| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,639,618 | G→T | 12.3% | intergenic (‑166/‑145) | czcR‑III ← / → PP_1439 | response regulator/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,639,618 | 0 | G | T | 12.3% | 462.7 / 47.5 | 161 | intergenic (‑166/‑145) | czcR‑III/PP_1439 | response regulator/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (80/61); new base T (16/4); total (96/65) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.38e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.39e-01 | |||||||||||
Only 100 of 167 total aligned reads displayed.
TGAAAGGGGACGATTCTTGACCCTGTAGTGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACGAT > NC_002947/1639469‑1639764 | tGAAAGGGGACGATTCTTGACCCTGTAGTGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCcgcg > 1:4090677/1‑150 (MQ=255)tGAAAGGGGACGATTCTTGACCCTGTAGTGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCcgcg > 1:3175565/1‑150 (MQ=255) gAAAGGGGACGATTCTTGACCCTGTAGTGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCgcgc < 1:3810211/150‑1 (MQ=255) gAAAGGGGACGATTCTTGACCCTGTAGTGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCgcgc < 1:2026801/150‑1 (MQ=255) gAAAGGGGACGATTCTTGACCCTGTAGTGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCgcgc < 1:3978357/150‑1 (MQ=255) aaGGGGACGATTCTTGACCCTGTAGTGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCt > 2:1517516/1‑150 (MQ=255) gggACGATTCTTGACCCTGTAGTGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTa < 2:1929138/150‑1 (MQ=255) gATTCTTGACCCTGTAGTGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAg > 1:1115029/1‑146 (MQ=255) gATTCTTGACCCTGTAGTGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAg < 2:1115029/146‑1 (MQ=255) gATTCTTGACCCTGTAGTGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTGATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAAc < 2:1242183/150‑1 (MQ=255) ttCTTGACCCTGTAGTGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACgg < 2:2364362/150‑1 (MQ=255) ttCTTGACCCTGTAGTGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACgg < 2:4214247/150‑1 (MQ=255) ttCTTGACCCTGTAGTGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACgg < 2:754079/150‑1 (MQ=255) ttCTTGACCCTGTAGTGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACgg < 2:1854742/150‑1 (MQ=255) ttCTTGACCCTGTAGTGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACgg < 2:2162416/150‑1 (MQ=255) ttCTTGACCCTGTAGTGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACgg < 1:864221/150‑1 (MQ=255) tCTTGACCCTGTAGTGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACggg < 2:2119452/150‑1 (MQ=255) ttGACCCTGTAGTGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGCACGGGtt > 1:2787630/1‑150 (MQ=255) aCCCTGTAGTGACATCAGGGTCAAGCGCCCCAATGTTCCGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGATCGGGTTT‑Ac < 2:4291963/150‑1 (MQ=255) ccTGTAGTGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGGGTAAACCCGTTCCTACAGGCGCGGGTTT‑Actc < 1:1951785/150‑3 (MQ=37) ccTGTAGTGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑Accc > 2:2750387/1‑150 (MQ=255) gTAGTGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCcgcg > 1:2589480/1‑150 (MQ=255) gTAGTGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCATGAGCTGCAGATAACGGAAATGTAATTCTGCTGTTAACTCGCAGTCTCTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGCTTA‑AACcgcg > 2:2273244/1‑150 (MQ=255) tAGTGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGa > 2:4089511/1‑150 (MQ=255) gACATCAGTGTCAATCGCCCCAATGTGACGGCATGAAAAAAGGCCTGCGGTGCATATATCGGTTTTGTCATTCTGCTGTTATCTTGCTGTCTGTTCGGGCCTCTTCGCGAGTTAACCAGCTCCTGTAGGAACGGGTTT‑ACCCGCGTagag < 2:3225944/150‑1 (MQ=255) gACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAagag < 1:3582816/150‑1 (MQ=255) tacAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGcc > 1:2826018/3‑150 (MQ=255) tccgggTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGccc < 1:1180560/147‑1 (MQ=255) gcgcCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCca > 1:4018516/1‑150 (MQ=255) cccAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTGTTGGCGAGTTAACCCGCGCCTGTTGGTACGGGTTT‑AAACGCGTAGAGGCCCGAACAGTGaacaca > 1:1234386/1‑150 (MQ=255) cccAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑TCCCGCGAAGAGGCCCGAACATTCcacaca > 2:2853978/1‑150 (MQ=255) cAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAg < 2:3760627/150‑1 (MQ=255) aTGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGTAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGc < 2:4180089/150‑1 (MQ=255) gCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGc > 1:3533637/1‑150 (MQ=255) aTGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAg > 1:3692157/1‑150 (MQ=255) aTGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAg > 2:260770/1‑150 (MQ=255) aaaaGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGTCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTg > 2:3968754/1‑150 (MQ=255) tGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATcccc > 2:2410350/1‑150 (MQ=255) aGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCAcc > 2:3099190/1‑150 (MQ=255) tAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTg > 2:4189315/1‑150 (MQ=255) tAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCCCGCCGGTAGGAACGGGTTT‑ACCCCCCAAGAGGCCCCAACAGTCCACACAAGGCCACAATGCAGGACTGTAATCCCCGCCACACCGTg > 1:1718033/1‑150 (MQ=255) aCGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGGTT‑AACCCCGAAGAGGCCCGAACAGTCCACACAACGCCACAGTTCCGGTCGGTTATCCCCGCCTCAccgttgc > 1:3883564/1‑145 (MQ=37) ggATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGt > 1:2201103/1‑150 (MQ=255) aTTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTagccagcc < 2:3175565/150‑1 (MQ=255) ttCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCCCGCCGGTAGGGACGGGTTT‑ACCCCCGAAGAGGCCCGAACAGTCCACACAAGGCCACAATGCAGGACTGTAATACCCCCCTCACCATGCCGTTAGCCAGccc > 1:4365438/1‑150 (MQ=38) tgTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTa < 2:513705/150‑1 (MQ=255) tgTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTa > 1:1041039/1‑150 (MQ=255) ttATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCGGTAGGAACGGGTTT‑TCCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTCATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAgg > 2:2058032/1‑150 (MQ=255) gCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTCGGACCGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGGTAGCCAGCCCTCGCTAGGATGGCCg > 2:802160/1‑150 (MQ=255) gCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCg > 2:802169/1‑150 (MQ=255) ctgtctgtTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCgt < 1:2208319/150‑1 (MQ=255) tgtctgtTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCgtg > 2:4457995/1‑150 (MQ=255) tgtctgtTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGAAATCCCCGCCTCACCATGCCGATAGACAGCCCACGCTAGGATCGCCgtg > 2:4107280/1‑150 (MQ=255) gtctgtGCGGGCCTCTTCGCGAGAAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCgtgt < 2:29750/150‑1 (MQ=255) tgtgggggCCTCTTCGCGAGTAAACCCGCGCCTGTCGGACGGGGTTT‑ACCCGCGAATAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTg < 1:3243985/145‑1 (MQ=255) ggccggggCCACTTCGCGCTTAACCCCGCGCCTGTCTG‑ACGGGTTTAACCCGCCACGCGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCTTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTg < 1:966550/145‑1 (MQ=255) gtTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGa > 2:1362712/1‑150 (MQ=255) gtTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGa < 2:3287807/150‑1 (MQ=255) ttCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGAt > 2:3989010/1‑150 (MQ=255) tCGGGCCTCTTCGCGGGTAAACCCGTTCCTACAGGCGCGGGTTT‑ACTCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTCGGATGGCCGTGTCTGATc > 2:895095/1‑150 (MQ=25) cGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCg > 2:4027891/1‑150 (MQ=255) gggCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCgg < 2:490294/150‑1 (MQ=255) gCCTATTCGCTAGTAAACCCGCGCCGTTAGTAAGGGTTTT‑ACCCGCCAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGtt < 1:2462810/150‑1 (MQ=255) ccTCTTCGCGGGTAAACCCGTTCCTACAGGCGCGGGTTT‑ACTCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGtta > 1:1008657/1‑150 (MQ=25) ccTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGtta < 2:1567857/150‑1 (MQ=255) ccTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGtta > 2:4486729/1‑150 (MQ=255) tctTCGCGGGTAAACCCGTTCCTACAGGCGCGGGTTT‑ACTCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGttatt > 2:3298476/1‑150 (MQ=25) tctTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGttatt > 2:2931826/1‑150 (MQ=255) tctTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGttatt > 2:3081266/1‑150 (MQ=255) tctTCGCGAGCACCCCCGCGCCTGTCGGACGGGGTTT‑CCCCGCGAAGCGCCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGttatt < 1:831809/150‑1 (MQ=255) ctTCGCGTGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGATGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGttatta < 1:268618/150‑1 (MQ=255) ttCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTAc > 1:646806/1‑150 (MQ=255) tCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACg > 1:3980927/1‑150 (MQ=255) cgcgATTAACCCCGCGCCTTTAGTACGGGGTTT‑ACCCGCTAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGa < 1:511350/150‑1 (MQ=255) cgcgAGTAACCCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGa < 1:2139850/150‑1 (MQ=255) cgcgAGTAAACCCGCGCCTGTAGGAAGGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGa < 2:36926/150‑1 (MQ=255) cgcgAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGa < 2:1554493/150‑1 (MQ=255) gcgGGTAAACCCGTTCCTACAGGCGCGGGTTT‑ACTCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAg > 2:2188797/1‑150 (MQ=37) gcgGGTAAACCCGTTCCTACAGGCGCGGGTTT‑ACTCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCAGTTATTACGAg > 2:2188705/1‑150 (MQ=37) gcgAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCAcc > 1:160013/1‑97 (MQ=255) gcgAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAg > 2:611411/1‑150 (MQ=255) gcgAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAg < 2:933419/150‑1 (MQ=255) gcgAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAg > 1:2986178/1‑150 (MQ=255) gggTAAACCCGTTCCTACAGGCGCGGGTTT‑ACTCGCGAAGAGGCCCGAACAGTCCGCACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGc > 1:4179348/3‑150 (MQ=37) gggTAAACCCGTTCCTACAGGCGCGGGTTT‑ACTCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGc > 1:4109503/3‑150 (MQ=37) gggTAAACCCGTTCCTACAGGCGCGGGTTT‑ACTCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAAGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTGCGAGGc > 2:1639484/3‑150 (MQ=37) gggTAAACCCGTTCCTACAGGCGCGGGTTT‑ACTCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACAATGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGc > 1:2852497/3‑150 (MQ=37) gAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCTCCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGc > 2:3606107/1‑150 (MQ=255) gAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGc > 2:3493024/1‑150 (MQ=255) gAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGc > 2:1295246/1‑150 (MQ=255) ggTAAACCCGTTCCTACAGGCGCGGGTTT‑ACTCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCa > 1:1442949/2‑150 (MQ=37) attAAACCCGCGCCTTTCTGAACTGTTTT‑ACCCGCTAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCa < 1:1597083/148‑1 (MQ=255) gTAAACCCGTTCCTACAGGCGCGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCaa > 2:2499788/1‑150 (MQ=38) gTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGGCGTGTCTGATCGGTTATTACGAGGCaa > 1:3851882/1‑150 (MQ=255) tAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCaaa > 1:4383411/1‑150 (MQ=255) aCCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAacac > 1:3336601/1‑150 (MQ=255) aCCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAacac > 2:2796990/1‑150 (MQ=255) cccGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACg > 2:1767752/1‑150 (MQ=255) cccGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACg > 2:2773449/1‑150 (MQ=255) ccGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACGa < 2:2624553/150‑1 (MQ=255) | TGAAAGGGGACGATTCTTGACCCTGTAGTGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGGTTT‑ACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACGAT > NC_002947/1639469‑1639764 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |