGGGAGGCTCACATTCAAGGAAGATCAAAATGCCGTTAGCCGa > 1:3950445/1‑150 (MQ=255) ttCGCGGGCTCGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCC‑AGAAACCATCAGGCATCGGCCATCCCCGTTCCAACCGCTACCTTTCACAGGGAGGCTCACATTCAAGGAAGATCAAAATGCCGTTAGCCGaa > 2:204165/1‑150 (MQ=255) ttCGCGGGCGAGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCC‑AGAAACCATCAGGCATCGGCCATCCCCGTTCCAACCGCTACCTTTCACAGGGAGGCTCACATTCAAGGAAGATCAAAATGCCGTTAGCCGaa > 1:4028496/1‑150 (MQ=255) ttCGCGGGCGAGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCC‑AGAAACCATCAGGCATCGGCCATCCCCGTTCCAACCGCTACCTTTCACAGGGAGGCTCACATTCAAGGAAGATCAAAATGCCGTTAGCCGaa < 1:4441780/150‑1 (MQ=255) tCGCGGGCTCGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCC‑AGAAACCATCAGGCATCGGCCATCCCCGTTCCAACCGCTACCTTTCACAggg < 2:1223902/109‑1 (MQ=255) tCGCGGGCTCGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCC‑AGAAACCATCAGGCATCGGCCATCCCCGTTCCAACCGCTACCTTTCACAggg > 1:1223902/1‑109 (MQ=255) tCGCGGGCTCGCCCGCGAAGAGGCCCCCACAGCCATGTATCAGTATCTGCCATATCC‑AGAAACCATCAGGCATCGGCCATCCCCGTTCCAACCGCTACCTTTCACAGGGAGGCTCACATTCAAGGACGATCAAAATGCCGTTAGCCGAAt > 2:2479056/1‑150 (MQ=255) cgGGCGAGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCC‑AGAAACCATCAGGCATCGGCCATCCCCGTTCCAACCGCTACCTTTCACAGGGAGGCTCACATTCAAGGAAGATCAAAATGCCGTTAGCCGAATGcc < 1:3526336/150‑1 (MQ=255) gAGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCC‑AGAAACCATCAGGCATCGGCCATCCCCGTTCCAACCGCTACCTTTCACAGGGAGGCTCACATTCAAGGAAGATCAAAATGCCGTTAGCCGAATGCCACCGa > 2:4210520/1‑150 (MQ=255) | CAGCGGACGCATCAACGCCATGCTGGCTCCTTGCTTGTGCACAAATGATTTGTGGGATGCGACTGTGAGCGTAGTTCAGGGTTCGATAAACATCACTGACGGGGGCCATGCTGGCATTTTTGGTGCCTGCGGGGGCCTCTTCGCGGGCGAGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCC‑AGAAACCATCAGGCATCGGCCATCCCCGTTCCAACCGCTACCTTTCACAGGGAGGCTCACATTCAAGGAAGATCAAAATGCCGTTAGCCGAATGCCACCGA > NC_002947/5904994‑5905291 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |