| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 697,105 | A→C | 7.7% | intergenic (+29/‑722) | mmsA‑I → / → PP_16SD | methylmalonate‑semialdehyde dehydrogenase/16S ribosomal RNA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 697,105 | 0 | A | C | 7.7% | 419.4 / 10.7 | 150 | intergenic (+29/‑722) | mmsA‑I/PP_16SD | methylmalonate‑semialdehyde dehydrogenase/16S ribosomal RNA |
| Reads supporting (aligned to +/- strand): ref base A (67/65); new base C (4/10); total (71/79) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.60e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 150 total aligned reads displayed.
GACCTGCATGCCTATGGCCCGGATGGTGTGCGCTTCTATACCCGTCGCAAGGCCATTACCCAGCGTTGGCCGCAGCGGGCCAGCCATGAAGCGTCGCAGTTTGCATTCCCTAGCCTGTAAGGGAAGTAGATGAAGCGGGGAGGCCGTCAGGCCTCCCCGCTTTGTTTTTGGGGGTTGGTTGTTGCTGTTGGGGAGGAACTGTTTTGAGAGGGTGTTGGCTGTGAGATGTGTCCGCCACAACCCTTGCAGTGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGGTCTCACAGG > NC_002947/696957‑697251 | gACCTGCATGCCTATGGCCCGGATGGTGTGCGCTTCTATACCCGTCGCAAGGCCATTACCCAGCGTTGGCCGCAGCGGGCCAGCCATGAAGCGTCGCAGTTTGCATTCCCTAGCCTGTAAGGGAAGTAGATGAAGCGGGGAGGCCGTCAg < 1:3208744/150‑1 (MQ=255)gACCTGCATGCCTATGGCCCGGATGGTGTGCGCTTCTATACCCGTCGCAAGGCCATTACCCAGCGTTGGCCGCAGCGGGCCAGCCATGAAGCGTCGCAGTTTGCATTCCCTAGCCTGTAAGGGAAGTAGATGAAGCGGGGAGGCCGTCAg < 2:3254365/150‑1 (MQ=255) cTGCATGCCTATGGCCCGGATGGTGTGCGCTTCTATACCCGTCGCAAGGCCATTACCCAGCGTTGGCCGCAGCGGGCCAGCCATGAAGCGTCGCAGTTTGCATTCCCTAGCCTGTAAGGGAAGTAGATGAAGCGGGGAGGCCGTCAGGcc > 1:1495929/1‑150 (MQ=255) cTGCATGCCTATGGCCCGGATGGTGTGCGCTTCTATACCCGTCGCAAGGCCATTACCCAGCGTTGGCCGCAGCGGGCCAGCCATGAAGCGTCGCAGTTTGCATTCCCTAGCCTGTAAGGGAAGTAGATGAAGCGGGGAGGCCGTCAGGcc > 2:2293760/1‑150 (MQ=255) tGCATGCCTATGGCCCGGATGGTGTGCGCTTCTATACCCGTCGCAAGGCCATTACCCAGCGTTGGCCGCAGCGGGCCAGCCATGAAGCGTCGCAGTTTGCATTCCCTAGCCTGTAAGGGAAGTAGATGAAGCGGGGAGGCCGTCAGGCCt > 1:3453985/1‑150 (MQ=255) tGCATGCCTATGGCCCGGATGGTGTGCGCTTCTATACCCGTCGCAAGGCCATTACCCAGCGTTGGCCGCAGCGGGCCAGCCATGAAGCGTCGCAGTTTGCATTCCCTAGCCTGTAAGGGAAGTAGATGAAGCGGGGAGGCCGTCAGGCCt > 1:3454142/1‑150 (MQ=255) tGCATGCCTATGGCCCGGATGGTGTGCGCTTCTATACCCGTCGCAAGGCCATTACCCAGCGTTGGCCGCAGCGGGCCAGCCATGAAGCGTCGCAGTTTGCATTCCCTAGCCTGTAAGGGAAGTAGATGAAGCGGGGAGGCCGTCAGGCCt > 1:1716469/1‑150 (MQ=255) aTGCCTATGGCCCGGATGGTGTGCGCTTCTATACCCGTCGCAAGGCCATTACCCAGCGTTGGCCGCAGCGGGCCAGCCATGAAGCGTCGCAGTTTGCATTCCCTAGCCTGTAAGGGAAGTAGATGAAGCGGGGAGGCCTGACGGCCTccc < 1:4306457/150‑1 (MQ=255) gCCTATGGCCCGGATGGTGTGCGCTTCTATACCCGTCGCAAGGCCATTACCCAGCGTTGGCCGCAGCGGGCCAGCCATGAAGCGTCGCAGTTTGCATTCCCTAGCCTGTAAGGGAAGTAGATGAAGCGGGGAGGCCTGACGGCCTCCCCg < 2:2354233/150‑1 (MQ=255) ccTATGGCCCGGATGGTGTGCGCTTCTATACCCGTCGCAAGGCCATTACCCAGCGTTGGCCGCAGCGGGCCAGCCATGAAGCGTCGCAGTTTGCATTCCCTAGCCTGTAAGGGAAGTAGATGACGCGGGGAGGCCGTCAGGCCTCCCCGc < 2:2199462/150‑1 (MQ=255) ccTATGGCCCGGATGGTGTGCGCTTCTATACCCGTCGCAAGGCCATTACCCAGCGTTGGCCGCAGCGGGCCAGCCATGAAGCGTCGCAGTTTGCATTCCCTAGCCTGTAAGGGAAGTAGATGAAGCGGGGAGGCCTGACGGCCTCCCCGc < 1:4370690/150‑1 (MQ=255) cTATGGCCCGGATGGTGTGCGCTTCTATACCCGTCGCAAGGCCATTACCCAGCGTTGGCCGCAGCGGGCCAGCCATGAAGCGTCGCAGTTTGCATTCCCTAGCCTGTAAGGGAAGTAGATGAAGCGGGGAGGCCGTCAGGCCTCCCCGCt > 2:126919/1‑150 (MQ=255) aTGGCCCGGATGGTGTGCGCTTCTATACCCGTCGCAAGGCCATTACCCAGCGTTGGCCGCAGCGGGCCAGCCATGAAGCGTCGCAGTTTGCATTCCCTAGCCTGTAAGGGAAGTAGATGAAGCGGGGAGGCCGTCAGGCCTCCCCGCttt < 2:3421473/150‑1 (MQ=255) cGGATGGTGTGCGCTTCTATACCCGTCGCAAGGCCATTACCCAGCGTTGGCCGCAGCGGGCCAGCCATGAAGCGTCGCAGTTTGCATTCCCTAGCCTGTAAGGGAAGTAGATGAAGCGGGGAGGCCGTCAGGCCTCCCCGCGTTGttttt > 2:3334280/1‑150 (MQ=255) cGGATGGTGTGCGCTTCCATACCCGTCGCAAGGCCATTACCCAGCGTTGGCCGCAGCGGGCCAGCCATGAAGCGTCGCAGTTTGCATTCCCTAGCCTGTAAGGGAAGTAGATGAAGCGGGGAGGCCGTCAGGCCTCCCCGCTTTGttttt > 1:1799677/1‑150 (MQ=255) ggttGGTGTGCGCTTCTATCCCCGTCGCAAGGCCATTACCCAGCGTTGGCCGCAGCGGGCCAGCCTTGACGCGTCGCTGTTTGCTTTCCCTAGCCTGTACGGGAAGTATATGACGCGGGGAGGCCGTCAGGCCTCCCCGCTTTGTTTTTg < 1:4341626/147‑1 (MQ=255) tGGTGTGCGCTTCTATACCCGTCGCAAGGCCATTACCCAGCGTTGGCCGCAGCGGGCCAGCCATGAAGCGTCGCAGTTTGCATTCCCTAGCCTGTAAGGGAAGTAGATGAAGCGGGGAGGCCGTCAGGCCTCCCCGCTTTGTTTTTgggg > 2:1013309/1‑150 (MQ=255) gcTTCTATACCCGTCGCAAGGCCATTACCCAGCGTTGGCCGCAGCGGGCCAGCCATGAAGCGTCGCAGTTTGCATTCCCTAGCCTGTAAGGGAAGTAGATGAAGCGGGGAGGCCGTCAGGCCTCCCCGCTTTGTTTTTGGGGgttggttg > 1:4138060/1‑150 (MQ=255) cTTCTATACCCGTCGCACGTCCATTACCCCGCGTTGGCCGCAGCGGGCCAGCCATGAAGCGTCGCTGTTTGCATTCCCTAGCCTGTAAGGGAAGTAGATTAAGCGGGGAGGCCGTAAGGCATCCCCGCTTTGTTTTTGGGGGTTGgttgt < 2:3124900/150‑1 (MQ=255) ttCTATACCCGTCGCAAGGCCATTACCCAGCGTTGGCCGCAGCGGGCCAGCCATGAAGCGTCGCAGTTTGCATTCCCTAGCCTGTAAGGGAAGTAGATGAAGCGGGGAGGCCGTCAGGCCTCCCCGCTTTGTTTTTGGGGGTTGgttgtt < 2:2390454/150‑1 (MQ=255) ttCTATACCCGTCGCAAGGCCATTACCCAGCGTTGGCCGCAGCGGGCCAGCCATGAAGCGTCGCAGTTTGCATTCCCTAGCCTGTAAGGGAAGTAGATGAAGCGGGGAGGCCGTCAGGCCTCCCCGCTTTGTTTTTGGGGGTTGgttgtt > 2:3706660/1‑150 (MQ=255) taCCCGTCGCAAGGCCATTACCCAGCGTTGGCCGCAGCGGGCCAGCCATGAAGCGTCGCAGTTTGCATTCCCTAGCCTGTAAGGGAAGTAGATGAAGCGGGGAGGCCGTCAGGCCTCCCCGCTTTGTTTTTGGGGGTTGGTTGTTGCTGt < 1:4061040/150‑1 (MQ=255) ccggTCGCATGGCATTTACCCTGGGTGGGCCGCTGGGGGCAAGCATTTATGCGTCGCTTTTTGAATTCCCTCGCCTTTAAGGTATTTAGATGACGGGGGGTGGCCGTCCGGCCTCCCCGCTTTGTTTTTGGGGGTTGGTTGTTGCTGTTg < 1:1664502/147‑1 (MQ=16) cccGTCGCAAGGCCATTACCCAGCGTTGGCCGCAGCGGGCCAGCCATGAAGCGTCGCAGTTTGCATTCCCTAGCCTGTAAGGGAAGTAGATGAAGCGGGGAGGCCGTCAGGCCTCCCCGCTTTGTTTTTGGGGGTGGGTTGTTGCTGTTg > 2:3633473/1‑150 (MQ=255) ccGTCGCAAGGCCATTACCCAGCGTTGGCCGCAGCGGGCCAGCCATGAAGCGTCGCAGTTTGCATTCCCTAGCCTGTAAGGGAAGTAGATGAAGCGGGGAGGCCGTCAGGCCTCCCCGCTTTGTTTTTGGGGGTTGGTTGTTGCTGTTgg > 2:4498454/1‑150 (MQ=255) ccGTCGCAAGGCCATTACCCAGCGTTGGCCGCAGCGGGCCAGCCATGAAGCGTCGCAGTTTGCATTCCCTAGCCTGTAAGGGAAGTAGATGAAGCGGGGAGGCCGTCAGGCCTCCCCGCTTTGTTTTTGGGGGTTGGTTGTTGCTGTTgg > 2:661786/1‑150 (MQ=255) ccGTCGCAAGGCCATTACCCAGCGTTGGCCGCAGCGGGCCAGCCATGAAGCGTCGCAGTTTGCATTCCCTAGCCTGTAAGGGAAGTAGATGAAGCGGGGAGGCCGTCAGGCCTCCCCGCTTTGTTTTTGGGGGTTGGTTGTTGCTGTTgg > 1:2122500/1‑150 (MQ=255) gCCATTACCCAGCGTTGGCCGCAGCGGGCCAGCCGTGAAGCGTCGCAGTTTGCATTCCCTAGCCTGTAAGGGAAGTAGATGAAGCGGGGAGGCCGTCAGGCCTCCCCGCTTTGTTTTTGGGGGTTGGTTGTTGCTGTTGGGGAGGAACTg > 2:4307304/1‑150 (MQ=255) aaTTCCCCAGGGTTGGCCGCTGCGGGCCAGCCATGATGGGTCGCTGTTTGCATTCCCTCGCCTGTATGGGAATTTGTTGACGGGGGGCGGCGGTCCGGCCCCCCCGCTTTGTTTTTGGGGGTTGGTTGTTGCTGTTGGGGAGGAACTGtt < 1:2333644/149‑1 (MQ=255) aCCCAGCGTTGGCCGCAGCGGGCCAGCCATTACGGGTCGCTGTTTGCATTCCCTAGCCTGTAAGGGAAGTTGATGAAGGGGGTAGGCCGTCTGGCCTCCCCGCTTTGTTTTTGGGGGTTGGTTGTTGCTGTTGGGGAGGAACTGTTTTga < 2:189160/150‑1 (MQ=38) ccAGCGTTGGCCGCAGCGGGCCAGCCATGAAGCGTCGCAGTTTGCATTCCCTAGCCTGTAAGGGAAGTAGATGAAGCGGGGAGGCCGTCAGGCCTCCCCGCGTTGTTTTTGGGGGTTGGTTGTTGCTGTTGGGGAGGAACTGTTTTgaga > 2:1561509/1‑150 (MQ=255) ccAGCGTTGGCCGCAGCGGGCCAGCCATGAAGCGTCGCAGTTTGCATTCCCTAGCCTGTAAGGGAAGTAGATGAAGCGGGGAGGCCGTCAGGCCTCCCCGCGTTGTTGTTGGGGGTTGGTGGTTGCTGTTGGGGAGGAACTGTTTGgaga > 2:4369299/1‑150 (MQ=255) tgggTTGGCCGCCGCGGGCCATCAATTATGCGTCGCTTTTTTATTTCCCTAGCTTGTATGGTATTTTTATGATGGGGGGTGGCGGTCTGGCCTCCCCGCTTTGTTTTTGGGGGTTGGTTGTTGCTGTTGGGGAGGAACTGTTTTGAGAgg < 1:1235177/147‑1 (MQ=255) tgggTTGGCCGCAGCGGGCCTGCCTTTAAGCGTCGCTTTTTGAATTCCCTAGCCTGTATGGTATTTTGTTGATGGGGGGAGGCCTTCAGGCCTCCCCGCTTTGTTTTTGGGGGTTGGTTGTTGCTGTTGGGGAGGAACTGTTTTGAGAgg < 1:3198077/147‑1 (MQ=25) ttGGCCGCAGCGGGCCAGCCATGAAGCGTCGCAGTTTGCATTCCCTGGCCTGTAAGGGAAGTAGATGAAGCGGGGGGGCCGTCAGGCCTACCCGCGTTGTTTTTGGGGGTTGGTTTTTTCTGTTGGGGGGGAACTGTTTTGTGAGGgggt > 1:3081567/1‑150 (MQ=255) ttGGCCGCAGCGGGCCAGCCATGAAGCGTCGCAGTTTGCATTCCCTGGCCTGTAAGGGAAGTAGATGAAGCGGGGAGGCCGTCAGGCCTCCCCGCTTTGTTTTTGGGGGTTGGTTGTTGCTGTTGGGGAGGAACTGGTTTGAGAGGgtgt > 1:1800068/1‑150 (MQ=255) tGGCCGCAGCGGGCCAGCCATGAAGCGTCGCAGTTTGCATTCCCTAGCCTGTAAGGGAAGTAGATGAAGCGGGGAGGCCGTAAGGCCTCCCCGCTTTGTTTTTGGGGGTTGGTTGTTGCTGTTGGGGAGGAACTGTTTTGAGAGGGTGtt < 1:1823094/150‑1 (MQ=255) gCCGCAGCGGGCCAGCCATTAAGCGTCGCAGTTTGCATTCCCTAGCCTGTAAGGTAAGTAGATGAAGCGGGGAGGCCGTCAGGCCTCCCCGCTTTGTTTTTGGGGGTTGGTTGTTGCTGTTGGGGAGGAACTGTTTTGAGAGGGTGTTgg < 2:2521668/150‑1 (MQ=255) gCCGCAGCGGGCCAGCCATGAAGCGTCGCAGTTTGCATTCCCTAGCCTGTAAGGGAAGTAGATGAAGCGGGGAGGCCGTCAGGCCTCCCCGCTTTGTTTTTGGGGGTTGGTTGTTGCTGTTGGGGAGGAACTGTTTTGAGAGGGTGTTgg > 1:4283122/1‑150 (MQ=255) ccGCAGCGGGCCAGCCATGAAGCGTCGCAGTTTGCATTCCCTAGCCTGTAAGGGAAGTAGATGAAGCGGGGAGGCCGTCAGGCCTCCCCGGGTTGTTTTTGGGGGTTGGTTGTTGCTGTTGGGGAGGAACTGTTTTGAGAGGGTGTTGGc > 2:3866835/1‑150 (MQ=255) cGCAGCGGGCCAGCCATTATGCGTCGCTGTTTGCATTCCCTAGCCTGTACGGGATGTTGTTGACGGGGGGAGGCCGTCCGGCCTCCCCGCTTTGTTTTTGGGGGTTGGTTGTTGCTGTTGGGGAGGAACTGTTTTGAGAGGGTGTTGGCt < 1:2374249/150‑1 (MQ=37) cGCAGCGGGCCAGCCATGAAGCGTCGCAGTTTGCATTCCCTAGCCTGTAAGGGAAGTAGATGAAGCGGGGAGGCCGTCAGGCCTCCCCGCTTTGTTTTTGGGGGTTGGTTGTTGCTGTTGGGGAGGAACTGTTTTGAGAGGGTGTTGGCt > 2:3556680/1‑150 (MQ=255) gCGGGCCAGCCATGAAGCGTCGCAGTTTGCATTCCCTAGCCTGTAAGGGAAGTAGATGAAGCGGGGAGGCCGTCAGGCCTCCCCGCTTTGTTTTTGGGGGTTGGTTGTTGCTGTTGGGGAGGAACTGTTTTGAGAGGGTGTTGGCTGTga < 1:2594824/150‑1 (MQ=255) gCGGGCCAGCCATGAAGCGTCGCAGTTTGCATTCCCTAGCCTGTAAGGGAAGTAGATGAAGCGGGGAGGCCGTCAGGCCTCCCCGCTTTGTTTTTGGGGGTTGGTTGTTGCTGTTGGGGAGGAACTGTTTTGAGAGGGTGTTGGCTGTga < 2:2069629/150‑1 (MQ=255) gCGGGCCAGCATTGACGGGTCGCTTTTGGCTTCCCCTAGCCTTTACGGTATTTTTATGACGGGGGGTGGCCGTCTGGCCCCCCCGCTTTGTTTTTGGGGGTTGGTTGTTGCTGTTGGGGAGGAACTGTTTTGAGAGGGTGTTGGCTGTga < 1:410283/150‑1 (MQ=255) ggCCAGCCATGAAGCGTCGCAGTTTGCATTCCCTAGCCTGTACGGGAAGTAGATGAAGCGGGGAGGCCGTCAGGCCTCCCCGCTTTGTTTTTGGGGGTTGGTTGTTGCTGTTGGGGAGGAACTGTTTTGAGAGGGTGTTGGCTGTGAGAt < 2:3430833/150‑1 (MQ=255) ggCCAGCCATGAAGCGTCGCAGTTTGCATTCCCTAGCCTGTAAGGGAAGTAGATGAAGCGGGGAGGCCGTCAGGCCTCCCCGCGTTGTTTTTGGGGGTTGGTTGTTGCTGTTGGGGAGGAACTGTTTTGAGAGGGTGTTGGCTGTGAGAt > 1:2740324/1‑150 (MQ=255) ccagcatTGATGCGTCGCTGTTTTATTTCCCTAGCCTTTATGGTATTTTTATGATGGGGGGTGGCCTTCAGGCCTCCCCGCTTTGTTTTTGGGGGTTGGTTGTTGCTGTTGGGGAGGAACTGTTTTGAGAGGGTGTTGGCTGTGAGAtgt < 1:1172135/150‑1 (MQ=21) agccaTGAAGCGTCGCAGTTTGCATTCCCTAGCCTGTAAGGGAAGTAGATGAAGCGGGGAGGCCGTCAGGCCTCCCCGCTTTGTTTTTGGGGGTTGGTTGTTGCTGTTGGGGAGGAACTGTTTTGAGAGGGTGTTGGCTGTGAGATgtgt > 2:3920589/1‑150 (MQ=255) aTGAAGCGTCGCAGTTTGCATTCCCTAGCCTGTAAGGGAAGTAGATGAAGCGGGGAGGCCGTCAGGCCTACCCGCTGTGGTTTTGGGGGGTGGTTGTTGCGTTTGGGGAGGAACTGTTTTTAGAGGGTGTTGGCTGTGAGATGTGTCCGc > 1:1033011/1‑150 (MQ=255) tGAAGCGTCGCAGTTTGCATTCCCTAGCCTGTAAGGGAAGTAGATGAAGCGGGGAGGCCGTCAGGCCTCCCCGCTTTGTTTTTGGGGGTTGGTTGTTGCTGTTGGGGAGGAACTGTTTTGAGAGGGTGTTGGCTGTGAGATGTGTCCGcc < 2:3620631/150‑1 (MQ=255) tGAAGCGTCGCAGTTTGCATTCCCTAGCCTGTAAGGGAAGTAGATGAAGCGGGGAGGCCGTCAGGCCTCCCCGCTTTGTTTTTGGGGGTTGGTTGTTGCTGTTGGGGAGGAACTGTTTTGAGAGGGTGTTGGCTGTGAGATGTGTCCGcc > 2:1519225/1‑150 (MQ=255) tGAAGCGTCGCAGTTTGCATTCCCTAGCCTGTAAGGGAAGTAGATGAAGCGGGGAGGCCGTCAGGCCTCCCCGCTTTGTTTTTGGGGGTTGGTTGTTGCTGTTGGGGAGGAACTGTTTTGAGAGGGTGTTGGCTGTGAGATGTGTCCGcc > 2:1330265/1‑150 (MQ=255) gTCGCAGTTTGCATTCCCTAGCCTGTAAGGGAAGTAGATGAAGCGGGGAGGCCGTCAGGCCTCCCCGCTTTGTTTTTGGGGGTTGGTTGTTGCTGTTGGGGAGGAACTGTTTTGAGAGGGTGTTGGCTGTGAGATGTGTCCGCCACAAcc < 1:2624654/150‑1 (MQ=255) tCGCAGTTTGCATTCCCTAGCCTGTAAGGGAAGTAGATGAAGCGGGGAGGCCGTCAGGCCTCCCCGCTTTGTTTTTGGGGGTTGGTTGTTGCTGTTGGGGAGGAACTGTTTTGAGAGGGTGTTGGCTGTGAGATGTGTCCGCCACAAccc > 1:2188113/1‑150 (MQ=255) cGCCGTTTGCAGTCCCTAGCCTGTAAGGGAAGTAGATGAAGCGGGGAGGCCGTCAGGCCTCCCCGCTTTGTTTTTGGGGGTTGGTTGTTGCTGTTGGGGAGGAACTGTTTTGAGAGGGTGTTGGCTGTGAGATGTGTCCGCCACAACCCt < 2:1885305/150‑1 (MQ=255) cGCAGTTTGCATTCCCTAGCCTGTAGGGGAAGTAGATGAAGCGGGGAGGCCGTCAGGCCTCCCCGCTTTGTTTTTGGGGGTTGGTTGTTGCTGTTGGGGAGGAACTGTTTTGAGAGGGTGTTGGCTGTGAGTTGTGTCCGCCACAACCCt > 1:1552264/1‑150 (MQ=255) gCAGTTTGCATTCCCTAGCCTGTAAGGGAAGTAGATGAAGCGGGGAGGCCGTCAGGCCTCCCCGCTTTGTTTTTGGGGGTTGGTTGTTGCTGTTGGGGAGGAACTGTTTTGAGAGGGTGTTGGCTGTGAGATGTGTCCGCCACAACCCtt < 1:2171758/150‑1 (MQ=255) ctttttGCATTCCCTCGCCTTTACGGTAAGTAGATGAAGCGGGGCGGCCGTCAGGCCTCCCCGCTTTGTTTTTGGGGGTTGGTTGTTGCTGTTGGGGAGGAACTGTTTTGAGAGGGTGTTGGCTGTGAGATGTGTCCGCCACAACCCTTg < 1:3777458/147‑1 (MQ=25) gTTTGCATTCCCTAGCCTGTAAGGGAAGTTGTTGATGCGGGGTGGCCGTCAGGCCTCCCCGCTTTGTTTTTGGGGGTTGGTTGTTGCTGTTGGGGAGGAACTGTTTTGAGAGGGTGTGGGCTGTGAGATGTGTCCGCCACAACCCTTGCa < 2:473607/150‑1 (MQ=25) gCATTCCCTAGCCTGTAAGGGAAGTAGATGAAGCGGGGAGGCCGTCAGGCCTCCCCGCTTTGTTTTTGGGGGTTGGTTGTTGCTGTTGGGGAGGAACTGTTTTGAGAGGGTGTTGGCTGTGAGATGTGTCCGCCACAACCCTTGCAGTGc < 2:3109503/150‑1 (MQ=255) cATTCCCTAGCCTGTAAGGGAAGTAGATGAAGCGGGGAGGCCGTCAGGCCTCCCCGCTTTGTTTTTGGGGGTTGGTTGTTGCTGTTGGGGAGGAACTGTTTTGAGAGGGTGTTGGCTGTGAGATGTGTCCGCCACAACCCTTGCAGTGcc < 1:3552154/150‑1 (MQ=255) cATTCCCTAGCCTGTAAGGGAAGTAGATGAAGCGGGGAGGCCGTCAGGCCTCCCCGCTTTGTTTTTGGGGGTTGGTTGTTGCTGTTGGGGAGGAACTGTTTTGAGAGGGTGTTGGCTGTGAGATGTGTCCGCCACAACCCTTGCAGTGcc > 2:2130036/1‑150 (MQ=255) ccTAGCCTGTAAGGGAAGTAGATGAAGCGGGGAGGCCGTCAGGCCTCCCCGCTTTGTTTTTGGGGGTTGGTTGTTGCTGTTGGGGAGGAACTGTTTTGAGAGGGTGTTGGCTGTGAGATGTGTCCGCCACAACCCTTGCAGTGCCTGTga < 2:1716469/150‑1 (MQ=255) ccTAGCCTGTAAGGGAAGTAGATGAAGCGGGGAGGCCGTCAGGCCTCCCCGCTTTGTTTTTGGGGGTTGGTTGTTGCTGTTGGGGAGGAACTGTTTTGAGAGGGTGTTGGCTGTGAGATGTGTCCGCCACAACCCTTGCAGTGCCTGTga > 2:4424538/1‑150 (MQ=255) ccTAGCCTGTAAGGGAAGTAGATGAAGCGGGGAGGCCGTCAGGCCTCCCCGCTTTGTTTTTGGGGGTTGGTTGTTGCTGTTGGGGAGGAACTGTTTTGAGAGGGTGTTGGCTGTGAGATGTGTCCGCCACAACCCTTGCAGTGCCTGTga < 2:684767/150‑1 (MQ=255) ccTAGCCTGTAAGGGAAGTAGATGAAGCGGGGAGGCCGTCAGGCCACCCCGCTTTGTTTTTGGGGGTTGGTTGTTGCTGTTGGGGAGGAACAGTTTTTAGAGGGTGTTGGCAGTGAGATTTGTCCGCCACAAACCATTCAGTGACTGTga > 1:562136/1‑150 (MQ=255) tAGCCTGTAAGGGAAGTAGATGAAGCGGGGAGGCCGTCATGCCTACCCGCTTTGTTTTTTGGGGTTTGTTGTTTCTGTTTGGGAGGTACTGTTTTTAGATGGTGTTGTGTGTGTGATTTTTACGCCACAAACCTTGCAGTTGCTGTgagt > 1:2347011/1‑149 (MQ=255) tAGCCTGTAAGGGAAGTAGATGAAGCGGGGAGGCCGTCAGGCCTCCCCGCTTTGTTTTTGGGGGTTGGTTGTTGCTGTTGGGGAGGAACTGTTTTGAGAGGGTGTTGGCTGTGAGATGTGTCCGCCACAACCCTTGCAGTGCCTGTgaga > 2:2226562/1‑150 (MQ=255) tAGCCTGTAAGGGAAGTAGATGAAGCGGGGAGGCCGTCAGGCCTCCCCGCTTTGTTTTTGGGGGTTGGTTGTTGCTGTTGGGGAGGAACTGTTTTGAGAGGGTGTTGGCTGTGAGATGTGTCCGCCACAACCCTTGCAGTGCCTGTgaga > 2:4197627/1‑150 (MQ=255) tAGCCTGTAAGGGAAGTAGATGAAGCGGGGAGGCCCTCAGGCCTCCCCCCTTTGGTTTTGGGGGGTGGTTGTTGCTGTTGGGGAGGAACAGTTTTGAGAGGGTGTTGGCGGGGAGATGTGTCCGCCACAACCCATGCAGTGCCAGTgaga > 1:4180975/1‑150 (MQ=25) gCCTGTATGGCAAGTAGATGACGGGGGGAGGCGGTCAGGCCTCCCCGCTTTGTTTTTGGGGGTTGGTTGTTGCTGTTGGGGAGGAACTGTTTTGAGAGGGTGTTGGCTGTGAGATGTGTCCGCCACAACCCTTGCAGTGCCTGTGAGATc < 1:2296609/150‑1 (MQ=21) gCCTGTACGGTAAGTAGATGACGCGGGGCGGCCGTCAGGCCTCCCCGCTTTGTTTTTGGGGGTTGGTTGTTGCTGTTGGGGAGGAACTGTTTTGAGAGGGTGTTGGCTGTGAGATGTGTCCGCCACAACCCTTGCAGTGCCTGTGAGATc < 1:3043069/150‑1 (MQ=255) cTGTAAGGGAAGTAGATGAAGCGGGGAGGCCGTCAGGCCTCCCCGCTTTGTTTTTGGGGGTTGGTTGTTGCTGTTGGGGAGGAACTGTTTTGAGAGGGTGTTGGCTGTGAGATGTGTCCGCCACAACCCTTGCAGTGCCTGTGAGATCGa < 2:1025324/150‑1 (MQ=255) cTGTAAGGGAAGTAGATGAAGCGGGGAGGCCGTCAGGCCTCCCCGCTTTGTTTTTGGGGGTTGGTTGTTGCTGTTGGGGAGGAACTGTATTGAGAGGGTGTTGGCTGTGAGATGTGTCCGCCACAACCCTTGCAGTGCCTGTGAGATCGa < 2:3542554/150‑1 (MQ=255) tGTAAGGGAAGTAGATGAAGCGGGGAGGCCGTCAGGCCTCCCCGCTTTGTTTTTGGGGGTTGGTTGTTGCTGTTGGGGAGGAACTGTTTTGAGAGGGTGTTGGCTGTGAGATGTGTCCGCCACAACCCTTGCAGTGCCTGTGAGATCGAg < 2:2188113/150‑1 (MQ=255) gTAAGGGAAGTAGATGAAGCGGGGAGGCCGTCAGGCCTCCCCGCTTTGTTTTTGGGGGTTGGTTGTTGCTGTTGGGGAGGaa < 1:3732553/82‑1 (MQ=255) gTAAGGGAAGTAGATGAAGCGGGGAGGCCGTCAGGCCTCCCCGCTTTGTTTTTGGGGGTTGGTTGTTGCTGTTGGGGAGGaa > 2:3732553/1‑82 (MQ=255) gTAAGGGAAGTAGATGAAGCGGGGAGGCCGTCAGGCCTCCCCGCTTTGTTTTTGGGGGTTGGTTGTTGCTGTTGGGGAGGAACTGTTTTGAGAGGGTGTTGGCTGTGAGATGTGTCCGCCACAACCCTTGCAGTGCCTGTGAGATCGAgc < 2:3454142/150‑1 (MQ=255) tAAGGGAAGTAGATGAAGCGGGGAGGCCGTCAGGCCTCCCCGCTTTGTTTTTGGGGGTTGGTTGTTGCTGTTGGGGAGGAACTGTTTTGAGAGGGTGTTGGCTGTGAGATGTGTCCGCCACAACCCTTGCAGTGCCTGTGAGATCGAgcg > 1:3762927/1‑150 (MQ=255) gAAGTAGATGAAGCGGGGAGGCCGTCAGGCCTCCCCGCTTTGTTTTTGGGGGTTGGTTGTTGCTGTTGGGGAGGAACTGTTTTGAGAGGGTGTTGGCTGTGAGATGTGTCCGCCACAACCCTTGCAGTGCCTGTGAGATCGAGCgccgcc > 2:4219232/1‑150 (MQ=255) tAGATGAAGCGGGGAGGCCGTCAGGCCTCCCCGCTTTGGTTTTGGGGGTTGGTTGTTGCTGTTGGGGAGGAACTGTTTTGAGAGGGTGTTGGCTGTGAGATGTGTCCGCCACAACCCTTGCAGTGCCAGTGAGATCGAGCGCCGCCcgcg > 2:1714913/1‑150 (MQ=255) ataTGACGGGGGGAGGCCGTCAGGCCTCCCCGCTTTGTTTTTGGGGGTTGGTTGTTGCTGTTGGGGAGGAACTGTTTTGAGAGGGTGTTGGCTGTGAGATGTGTCCGCCACAACCCTTGCAGTGCCTGTGAGATCGAGCGCCGCCcgcgc < 1:1972853/148‑1 (MQ=255) tGAAGCGGGGAGGCCGTCAGGCCTCCCCGCTTTGTTTTTGGGGGTTGGTTGTTGCTGTTGGGGAGGAACTGTTTTGAGAGGGTGTTGGCTGTGAGATGTGTCCGCCACAACCCTTGCAGTGCCTGTGAGATCGAGCGCCGCCCGCgcggc < 2:3803066/150‑1 (MQ=255) cgCGGGGAGGCCGTCCGGCCTCCCCGCTTTGTTTTTGGGGGTTGGTTGTTGCTGTTGGGGAGGAACTGTTTTGAGAGGGTGTTGGCTGTGAGATGTGTCCGCCACAACCCTTGCAGTGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCt < 1:2420879/149‑1 (MQ=255) gCGGGGAGGCCGTCAGGCCTCCCCGCTTTGTTTTTGGGGGTTGGTTGTTGCTGTTGGGGAGGAACTGTTTTGAGAGGGTGTTGGCTGTGAGATGTGTCCGCCACAACCCTTGCAGTGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTc > 1:1838831/1‑150 (MQ=255) ggggAGGCCTGACGGCCTCCCCGCTTTGTTTTTGGGGGTTGGTTGTTGCTGTTGGGGAGGAACTGTTTTGAGAGGGTGTTGGCTGTGAGATGTGTCCGCCACAACCCTTGCAGTGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCgg > 2:3010007/1‑150 (MQ=255) ggggAGGCCTGACGGCCTCCCCGCTTTGTTTTTGGGGGTTGGTTGTTGCTGGTGGGGAGGAACTGTTTTGAGAGGGTGTTGGCTGTGAGATGTGTCCGCCACAACCCTTGCAGTGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCgg > 2:3009654/1‑150 (MQ=18) ggggAGGCCTGACGGCCACCCCGCTTTGTTTTTGGGGGGTGGTTGTTGCTGTTTGGGAGGAACTGTTTTGAGAGGGTGTTGGCTGTGAGATGTGTCCGCCACAACCCTTGCAGTGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCgg > 1:860062/1‑150 (MQ=18) ggggAGGCCGTCAGGCCTCCCCGCTTTGTTTTTGGGGGTTGGTTGTTGCTGTTGGGGAGGAACTGTTTTGAGAGGGTGTTGGCTGTGAGATGTGTCCGCCACAACCCTTGCAGTGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCgg < 2:2298779/150‑1 (MQ=255) ggggAGGCCGTCAGGCCTCCCCGCTTTGTTTTTGGGGGTTGGTTGTTGCTGGTGGGGAGGACCTGTTTTGAGAGGGTGTTGGCTGTGAGATGTGTCCGCCACAACCCTTGCAGTGCCTGTGAGATCGAGCGCCGCCcgcgcggcgcgcgg > 2:1999079/1‑150 (MQ=255) ggggAGGCCGTCAGGCCTCCCCGCTTTGGTTTTGGGGGTTGGTTGTTGCTGTTGGGGAGGAACTGTTTTGAGAGGGTGTTGGCTGTGAGATGTGTCCGCCACAACCCTTGCAGTGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCgg > 2:4405971/1‑150 (MQ=255) ggAGGCCGTCAGGCCTCCCCGCTTTGTTTTTGGGGGTTGGTTGTTGCTGTTGGGGAGGAACTGTTTTGAGAGGGTGTTGGCTGTGAGATGTGTCCGCCACGACAGTTTCAGTGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGGtc < 2:2122500/150‑1 (MQ=255) ggAGGCCGTCAGGCCTCCCCGCTTTGTTTTTGGGGGTTGGTTGTTGCTGTTGGGGAGGAACTGTTTTGAGAGGGTGTTGGCTGTGAGATGTGTCCGCCACAACCCTTGCAGCGCCTGTGAGACCGAGCGCCGCGCGGGCGGCGCTCGAtc < 1:2830128/150‑1 (MQ=18) aGGCCGTCAGGCCTCCCCGCTTTGTTTTTGGGGGTTGGTTGTTGCTGTTGGGGAGGAACTGTTTTGAGAGGGTGTTGGCTGTGAGATGTGTCCGCCACAACCCTTGCAGTGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGGtctc < 1:2419802/150‑1 (MQ=255) ggCCGTCAGGCCTCCCCGCTTTGTTTTTGGGGGTTGGTTGTTGCTGTTGGGGAGGAACTGTTTTGAGAGGGTGTTGGCTGTGAGATGTGTCCGCCACAACCCTTGCAGTGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGGTCTca < 2:2498545/150‑1 (MQ=255) gCCGTCTGGCCTCCCCGCTTTG‑TTTTGGGGGTTGGTTGTTGCTGTTGGGGAGGAACTGTTTTGAGAGGGTGTTGGCTGTGAGATGTGTCCGCCACAACCCTTGCAGTGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGGTCTcaca < 2:737298/150‑1 (MQ=255) gCCGTCAGGCCTCCCCGCTTTGTTTTTGGGGGTTGGTTGTTGCTGTTGGGGAGGAACTGTTTTGAGAGGGTGTTGGCTGTGAGATGTGTCCGCCACAACCCTTGCAGTGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGGTCTcac > 2:859797/1‑150 (MQ=255) gTCAGGCCTCCCCGCTTTGTTTTTGGGGGTTGGTTGTTGCTGTTGGGGAGGAACTGTTTTGAGAGGGTGTTGGCTGTGAGATGTGTCCGCCACAACCCTTGCAGTGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGGTCTCACAgg > 2:2221814/1‑150 (MQ=255) gTCAGGCCTCCCCGCTTTGTTTTTGGGGGTTGGTTGTTGCTGTTGGGGAGGAACTGTTTTGAGAGGGTGTTGGCTGTGAGATGTGTCCGCCACAACCCTTGCAGTGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGGTCTCACAgg > 1:1002889/1‑150 (MQ=255) | GACCTGCATGCCTATGGCCCGGATGGTGTGCGCTTCTATACCCGTCGCAAGGCCATTACCCAGCGTTGGCCGCAGCGGGCCAGCCATGAAGCGTCGCAGTTTGCATTCCCTAGCCTGTAAGGGAAGTAGATGAAGCGGGGAGGCCGTCAGGCCTCCCCGCTTTGTTTTTGGGGGTTGGTTGTTGCTGTTGGGGAGGAACTGTTTTGAGAGGGTGTTGGCTGTGAGATGTGTCCGCCACAACCCTTGCAGTGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGGTCTCACAGG > NC_002947/696957‑697251 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |