| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 955,158 | C→T | 10.4% | intergenic (+109/‑204) | cyoE → / → alaC | protoheme IX farnesyltransferase/aminotransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 955,158 | 0 | C | T | 10.4% | 238.5 / 16.3 | 96 | intergenic (+109/‑204) | cyoE/alaC | protoheme IX farnesyltransferase/aminotransferase |
| Reads supporting (aligned to +/- strand): ref base C (42/41); new base T (3/6); total (47/49) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.86e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.97e-02 | |||||||||||
CCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTT‑CCTGTGCCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACAAGGTTCCTGTAGGA‑GCGGGTTTACCCGCGAAGAGGCCAGCACA‑GAAAAATAAAAATACCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGAAATTATCCTTTACAGGCATCCTGTTTCGGCACTATCTTCTGATTCAGGCCGCCA > NC_002947/955010‑955307 | ccAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTT‑CCTGTGCCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACAAGGTTCCt < 1:2918796/150‑1 (MQ=255) cAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTT‑CCTGTGCCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACAAGGTTCCTg < 1:2852808/150‑1 (MQ=255) cAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTT‑CCTGTGCCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACAAGGTTCCTg < 1:2561845/150‑1 (MQ=255) cAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTT‑CCTGTGCCGGCCTCTTCGC‑GGGTAAAACCGCTCCAACAAGGTTccgg > 2:3937322/1‑148 (MQ=255) aGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAAGTGCTGCCTGTTTCACGAAAACCCCGGCCTCTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTT‑CCTGTGCGGGGCTCTTCGC‑GGGTAAACCCGCTCCTACCCGGTTCgtgt < 2:494172/150‑1 (MQ=255) aGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTT‑CCTGTGCCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACAAGGTTCCTGt < 1:719996/150‑1 (MQ=255) aGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTT‑CCTGTGCCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACAAGGTTCCTGt < 2:2839473/150‑1 (MQ=255) aCCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTT‑CCTGTGCCGGCCTCTTCGC‑GGGTAAAACCGCTCCGACAAGGTTGCTGTAg > 2:4261689/1‑150 (MQ=255) ccGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTT‑CCTGTGCCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACAAGGTTCCTGTAgg < 2:1485955/150‑1 (MQ=255) cGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTT‑CCTGTGCCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACAAGGTTCCTGTAGGa < 2:4312527/150‑1 (MQ=255) cGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTT‑CCTGTGCCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACAAGGTTCCTGTAGGa < 2:3010037/150‑1 (MQ=255) gCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTT‑‑CTGTGCTGGCCTCTTCGC‑GGGTAAACCCGCTCCTACAGGAACCTTGTAGGA‑Gc < 1:1886367/150‑1 (MQ=25) cTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTT‑CCTGTGCCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACAGGAACCTTGTAGGA‑Gc < 2:246154/150‑1 (MQ=38) cTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTT‑CCTGTGCCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACAGGAACCTTGTAGGA‑Gc < 2:2903532/150‑1 (MQ=38) cTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTT‑CCTGTGCCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACAAGGTTCCTGTAGGA‑Gc < 1:475235/150‑1 (MQ=255) cTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTT‑CCTGTGCCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACAAGGTTCCTGTAGGA‑Gc < 1:3093212/150‑1 (MQ=255) cTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTT‑CCTGTGCCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACAAGGTTCCTGTAGGA‑Gc < 1:475127/150‑1 (MQ=255) cTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTT‑CCTGTGCCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACAAGGTTCCTGTAGGA‑Gc < 1:1158589/150‑1 (MQ=255) tGCGTATGAGCTGATGACCTACGCACGATGAAACTGCTGCCTGTTTCACTAAAACCCCGCCCACTGT‑GCCGGGG‑TATTTTATTGGGGGTATTTTT‑CCTGTGCCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACAAGGTTCCTGTAGGA‑GCg < 2:2569575/150‑1 (MQ=38) tGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTT‑‑CTGTGCTGGCCTCTTCGC‑GGGTAAACCCGCTCCTACAGGAACCTTGTAGGA‑GCgg < 1:3794698/150‑1 (MQ=25) gCGGTTGTGCTGATGCCCTACGCACGCTGAAACTGCGGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGT‑TTTTTTTTTGGGGGTATTTTT‑TCTGTGCTGGCCTCTTCGC‑GGGTAAACCCGCTCCTACAGGAACCTTGTAGGA‑GCgg < 1:4326311/150‑1 (MQ=25) gCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTT‑CCTGTGCCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACAAGGTTCCTGTAGGA‑GCgg < 2:3590650/150‑1 (MQ=255) gCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTT‑CCTGTGCCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACAAGGTTCCTGTAGGA‑GCgg < 1:3296377/150‑1 (MQ=255) cGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTT‑CCTGTGCCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACAAGGTTCCTGTAGGA‑GCggg < 1:2237250/150‑1 (MQ=255) cGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTT‑CCTGTGCCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACAAGGTTCCTGTAGGA‑GCggg < 1:4274752/150‑1 (MQ=255) ggATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTT‑CCTGTGCCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACAAGGTTCCTGTAGGA‑GCGGGt < 2:613526/150‑1 (MQ=255) gATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTT‑CCTGTGCCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACAAGGTTCCTGTAGGA‑GCGGGtt < 1:3050452/150‑1 (MQ=255) gCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGACAACCCCGGCCACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTT‑CCTGTGCCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACAAGGTTCCTGTAGGA‑GCGGGTTTAccc < 2:2231241/150‑1 (MQ=255) tgatgaCCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTT‑CCTGTGCCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACAGGAACCTTGTAGGA‑GCGGGTTTACCcgc < 2:272561/150‑1 (MQ=37) tgatgaCCGACGCACGCTGAAACTGCTGCCTGTATCACGAAAACCCCGGCCACTGT‑GCCGGGG‑TATTTTTTTGGGGGTATTTTT‑CCTGTGCCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACAAGGTTCCTGTAGGA‑GCGGGTTTACCcgc < 2:3358492/150‑1 (MQ=255) gatgaCCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTT‑CCTGTGCCGGCCTCTTCGC‑GGGTAAAACCGCGCCGACAAGGTTCCGGTAGGA‑GCGGGGTTTACcgcg > 2:3832093/1‑150 (MQ=255) ccTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTT‑CCTGTGCCGGCCTCTTCGC‑GGGTAATCCCGCTCCTACAAGGTTCCTGGAGGT‑GCGGGTTTTCCCGCGAagag > 2:3363419/1‑150 (MQ=255) ccTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTT‑CCTGTGCCGGCCTCTTCGC‑GGGGGAACCCGCGCCAACAAGGGTGCGGTAGGA‑GCGGGGTTTCCCCCGCagag > 1:2253098/1‑150 (MQ=255) ccTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑TTTTTTTGTGGGGGTATTTTT‑CCAGTGCCGGCCTCTTCGC‑GGGGAAAACCCCAACAACGAAGTTACGGGAGGG‑GCGGGTGTTCCcgcgtaaag > 1:2252846/1‑145 (MQ=255) cTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTT‑CCTGTGCCGGCCTCTTCGC‑GGGTGAACCCCCGCCGACAAGGTTCCGGTAGGT‑GCGGGGTTTCCCGCGGAGAgg > 1:714139/1‑150 (MQ=255) cTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTT‑CCTGTGCCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACAAGGTTCCGGTAGGG‑GCGGGTTTACCCGCGAAGAgg > 2:713829/1‑150 (MQ=255) gAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTT‑CCTGTGCCGGCCTCTTCGC‑GGGTAAAACCGCGCCTACAAGGTTCCTGGAGGA‑GCGGGTTTACCCGCGCAGAGGCCAGCGCC‑Gaa > 2:1746550/1‑150 (MQ=38) aCTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTT‑CCTGTGCCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACAAGGTTCCTGTAGGA‑GCGGGTTTACCCGCGAAGAGGCCAGCACA‑Gaaaaa < 2:2560407/150‑1 (MQ=255) aCTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTGT‑CCTGTGCCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACAAGGTTCCTGTAGGA‑GCGGGTTTACCCGCGAAGAGGCCAGCACA‑Gaaaaa < 2:2635085/150‑1 (MQ=255) aCTGCTGCCTGTCGCACGAAACCCCCGGCCAGTGT‑GCGGGGT‑TTTTTTTTGGGGGGTATTTTT‑CGGGGGCCGGCCTCTGGGC‑GGGTAAACCCGCTCCTCCCCGGTTCCTGTAGGA‑GCGGGTTTACCCGCGAAGAGGCCAGCACA‑Gaaaaa < 2:3810503/150‑1 (MQ=25) tgcCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTT‑CCTGTGCCGGCCTCTTCGC‑GGGGTAACCCCCTCCGACAAGGTTACTGTAGGA‑GCGGGTTTTCCCGCGGAGAGGCCAGCCCC‑Gacaaataaaa > 2:245371/1‑150 (MQ=255) ccTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTT‑CCTGTGCCGGCCTCTTAGC‑GGGTTAACACCCGCCGACAAGGTTGCAGGTGGAGGGGGGTTTACCC‑CGAAGGGGGCCGCACA‑Cgcaaataaaaat > 1:1793927/1‑150 (MQ=255) ccTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTT‑CCTGTGCCGGCCTATTCGC‑GGGTAAACCCGCTCCTACCAGGTTCCGGTAGGA‑GCGGGTTTACCCGCGTAGTGGCCAGCAAA‑Gaaaaataaaaat > 2:364766/1‑150 (MQ=38) tGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTT‑CCTGTGCCGGCCTCTTAGCGGGGTATACCC‑CGCCCACCACGTTGGGGGTGGG‑GGGGGGGTTCCCGCGGAGAGGCCCGCCCA‑Gcaaaaaaaaaaaaa > 1:3129213/1‑147 (MQ=255) tGTTTCACGAAAACCCCGGCCACGGT‑GCCGGGG‑TTTTTTTTGGGGGGTATTTTT‑CCGGTGCCGGCCTCTCCGC‑GGGTAAACCCGCCCCACCCCGGTTCCTGTAGGA‑GCGGGTTTACCCGCGAAGAGGCCAGCACA‑GAAAAATAAAAATAc < 2:856846/150‑1 (MQ=37) tttCACGAAAACCCCGGCCACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTT‑CCTGTGCCGGCCTCTTCGC‑GGGTAAAACCGCACCTACAAGGTTGCTGTATGA‑GCGGGTTTTCCCGCGAAGAGGCCAGCAAA‑GAAAAATAAAAATACCt > 2:4223411/1‑150 (MQ=38) ccaaaaaaaaaCCCCGG‑CACAGTGGCCGGGGTTTTTTTTTTGGTGGTATTTTT‑CCTGTGCCGGCCTCTTCGC‑GGGTAAACCCGCGCCTTCAAGGTTCCGGTAGGG‑GCGGGGTTACCCGCGAAGAGGCCAGCACA‑GGAAAATAAAAATAcc > 2:2233506/8‑150 (MQ=21) tCACGAAAACCCCGGCCACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTT‑CCTGTGCCGGCCTCTTCGC‑GGGTAAACCCGCACCTACAAAGTTCCGGTAGGA‑GCGGGTGTACCCCCCCACAGGCCCGCAAC‑GAAAAATAAAAATAccagg > 2:789220/1‑147 (MQ=37) aCGAAAACCCCGGCCACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTT‑CCTGTGCCGGCCTCTTCGC‑GGGTAAAACCCCTCCGACCAGGTTGCGGGTGGG‑GCGGGGTTAACCGCGCAGCGGCCAGCACC‑GAAAAATAAAAAAACCTGCtt > 2:4159108/1‑150 (MQ=255) aaCCCCGGCCACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTT‑CCTGTGCCGGCCTCGTCGC‑GGGGAAACCCGCACCCACAAGGGTCCGGGAGGC‑GCGGGGGTACCCGCGCAGAGGCCCCCCCC‑GCAAAAAAAAAAAACCGGATTTTCaa > 2:1956709/1‑150 (MQ=255) ccccGGCCCCTGT‑GCGGGTG‑TTTTTTTTTGGGGGTATTTTT‑CCTGTGCCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACACGGTTCCTTTTGGA‑GCGGGTTTACCCGCGAAGAGGCCAGCACA‑GAAAAATAAAAATACCTGATTTTCaaaa < 1:734189/150‑1 (MQ=37) aCTGT‑GCCGGGG‑ATTTTTTTTGGGGGTATTTTT‑CCTGTGCCGGCCTCTTCGC‑GGGTAAAACCCCTCCTACAAGGGTGCTGTAGGG‑GCGGGTTTTCCCGCGACGAGGCCAGCACA‑GAAAAAAAAAAATACCTGATTTTGAAAAAATAGAta > 2:2791069/1‑149 (MQ=37) cTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTT‑CCTGTGCCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACAAGGTTCCTGTAGGA‑GCGGGTTTACCCGCGAAGAGGCCAGCACA‑GAAAAATAAAAATACCTGATTTTCAAAAAATAGATCt < 2:3381908/150‑1 (MQ=255) gttttttttttGGGGTTATTTTT‑CCTGTGCCGGCCTCTTCGC‑GGTTAAACCCGCTCCTACACGGTTCCTGTAGGA‑GCGGGTTTACCCGCGAAGAGGCCAGCACA‑GAAAAATAAAAATACCTGATTTTCAAAAAATAGATCTGAAAAGTTc < 2:429023/148‑1 (MQ=255) ttttttttttGGGGTTATTTTT‑CCGGTGCCGGCCTCTTCGC‑GGTTAAACCCGCTCCTACAAGGTTCCTGTCGGA‑GCGGGTTAACCCGCGAAGAGGCCAGCACA‑GAAAAATAAAAATACCTGATTTTCAAAAAATAGATCTGAAAAGTTCt < 2:1877266/149‑1 (MQ=38) ttttttGGGGGTTTTTTTCCCGGTGCCGCCCTCTTCGC‑GGGAACCCCCGCTCCTACACGGTACGTGTAGGA‑GCGGGTTCACCCGCGAAGAGGCCAGCACA‑GAAAAATAAAAATACCTGATTTTCAAAAAATAGATCTGAAAAGTTCtaat < 1:2702163/150‑1 (MQ=37) tGGGGGTATTTTC‑CCTGTGCCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACAAGGTTCCTGTAGGA‑GCGGTTTTACCCGCGAAGAGGCCAGCACA‑GAAAAATAAAAATACCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACa < 2:1028763/150‑1 (MQ=255) ggTATTTTT‑CCTGTGCCGGCCTCTTCGC‑GGGTTAACCCGCTCCTACAAGGTTGCTGGAGGA‑GCGGGTTTAACCGCGGAGGGGCCAGCACC‑GGAAAATAAAAATACCTGTTTTTAAAAAAATAGGTATTAAAAGTTGTAATAAAACAGGaa > 2:3510506/1‑150 (MQ=25) ggTATTTTT‑CCTGTGCCGGCCTCTTCGC‑GGGTAAAGCCGCTCCTACAATGTTGCTGTAGGT‑GCGGGTTTAGCCGCGTAGAGGCCAGCACA‑GAAAAATTAAAATACCTGATTTTGTAAAAATAGATCTGAAAAGTTGTAATAAAAGAGGaa > 2:1441133/1‑150 (MQ=25) aTTTTT‑CCTGTGCCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACAAGGTTCCTGTAGGA‑GCGGTTTTACCCGCGAAGAGGCCAGCACA‑GAAAAATAAAAATACCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGAAAtt < 2:3075426/150‑1 (MQ=255) aTTTTT‑CCTGTGCCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACAAGGTTCCTGTAGGA‑GCGGGTTTACCCGCGAAGAGGCCAGCACA‑GAAAAATAAAAATACCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGAAAtt < 2:3075433/150‑1 (MQ=255) cgtgtgCCGCCCTCTGGGG‑GGGTAACCCCGCTCCTCCACGGTTCCTGTTGGC‑GCGGTTTTACCCGCGAAGAGGCCAGCACA‑GAAAAATAAAAATACCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGAAATTATCCtt < 1:3216641/148‑1 (MQ=255) ttCGC‑GGGTAAACCCGCGCCTACAAGGTTCCTGTAGGA‑GCGGGTTTACCCGCGAAGAGGCCAGCACA‑GAAAAATAAAAATACCTGATTTTCAAAAAATAGTTCTGAAAAGTTCTAATAAAACAGGAAATTATCCTTTACAGGCATCCTGt > 2:1183987/1‑150 (MQ=255) cgc‑gGGTAAACCCGCTCCTACAAGGTTCCTGTAGGA‑GCGGGTTTACCCGCGAAGAGGCCAGCACA‑GAAAAATAAAAATACCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGAAATTATCCTTTACAGGCATCCTGttt > 2:3702639/1‑150 (MQ=255) gc‑gGGTAAACCCGCTCCTACACGGTTCCTGTAGGA‑GCGGGTTTACCCGCGAAGAGGCCAGCACA‑GAAAAATAAAAATACCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGAAATTATCCTTTACAGGCATCCTGTTTc < 2:77860/150‑1 (MQ=255) gc‑gGGTAAACCCGCTCCTACAAGGTTCCTGTAGGA‑GCGGGTTTACCCGCGAAGAGGCCAGCACA‑GAAAAATAAAAATACCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAGTACAGGAAATTATCCTTTACAGGCATCCTGTTTc > 2:3148245/1‑150 (MQ=255) gc‑gGGAAAACCCGCTCCTACAAGGTTCCTGTTGGA‑GCGGGTTTACCCGCGAAGAGGCCAGCACA‑GAAAAATAAAAATACCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGAAATTATCCTTTACAGGCATCCTGTTTc < 1:713829/150‑1 (MQ=255) ggggttcaaCCCGATCCTACACGGTTCCTGTTGGT‑GGGTGTTTACCCGCGAAGAGGCCAGCACA‑GAAAAATAAAAATACCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGAAATTATCCTTTACAGGCATCCTGTTTc < 1:2790275/143‑1 (MQ=255) gtaatgccGCTCCTACAAGGTTCGTGTAGGA‑GCGGGTTTACCCGCGAAGAGGCCAGCACA‑GAAAAATAAAAATACCTGATTTTCAAAAATTAGATCTGAATAGTTCTAATAATACAGGTAATTATCGTTTACAGGCATGCTGTTTCGGct > 2:2341787/7‑149 (MQ=38) aaaCCCGCTCCTACAAGGTTCCTGTAGGA‑GCGGGTTTACCCGCGAAGAGGCCAGCACA‑GAAAAATAAAAATACCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGAAATTATCCTTTACAGGCATCCTGTTTCGGCACt > 2:3899452/1‑150 (MQ=255) aaCCCGCTCCTACAAGGTTCCTGTAGGA‑GCGGGTTTACCCGCGAAGAGGCCAGCACA‑GAAAAATAAAAATACCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGAAATTATCCTTTACAGGCATCCTGTTTCGGCACTa > 1:1241004/1‑150 (MQ=255) cccGCTCCTACAGGAACCTTGTAGGA‑GCGGGTTTACCCGCGAAGAGGCCAGCACA‑GAAAAATAAAAATACCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGAAATTATCCTTTACAGGCATCCTGTTTCGGCACTAtc > 1:1961007/1‑150 (MQ=38) ccGCTCCTACAGGAACCTTGTAGGA‑GCGGGTTTACCCGCGAAGAGGCCAGCACA‑GAAAAATAAAAATACCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGAAATTATCCTTTACAGGCATCCTGTTTCGGCACTAtct > 1:3496614/1‑150 (MQ=38) ccGCTCCTACAGGAACCTTGTAGGA‑GCGGGTTTACCCGCGAAGAGGCCAGCACA‑GAAAAATAAAAATACCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGAAATTATCCTTTACAGGCATCCTGTTTCGGCACTAtct > 2:1238897/1‑150 (MQ=38) ccGCTCCTACAAGGTTCCTGTAGGA‑GCGGGTTTACCCGCGAAGAGGCCAGCACAGGAAAAATAAAAATACCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGAAATTATCCTTTACAGGCATCCTGTTTCGGCACTAtc > 1:1363848/1‑150 (MQ=255) ccGCTCCTACAAGGTTCCTGTAGGA‑GCGGGTTTACCCGCGAAGAGGCCAGCACA‑GAAAAATAAAAATACCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGAAATTATCCTTTACAGGCATCCTGTTTCGGCACTAtct > 1:1156226/1‑150 (MQ=255) ccGCTCCTACAAGGTTCCTGTAGGA‑GCGGGTTTACCCGCGAAGAGGCCAGCACA‑GAAAAATAAAAATACCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGAAATTATCCTTTACAGGCATCCTGTTTCGGCACTAtct > 1:4346146/1‑150 (MQ=255) ccGCTCCTACAAGGTTCCTGTAGGA‑GCGGGTTTACCCGCGAAGAGGCCAGCACA‑GAAAAATAAAAATACCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGAAATTATCCTTTACAGGCATCCTGTTTCGGCACTAtct > 2:2525492/1‑150 (MQ=255) ccGCTCCTACAAGGTTCCTGTAGGA‑GCGGGTTTACCCGCGAAGAGGCCAGCACA‑GAAAAATAAAAATACCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGAAATTATCCTTTACAGGCATCCTGTTTCGGCACTAtct > 2:378955/1‑150 (MQ=255) cGCTCCTACAAGGTTCCTGTAGGA‑GCGGGTTTACCCGCGAAGAGGCCAGCACA‑GAAAAATAAAAATACCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGAAATTATCCTTTACAGGCATCCTGTTTCGGCACTAtctt > 2:2354765/1‑150 (MQ=255) gcacacacacGGTCCCGGTCGGC‑GGGGGTTTCCCCGCGAAGAGGCCAGCACA‑GAAAAATAAAAATACCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGAAATTATCCTTTACAGGCATCCTGTTTCGGCACTAtcttc < 1:3832093/144‑1 (MQ=255) gCTCCTACACGGTTCCTGTAGGC‑GCGGGTTTACCCGCGAAGAGGCCAGCACA‑GAAAAATAAAAATACCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGAAATTATCCTTTACAGGCATCCTGTTTCGGCACTAtcttc < 2:1331475/150‑1 (MQ=255) gCTCCTACACGGTACGTGTAGTC‑GGGGGTTTCCCCGCGAAGAGGCCAGCACA‑GAAAAATAAAAATACCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGAAATTATCCTTTACAGGCATCCTGTTTCGGCACTAtcttc < 1:3937322/150‑1 (MQ=255) gCTCCTACAAGGTTCCTGTAGGC‑GCGGGTTTACCCGCGAAGAGGCCAGCACA‑GAAAAATAAAAATACCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGAAATTATCCTTTACAGGCATCCTGTTTCGGCACTAtcttc < 2:2814860/150‑1 (MQ=255) gCTCCTACAAGGTTCCTGTAGGA‑GCGGGTTTACCCGCGAAGAGGCCAGCACA‑GAAAAATAAAAATACCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGAAATTATCCTTTACAGGCATCCTGTTTCGGCACTAtcttc > 1:1556563/1‑150 (MQ=255) cTACAAGGTTCCTGTAGGA‑GCGGGTTTACCCGCGAAGAGGCCAGCACA‑GAAAAATAAAAATACCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGAAATTATCCTTTACAGGCATCCTGTTTCGGCACTATCTTCTGAt > 2:643587/1‑150 (MQ=255) tACAAGGTTCCTGTAGGA‑GCGGGTTTACCCGCGAAGAGGCCAGCACA‑GAAAAATAAAAATACCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGAAATTATCCTTTACAGGCATCCTGTTTCGGCACTATCTTCTGAtt > 1:1209208/1‑150 (MQ=255) tACAAGGTTCCTGTAGGA‑GCGGGTTTACCCGCGAAGAGGCCAGCACA‑GAAAAATAAAAATACCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGAAATTATCCTTTACAGGCATCCTGTTTCGGCACTATCTTCTGAtt > 1:266595/1‑150 (MQ=255) tACAAGGTTCCTGTAGGA‑GCGGGTTTACCCGCGAAGAGGCCAGCACA‑GAAAAATAAAAATACCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGAAATTATCCTTTACAGGCATCCTGTTTCGGCACTATCTTCTGAta > 2:2952856/1‑149 (MQ=255) aCAAGGTTCCTGTAGGA‑GCGGGTTTACCCGCGAAGAGGCCAGCACA‑GAAAAATAAAAATACCTGATTTTCAAAAAATAGATCTGAAAAGTGCTAATAAAACAGGAAATTATCCTTTACAGGCATCCTGTTTCGGCACTATCTTATGATTc > 1:3136085/1‑150 (MQ=255) cAAGGTTCCTGTAGGA‑GCGGGTTTACCCGCGAAGAGGCCAGCACA‑GAAAAATAAAAATACCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGAAATTATCCTTTACAGGCATCCTGTTTCGGCACTATCTTCTGATTCa > 1:1119233/1‑150 (MQ=255) cAAGGTTCCTGTAGGA‑GCGGGTTTACCCGCGAAGAGGCCAGCACA‑GAAAAATAAAAATACCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGAAATTATCCTTTACAGGCATCCTGTTTCGGCACTATCTTCTGATTCa > 2:2285089/1‑150 (MQ=255) aaGGTTCCTGTAGGA‑GCGGGTTTACCCGCGAAGAGGCCAGCACA‑GAAAAATAAAAATACCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGAAATTATCCTTTACAGGCATCCTGTTTCGGCACTATCTTCTGATTCAg > 2:3241215/1‑150 (MQ=255) ggTTCCTGTAGGA‑GCGGGTTTACCCGCGAAGAGGCCAGCACA‑GAAAAATAAAAATACCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGAAATTATCCTTTACAGGCATCCTGTTTCGGCACTATCTTCTGATTCAGgc > 2:3757116/1‑150 (MQ=255) ggTTCCTGTAGGA‑GCGGGTTTACCCGCGAAGAGGCCAGCACA‑GAAAAATAAAAATACCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGAAATTATCCTTTACAGGCATCCTGTTTCGGCACTATCTTCTGATTCAGgc > 2:2462501/1‑150 (MQ=255) ggTTCCTGTAGGA‑GCGGGTTTACCCGCGAAGAGGCCAGCACA‑GAAAAATAAAAATACCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGAAATCATCCTTTACAGGCATCCTGTTTCGGCACTATCTTCTGATTCAGgc > 2:2858249/1‑150 (MQ=255) tCCTTTGGGA‑GGGGTTTTACCCGCGAAGAGGCCAGCACA‑GAAAAATAAAAATACCTGATTTTCAAAAAATAGATCTGCAAAGTTCTAATAAAACAGGAAATTATCCTTTACAGGCATCCTGTTTCGGCACTATCTTCTGATTCAGgccgc < 1:3998760/150‑1 (MQ=255) tCCTGTAGGA‑GCGGGTTTACCCGCGAAGAGGCCAGCACA‑GAAAAATAAAAATACCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGAAATTATCCTTTACAGGCATCCTGTTTCGGCACTATCTTCTGATTCAGgccgc < 2:714139/150‑1 (MQ=255) cTGTAGGA‑GCGGGTTTACCCGCGAAGAGGCCAGCACA‑GAAAAATAAAAATACCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGAAATTATCCTTTACAGGCATCCTGTTTCGGCACTATCTTCTGATTCAGGCCGCca > 1:893569/1‑150 (MQ=255) | CCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑TTTTTTTTTGGGGGTATTTTT‑CCTGTGCCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACAAGGTTCCTGTAGGA‑GCGGGTTTACCCGCGAAGAGGCCAGCACA‑GAAAAATAAAAATACCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGAAATTATCCTTTACAGGCATCCTGTTTCGGCACTATCTTCTGATTCAGGCCGCCA > NC_002947/955010‑955307 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |