| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,087,554 | C→T | 6.7% | intergenic (+298/‑297) | PP_1864 → / → PP_1865 | hypothetical protein/transposase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,087,554 | 0 | C | T | 6.7% | 286.4 / 8.8 | 104 | intergenic (+298/‑297) | PP_1864/PP_1865 | hypothetical protein/transposase |
| Reads supporting (aligned to +/- strand): ref base C (73/24); new base T (4/3); total (77/27) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.72e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 106 total aligned reads displayed.
GTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGG‑AGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACC‑‑CGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCCAAAAGCTCAAAAGCTTTAGCGCCGGTTCTGATCGGGCGTACAGTC > NC_002947/2087409‑2087698 | gTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGG‑AGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACg > 1:275987/1‑150 (MQ=34)gTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGG‑AGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACg > 1:275904/1‑150 (MQ=34) aCGGGCATCCATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGG‑AGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGTCGGCTTTGGTTACTTTGGCCACGAcc > 1:807429/1‑150 (MQ=255) aCGGGCATCCATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGG‑AGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGGCGGCTTTGGTTACTTTGGCCACGAcc > 1:807464/1‑150 (MQ=255) cttGGAGGCCCGACAGGCGGGGGGCCCCTGGTGGGGGCCGGCTGGGGGGCCCCCCCGGGACCACGCCCGGTGTGTGGGGACCCCGG‑AGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGTCGTGGCCAAAGt < 1:3783927/148‑1 (MQ=2) ggATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGG‑AGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAAc > 2:3582448/1‑150 (MQ=34) ggATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGG‑AGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAAc > 1:262297/1‑150 (MQ=34) gATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGTAGTGAGGGGACCCCGG‑AGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAAcc < 2:1558593/150‑1 (MQ=21) gCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGG‑AGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACc‑‑cgc > 1:1921401/1‑150 (MQ=34) cGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGG‑AGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACC‑‑CGCCgg > 1:2909552/1‑150 (MQ=34) cGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGG‑AGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACC‑‑CGCCgg > 1:646511/1‑150 (MQ=34) cGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGCAGCAACCCCGGAGTGAGGGGACCCCGC‑AGCGAAGCGTAGGGGCCGGATCAGGGGAGCCGACGGCTTGGGTTACTTTGGTCGTGGCCAAAGTAAccaaagcc < 2:1099166/150‑7 (MQ=11) aaGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGG‑AGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACC‑‑CGCCGGAAgg > 2:2276441/1‑150 (MQ=34) tGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGG‑AGCGTCGCGAAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACC‑‑CGCCGGAACGGCGGaa > 1:2110978/1‑150 (MQ=255) ggCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGG‑AGCGTAGCGTAGGGGCCGGAGGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTACCC‑‑CGCCGGAAGGGCGGAAAg > 2:1238858/1‑150 (MQ=21) ccAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGG‑AGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACC‑‑CGCCGGAAGGGCGGAAAGGTGa > 1:1735518/1‑150 (MQ=34) ccAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGG‑AGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACC‑‑CGCCGGAAGGGCGGAAAGGTGa > 2:2590571/1‑150 (MQ=34) ccAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGG‑AGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACC‑‑CGCCGGAAGGGCGGAAAGGTGa > 2:784860/1‑150 (MQ=34) cAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGG‑AGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACC‑‑CGCCGGAAGGGCGGAAAGGTGaa > 1:1610864/1‑150 (MQ=34) atcctGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGG‑AGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCCAAGTAACC‑‑CGCCGGAAGGGCGGACAGGTGAAt > 2:3822133/5‑150 (MQ=255) gggggggCCTGCCGCGCGTCCCCCCCTTGCGCTCGCCGGGGGTGGGGGGCCCGCGG‑CGGGTGGCGTTGGGGGGGGTTGGGGGGCGCCGAGGTCTTTGGTTTTTTGGGCCACGACAAAATTACCC‑‑CGCCGGAAGGGCGGAAAGGTGAATAg < 2:3162251/147‑1 (MQ=2) ttGGGGCCGGCCGCGCGGTCCTCCCGGGAGCACGCCGGGTGTGTGGGGCCCCCGG‑TGCGTTGCGTTGGGGCCGGTTGCGGGGCGCCGAGGGCTTTGGTTACTTTGGCCACGACAAATGTAACC‑‑CGCCGGAAGGGCGGAAAGGTGAATAgg < 2:356171/149‑1 (MQ=11) gggCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGG‑AGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACC‑‑CGCCGGAAGGGCGGAAAGGTGAATAGgcgc > 2:3384998/1‑150 (MQ=34) ggCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGG‑AGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACC‑‑CGCCGGAAGGGCGGAAAGGTGAATAGGCGcc > 1:1426821/1‑150 (MQ=34) gCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGG‑AGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACC‑‑CGCCGGAAGGGCGGAAAGGGGACTAGGCGccg > 2:502719/1‑149 (MQ=21) ccTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGG‑AGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACC‑‑CGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTg > 1:3593890/1‑150 (MQ=35) cTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGG‑AGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACC‑‑CGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGc > 2:130343/1‑150 (MQ=35) ctgcggGGTCCCCCGGGGAGCAAGCCCGGTGTGTGGGGCCCCCGG‑CGCGTCGGGTTGGGGCCGGATGCGGGGAGCCGAGGGCTTTGGTTCCTTGGGCCACGCCCAATGTAACC‑‑CGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATc < 2:4009047/148‑1 (MQ=11) cAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGG‑AGCGTAGCGTTGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGc < 2:1961141/97‑1 (MQ=37) cAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGG‑AGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGc > 1:1961141/1‑97 (MQ=37) aGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGG‑AGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACC‑‑CGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCg > 1:2525230/1‑150 (MQ=37) gggcgGTCCCCCGGGGAGCACGCGGGGTGTG‑GGGGTCCCCGGTGGGGTCGCTTGGGGGCGGTATGGGGGGAGCGGCGGGCTTTGGTTACTTTGCCAACGACAAATTTAACC‑‑CGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGt < 2:3531626/148‑1 (MQ=2) cgcgGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGG‑AGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACC‑‑CGCCGGAAGGGCGGCCAGGTGAATAGGCGCCTGCATCGtg > 1:4005610/1‑150 (MQ=255) cgcgGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGG‑AGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACC‑‑CGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGtg > 2:437336/1‑150 (MQ=37) gcgGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGG‑AGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACC‑‑CGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGtga > 2:3986829/1‑150 (MQ=37) gggTCCGCCGGGGTGCACCCCGGGTGTGGGGGGACCCGGG‑TGGGTTGGTTCGGGGCGGGTTGTGGGGTGCCGCCGGGTTTGTTTTGTTGGGCCACGACCAAAGTAACC‑‑CGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGtgaa < 2:3538484/149‑1 (MQ=2) ggTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGG‑AGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACC‑‑CGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGtgaat > 2:2557710/1‑150 (MQ=37) tcctccGGGGAGCAAGCCGGGAGTGAGGGGACCCCGG‑AGCGTAGCGTTGGGGCCGGATGAGGGGAGCCGACGGCTTTGTTTACTTTGGCCACGACAAAAGTACCC‑‑CGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGtgaatga < 2:2239208/150‑1 (MQ=11) tcctccCGGGAGCAAGCCCGGAGTGAGGGGACCCCGG‑AGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACC‑‑CGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGtgaatga > 2:3662782/1‑150 (MQ=37) tccCGGGAGCAAGCCCGGAGTGAGGGGACCCCGG‑AGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACC‑‑CGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGaatgaatg > 2:4126470/1‑150 (MQ=37) tccCGGGAGCAAGCCCGGAGTGAGGGGACCCCGG‑AGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACC‑‑CGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGaatgaatg > 2:886031/1‑150 (MQ=37) tccCGGGAGCAAGCCCGGAGTGAGGGGACCCCGG‑AGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACC‑‑CGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGaatgaatg > 1:530895/1‑150 (MQ=37) ccggggAGCACGCCGGTCGTGTGGGGACCCCGG‑AGCTTCGCTTTGGGGCGGTATGCGGGGAGCCGCGGGCTTGGGTTAGTTTGGCCACGACAAATTTAACC‑‑CGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGt < 2:1692777/147‑1 (MQ=2) ccGGGAGCAAGTCCGGAGTGAGGGGACCCCGG‑AGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACC‑‑CGCCGGAAGGGCGGACAGGTGAATAGGCGCCTGCATCGTGAATGAATGTc > 1:3955630/1‑150 (MQ=255) ccGGGAGCAAGCCCGGAGTGAGGGGACCCCGG‑AGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACC‑‑CGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTc > 2:1514378/1‑150 (MQ=37) ccGGGAGCAAGCCCGGAGTGAGGGGACCCCGG‑AGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACC‑‑CGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTc > 2:255014/1‑150 (MQ=37) ccGGGAGCAAGCCCGGAGTGAGGGGACCCCGG‑AGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACC‑‑CGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTc > 2:1514361/1‑150 (MQ=37) ccGGGAGCAAGCCCGGAGTGAGGGGACCCCGG‑AGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACC‑‑CGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTc > 1:4516723/1‑150 (MQ=37) gCAAGCCCGGAGTGAGGGGACCCCGG‑AGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACC‑‑CGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTg > 2:2118819/1‑150 (MQ=37) aaGCCCGGAGTGAGGGGACCCCGG‑AGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACC‑‑CGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTAATTGAt > 1:1523556/1‑150 (MQ=37) aGCCCGGAGTGAGGGGACCCCGG‑AGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACC‑‑CGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGAtg > 2:2844959/1‑150 (MQ=37) cccGGAGTGAGGGGACCCCGG‑AGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACC‑‑CGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGAtgtg > 2:3603607/1‑150 (MQ=38) ccGGAGTGAGGGGACCCCGG‑AGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACC‑‑CGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGa > 2:326432/1‑150 (MQ=39) ccGGAGTGAGGGGACCCCGG‑AGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACC‑‑CGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGa > 2:4132192/1‑150 (MQ=39) ccGGAGTGAGGGGACCCCGG‑AGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGAAACC‑‑CGCCGGAAGGGCGGAAACGTGAATAGTCGCCAGCATCGTCAATGAAAGACAACATGATGTGa > 1:3531044/1‑150 (MQ=14) gtggggACCCCGG‑AGCGTAGCTTTGGGGCCGGTTGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACC‑‑CGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGca < 2:1464478/148‑1 (MQ=255) ggggACCCCGG‑AGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACC‑‑CGCCGGAAGGGCGGAAAGGTGAATATGCGCCTGGATCGTGAATGAATGTCTACTTGATTTGAAATCGcaca > 1:1706359/1‑150 (MQ=255) ggggACCCCGG‑AGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACC‑‑CGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGcaca > 2:897721/1‑150 (MQ=39) ggggACCCCGG‑AGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACC‑‑CGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGcaca > 2:897730/1‑150 (MQ=39) ggggACCCCGG‑AGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACC‑‑CGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGcaca > 2:1269932/1‑150 (MQ=39) gggACCCCGG‑AGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACC‑‑CGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACaa > 1:1461345/1‑150 (MQ=39) gggACCCCGG‑AGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACC‑‑CGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACGTGATGTGAAAGCGCACaa > 1:1559801/1‑150 (MQ=255) ggACCCCGG‑AGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACTGCTTTGGTTACTTTGGCCACGACCAAAGTAACC‑‑CGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACAAGATGTGAAAGCTCACAAc > 2:298759/1‑150 (MQ=255) cccGG‑TGCGTCGCTTTGGGGCCGGATGTGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACAAAAGTAACC‑‑CGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCaa < 1:3704704/150‑1 (MQ=14) cccGG‑AGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACC‑‑CGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCaa > 2:2653020/1‑150 (MQ=39) cccGG‑AGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACC‑‑CGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTAATTTATGTTAAAGCGCACAACCCaa > 1:4157692/1‑150 (MQ=255) ccGG‑AGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACC‑‑CGCCGGAAGGGCGGCAAGGTGAATAGGCGCCGGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCaaa > 1:2996811/1‑150 (MQ=255) ccGG‑AGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACC‑‑CGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCaaa > 1:463591/1‑150 (MQ=39) cGG‑AGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACC‑‑CGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGACTGTCTACTTGATGTGAAAGCGCACAACCCAAAg > 2:3820656/1‑150 (MQ=255) tagcgtagGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACC‑‑CGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCcaaa > 2:3824923/1‑150 (MQ=255) tggtttggggCGGGTTGTGGGGAGCGGAGGGATTTGTTTATTTTGGCCAGTACAAAATTAACC‑‑CGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCcaaaa < 1:3302572/144‑1 (MQ=14) agcgtagGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACC‑‑CGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCcaaaa > 2:3557288/1‑150 (MQ=255) gcgtcgGGGCCGGATGCGGGGAGCCCCCGGCTTTGGTTCCTGTGGCCACGCCCAACGTACCC‑‑CGCCGGAAGGGCGGAAAGGGGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCcaaaag < 2:2023025/150‑1 (MQ=14) cgtagGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACC‑‑CGCCGGAAGGGAGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCcaaaagc > 1:3874102/1‑150 (MQ=255) gggCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACC‑‑CGCCGGAAGGGCGGACAGGTGAATAGGCGCCTGCATCGTGTATGAATTTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCcaaaagctcaaa > 1:2839369/1‑150 (MQ=255) ggCCGGTTGTGGGGAGCCGACGGCTTTGTTTATTTTGGCCACTACAAATGTAACC‑‑CGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCcaaaagctcaaaa < 2:1738995/150‑1 (MQ=14) cGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACC‑‑CGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCcaaaagctcaaaagct > 2:2504249/1‑150 (MQ=255) ggATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACC‑‑CGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCCAAAAGCTCAAAAGCtt > 2:1363014/1‑150 (MQ=255) gttgtggggAGCGGCGGGTTTTGTTTACTTGGGCCACGACCAATTTACCC‑‑CGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCCAAAAGCTCAAAAGCttt < 1:1189493/145‑1 (MQ=14) tggggggCGCGGCCGGCTTGGTTTACTTGGGCCACGACAAAATAACCC‑‑CGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCCAAAAGCTCAAAAGCTTTAg < 2:232989/147‑1 (MQ=14) tgcggggCGCCGACGGCTTTGTTTAATTTGCCCCCCACCAATGAAACC‑‑CGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCCAAAAGCTCAAAAGCTTTAg < 2:232996/147‑1 (MQ=14) ggggAGCCGACCGCTTTGGTAACTATGCCCACTACAACAGTCACC‑‑CGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAACGGCCCAAAAGCTCAAAAGCTTTAgcgc < 1:3365877/150‑1 (MQ=17) ggAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACC‑‑CGCCGGAAGGGCGGGAAGGTGAATAGGCGCCTGCATCGGGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCCAAAACCTCAAAAGCTTTAGCGCCg > 1:496372/1‑150 (MQ=255) ggAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACC‑‑CGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCCAAAAGCTCAAAAGCTTTAGCGCCg > 1:3638293/1‑150 (MQ=255) ccGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACC‑‑CGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCCAAAAGCTCAAAAGCTGTAGCGCCGGTTc > 1:2979502/1‑150 (MQ=255) ccGGTTTTGTTTCCTTTGGCCACTAACAATGTAACC‑‑CGCCGTAAGTGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATTTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCCAAAAGCTCAAAAGCTTTAGCGCCGGTTCTGa < 2:1577145/149‑1 (MQ=17) aCGGCTTTGGTTACTTTGGCCACGACCAAAGTAACC‑‑CGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGTATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCCAAAAGCTCAAAAGCTTTAGCGCCGGTTCTGa > 1:1858797/1‑150 (MQ=255) ggcgggTTACTTTGGTCGTGGCCAAAGTAACCAAAGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCCAAAAGCTCAAAAGCTTTAGCGCCGGTTCTGATc > 2:3315810/5‑150 (MQ=17) ttGGTTACTTTGGCCACGACCAAAGTAACC‑‑CGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCCAAAAGCTCAAAAGCTTTAGCGCCGGTTCTGATCGGGc < 2:2182649/150‑1 (MQ=255) ggTTACTTTGGTCGTGGCCAAAGTAACC‑‑CGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCCAAAAGCTCAAAAGCTTTAGCGCCGGTTCTGATCGGGCGt > 1:875711/1‑150 (MQ=255) ggTTACTTTGGTCGTGGCCAAAGTAACC‑‑CGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCCAAAAGCTCAAAAGCTTTAGCGCCGGTTCTGATCGGGCGt > 1:875716/1‑150 (MQ=255) gtgccTTGGGCCACGACCAAAGTACCC‑‑CGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCCAAAAGCTCAAAAGCTTTAGCGCCGGTTCTGATCGGGCGTa < 2:3233570/146‑1 (MQ=255) gTTACTTTGGCCACGACCAACGTAACC‑‑CGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCCAAAAGCTCAAAAGCTTTAGCGCCGGTTCTGATCGGGCGTa < 2:807429/150‑1 (MQ=255) gTTACTTTGGCCACGACCAAAGTAACC‑‑CGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCCAAAAGCTCAAAAGCTTTAGTGCCGGTTCTGATCGGGCGTa < 2:807464/150‑1 (MQ=255) ttACTTTGGCCACGACCAAAGTAACC‑‑CGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGAAGTGAAAGCGCACAACCCAAAGGCCCAAAAGCACAAAAGCTTTAGCGCCGGTTCTGATCGGGCGTAc > 1:1953419/1‑150 (MQ=255) tACTTTGGCCCCGACAAATTTAACC‑‑CGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCCAAAAGCTCAAAAGCTTTAGCGCCGGTTCTGATCGGGCGTACa < 1:2390132/150‑1 (MQ=255) tACTTTGGCCACGACCAAAGTAACC‑‑CGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCgc < 2:631992/64‑2 (MQ=25) tACTTTGGCCACGACCAAAGTAACC‑‑CGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCgc > 1:631992/1‑63 (MQ=25) aCTTTGGTCGTGGCCAAAGTAACC‑‑CGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCCAAAAGCTCAAAAGCTTTAGCGCCGGTTCTGATCGGGCGTACAg > 1:1168547/1‑150 (MQ=255) tttGGCCACGACCAAAGTAACC‑‑CGCCGGAAGGGCGGGAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCCAAAAGCTCAAAAGCTTTAGCGCCGGGTCTGATCGGGCGGACAGTc > 1:3442724/1‑150 (MQ=255) | GTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGG‑AGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACC‑‑CGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCCAAAAGCTCAAAAGCTTTAGCGCCGGTTCTGATCGGGCGTACAGTC > NC_002947/2087409‑2087698 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |