| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,580,393 | T→A | 11.7% | intergenic (+105/‑219) | PP_3158 → / → PP_5589 | hypothetical protein/rhs repeat‑associated core domain‑containing protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,580,393 | 0 | T | A | 11.7% | 488.4 / 17.1 | 191 | intergenic (+105/‑219) | PP_3158/PP_5589 | hypothetical protein/rhs repeat‑associated core domain‑containing protein |
| Reads supporting (aligned to +/- strand): ref base T (73/87); new base A (24/3); total (101/90) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.87e-05 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 204 total aligned reads displayed.
TACGCGCAGAGCCTGTTGCTGATGAACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTGAAGTACAATGGT > NC_002947/3580244‑3580542 | tACGCGCAGAGCCTGTTGCTGATGAACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACAGGCAt > 1:3973434/1‑150 (MQ=255) cgcAGAGCCTGTTGCTGATGAACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCAttttt < 1:2038705/150‑1 (MQ=255) cgcAGAGCCTGGTGCTGATGAACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCAttttt < 2:59746/150‑1 (MQ=255) gcAGAGCCTGTTGCTGATGAACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCCACAGGCAtttttt > 2:3488330/1‑149 (MQ=255) gcAGAGCCTGTTGCTGATGAACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTg > 2:4047294/1‑150 (MQ=255) cAGAGCCTGTTGCTGATGAACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGc < 2:3518307/150‑1 (MQ=255) cAGAGCCTGTTGCTGATGAACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGc < 2:1811742/150‑1 (MQ=255) cAGAGCCTGTTGCTGATGAACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGc < 1:2928894/150‑1 (MQ=255) agagCCTGTTGCTGATGAACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGGTGAAACAGGCAATTTTGcc > 1:3591484/1‑150 (MQ=255) gagCCTGTTGCTGATGAACTTCCTGCCGGTTCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCa < 1:255107/150‑1 (MQ=255) gagCCTGTTGCTGATGAACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCa < 2:2016850/150‑1 (MQ=255) ccTGTTGCTGATGAACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGtt < 1:3785482/150‑1 (MQ=255) cTGTTGCTGATGAACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCAAAAATGCCAGTTg < 1:344113/150‑1 (MQ=255) gTTGCTGATGAACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCa < 2:21739/150‑1 (MQ=255) gTTGCTGATGAACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCa < 1:1374117/150‑1 (MQ=255) tgatgaACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCGGCAACAGGCCATTTTGCCACTTGCAGCGAg > 1:3184013/1‑150 (MQ=255) tgatgaACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCGGCAACAGGCAATTTTGCCACTTGCAGCGAg > 1:212568/1‑150 (MQ=255) atgaACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCAGTTTTTCCAGGTGCAGCGCgtg > 1:2767788/1‑150 (MQ=255) gaACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACAGGCATTTTTTGCAGTTGCAGCGAGTGTa > 1:2008190/1‑150 (MQ=255) accTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGCGGATTGAGTTGATGAGTGTTCATGAGCGAGTCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGTAt < 1:4462694/148‑1 (MQ=255) aCTTCCTGCCGGTGCATTAAGAGGCCTCTGCCGCACGCCCTTTGCGAATTGCCCATAAATGAATGAGTTTTGTGTTGATGCGTGTTCATGAGCTAATCAACGTTTCGTCGGGCTGCAACTGGAATTTTTGCCTGTTGCAGCGAGTGTATg < 1:945663/150‑1 (MQ=255) cTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATAGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACGTGCAATTTTTCCACTTGCACCGAGAGTAAGa > 2:34453/1‑150 (MQ=255) ttCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAAATGGCAATTTTTACACTTGCAGCGAGGGTATggc > 2:1174807/1‑148 (MQ=255) ttCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCGGCAAAAGGCAATTTTTCCAGTTTCAGCGAGTGTATGAc > 1:109764/1‑150 (MQ=255) ttCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGAGTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCCTTTTTGCCAGGTGCAGCGAGTGTATGAc > 2:28959/1‑150 (MQ=255) cTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGTATGACCGc > 2:2724557/1‑150 (MQ=255) tGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGGGGGCACAGGCCTTTTTTCCAGGTTCAGCGAGTTTAttaaaacc > 1:409123/1‑143 (MQ=255) tGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACAGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGcc > 1:3628580/1‑150 (MQ=255) ccGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTTCAACTGGCCTTTTTGCCAGTTGCAGCGAGTGTATGACCGccga > 2:2419126/1‑148 (MQ=255) ccGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTa < 2:4325846/150‑1 (MQ=255) ccGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACAGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTa > 2:4344090/1‑150 (MQ=255) gTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCTAAAGGCCCATACATGAATGAGGATTGATTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGaa < 1:2534644/150‑1 (MQ=255) gTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGaa < 2:362820/150‑1 (MQ=255) gTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGGCTTTTTTCCAGTTTCAGCGAGTGTATGAAAGCCAAGAATTaaa > 1:615417/1‑150 (MQ=255) gTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCaa < 2:1684847/150‑1 (MQ=255) gTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCaa < 2:3229296/150‑1 (MQ=255) gTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACGGGAATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCaa < 1:4006482/150‑1 (MQ=255) tAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCCTTTTTGGCAGTTTCAGCGCGTGGATGTCAGCCGAGAATTAAAg > 1:3532022/1‑150 (MQ=255) tAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGTATTACAGCCAAGAATTCAAg > 1:3506229/1‑150 (MQ=255) aaGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGCGGATTGAGTTGAGGAGTGTTCTTGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAgg < 2:4173416/150‑1 (MQ=255) ccTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGTTTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATg < 1:2607375/150‑1 (MQ=255) ctctGCCGCACGCCCTTTGCGAAATGCCCATACATGATTGAGTATTGTTTTTTTGCGTTTTAATGAGCTAATCAACGTTTCGTCGGGCTGAAACTGGAATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATgg < 1:1943948/150‑1 (MQ=255) tctGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGGGAGGGTTTTTCAGCCGAGGATTAAAGGGCAATGgt > 1:4346729/1‑150 (MQ=255) ctGCCGCACGCCCTTGGCGAAATGCCCATACATGAATGAGGATTGAGTTTATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGCAATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGgtg < 2:3185925/150‑1 (MQ=255) tGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGGTGCAACAGGGATTTTTTGCAGTTTCCGCGAGTTTATGACAGCCAAGAATTAAAGGGAAAATgtgt > 1:1643315/1‑150 (MQ=255) cACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTctct < 2:4000035/150‑1 (MQ=255) aCGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGTGTTGATGTGTGTTCATGAGCGAATCAACTTTTCGTCGGGCTGCAACTGGCATTTTTGCCTGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTa < 1:632589/150‑1 (MQ=255) cGCCCTTTGCGAAATGCCCATACATGATTGTGTTTTGTGTTGATGAGTGTTCATGCGCGAATCAACTTTTCGTCGGGCTGCAACTGGAATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTaa < 1:2694886/150‑1 (MQ=255) cGCCCTTTGCGAAATGCCCATACATGAATGAGTATTGAGTTGTTGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGATTTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTaa < 1:3148705/150‑1 (MQ=255) gCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAg < 2:2671906/150‑1 (MQ=255) ccTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACAGGCAATTTTGCCAGTTGCAGCGAGTGTATGACAGCCGAGAATTCAAGGGAAAAGGTGTTATCTAAggg > 1:1025023/1‑149 (MQ=255) acTTTGCTAAATGCCAATACATCAATGATCATTCATTTGATGAGTTTTCATCACCGAATAAACTTTTCGTCGGGCTGAAACTGGCATTTTTGCCATTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGt < 1:1399638/149‑1 (MQ=255) cTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACAGGCATTTTTTCCAGTTTCAGCGAGTGTATTACAGCCAAGAATTAAAAGGAAAATGTGTTGTCTAAGGta > 1:2326056/1‑149 (MQ=255) tttGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCAGTTTTGCCAGTTGCAGCGAGTGTGTGACAGCCGAGAATTAAAGGGGAATGGTGTTCTCTAAGGtgg > 2:774651/1‑148 (MQ=255) tttGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACAGGCATTTTTGCCACTTTCAGCGAGTTTATTACAGCCAAGAAATAAATGGAAAATGTGTTATATAATGTCa > 1:4227967/1‑150 (MQ=255) tttGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCGGCAACATGCAATTTTTGCAGTTGCAGCGAGGGTTTTTCAGCCGAGAAATCAAGGGAAAATGTGTTGTGTAAgggta > 1:1230669/1‑147 (MQ=255) aaaTGCCCATACATGACTGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATc < 2:468603/150‑1 (MQ=255) gCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCGAGAATTAAAGGGAAATGGTGTTCTTTAAGGTCATTAATCGTGa > 2:3354386/1‑150 (MQ=255) aCATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACAGGCATTTTTTCCAGTTTCAACGCGTGTATTAAAGCCGAGAAATAAAGGGAAAAGTTGTTGTATAAGGTAATTAATAGTGaaaactt > 1:3911034/1‑146 (MQ=255) aCATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAAAAGGCCTTTTTTCCAGTTGCAGCGAGTGTATTAAAGCCAAGAAATAAAGGGAAATGGTTTTGTATAAGGTCATTAATAGTGaaaactt > 1:909317/1‑146 (MQ=255) cATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTc < 2:1273868/150‑1 (MQ=255) atgaatgaGGATTGGGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCACTTTCAGCGAGTGTATGACAGCCTAGAATTAAAGGGAAATGGTTTTATGTAATGTCATTAATAGTGaaaacttag > 2:2456010/1‑144 (MQ=255) atgaatgaGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACATGCATTTTTTACACTTTCAGCCAGTGTATGAAAGCCAAGAATTAAAGGGAAAAGGTGTTATATAATGTCATTAAACGTGAAAAGttag > 1:2617820/1‑148 (MQ=255) gaatgaGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCAGCAACATGCATTTTTGCCAGGTGCAGCGAGTGTATGACAGCCGAGAATACAAGGGAAAAGGTGGTGTCTAAGGTCATTAAAAGTGAAAAGTTCGCa > 2:2091212/1‑150 (MQ=255) aatgaGTATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCaa < 1:1304475/150‑1 (MQ=255) gATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCCTTTTTGCCAGTTGCAGCGAGTGTATGACACCCTAGAATTCAAGGGAAATGGTGTTATCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTac > 2:2596765/1‑150 (MQ=255) gATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACAGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAAAGGTGTTCTATAAGGTCATTAATCGTGAAACGTTCGCAAGCGTac > 2:3681746/1‑150 (MQ=255) ttGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCAATTTTTCCAGTTTCAGCCAGTGTATGAAAGCCTAGAAATCAAGGGAAATGGTGTTCTATAAGGTCATTAATAGTGAAAACTTCCAAAGCGTacac > 2:3896081/1‑150 (MQ=255) ttGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACAGGCAATTTTTCCAGTTGCAGCGAGTGTATGACACCCTATAATTCAAGGGAAATTGTGTTCTCTAAGGTCAATAATAGTGAAAAGTTAGCAAGCGTacac > 2:3585432/1‑150 (MQ=255) ttatgaGTGTTCTTGAGCTAATCAACGTTTGGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTa < 1:758409/148‑1 (MQ=255) atgaGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCCACGGGCAGTTTTGCCAGTTTCAGCGAGTGTATGACAGCCGAGAATTCAAGGGCAATTGTGTTGTCTAAGGTGATTAATAGTGTAACGTTCGCAAGCGTAACCGCCCTTCg > 2:2397376/1‑150 (MQ=255) gaGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACAGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCGAGAATTCAAGGGAACTGGTGTTCTCTAAGGTCATTAATCGTGAAAAGTTCGCAAGCGTACACGCCCAACGgc > 2:712798/1‑150 (MQ=255) aTGAGCTAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCTGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTg < 1:4047294/150‑1 (MQ=255) aTGAGCGAATCAACGTTTCGTCGGGCTGCAACAGGCAATTTTTCCCCTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTAAGTAAGGTCAATAAAAGGGTAAAGTTAGCAAGCCTACAAGCCCTACCGCGCGAGTTg > 2:4229509/1‑150 (MQ=255) tGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGGTTCAGCGAGTGTATGACACCCTAGAATTCAAGGGAAATGGTGTTGTCTAAGGTCATTAAACGTGAAACGTTAGCAATCGTACAAGCCCAAACGCGCGATTTgg > 2:3262175/1‑150 (MQ=255) tGAGCGAATCAACGTTTCGTCGGGCTGCAAAAGGCATTTTTTCCACTTTCAGCGAGTGTAATAAAGCCTAGAATTAAAGGGAAAAGGTGTTGTATAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCAAAGgcgcggttttg > 2:3020401/1‑143 (MQ=255) ttgCGAATCAACTTTTCGTCGGGCTGAAACTGGCATTTTTGCCTTTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTggg < 2:409123/148‑1 (MQ=255) gAGCGATTCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTggg < 2:2278290/150‑1 (MQ=255) attCAACGTTTCGTCGGGATGAAACTGTCTTTTTTGCCTGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGAt < 1:148189/148‑1 (MQ=255) aaTCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGAt < 1:3624211/150‑1 (MQ=255) aaTCAACGTTTCGTCGGGCTGCAACAGGCAATTTTTCCACTTGCAGCGAGTGTATGGAAGCCAAGAAATAAAAGGAAAATGTGGTATCTAAGGTCATTAAAAGGGAAACCTTCGCAAGCGTACACGCCCAACGGCGCGATTTGGGGTGAt > 1:1443907/1‑150 (MQ=255) aTCAACGTTTCGTCGGGCTGCAACTGGCATTTTTTCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTGAATGGAAAATGTGTTATCTAAGGTCATTAATCGTGAAAAGTTAGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATg > 2:4386518/1‑150 (MQ=255) aCGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCa < 2:1035612/150‑1 (MQ=255) cgGGCTGCAACTGGCTTTTTGGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCgt < 1:72024/150‑1 (MQ=255) gggCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCgtg > 2:2798013/1‑150 (MQ=255) cTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTg > 2:1062952/1‑150 (MQ=255) tGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTGa > 2:1348179/1‑150 (MQ=255) tGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTGa > 2:2835955/1‑150 (MQ=255) tGCAACTGGCAAAAATGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTGa > 1:2359547/1‑150 (MQ=255) tGCAACTGGCAAAAATGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTGa > 2:1635720/1‑150 (MQ=255) gattcTGGCTTTTTTGCTTTTTGTTGTGTGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTGaa < 1:2752493/146‑1 (MQ=255) gCAACTGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTGaa < 1:2217638/150‑1 (MQ=255) gCAACTGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTGaa < 1:4058537/150‑1 (MQ=255) gCAACTGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTGaa < 1:1350373/150‑1 (MQ=255) gCAACTGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTGaa < 2:1323915/150‑1 (MQ=255) gCAACTGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTGaa < 1:1010045/150‑1 (MQ=255) tGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTGAAGTACa > 2:3799923/1‑150 (MQ=255) tGGCATGTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTGAAGTACa > 2:2636025/1‑150 (MQ=255) ggCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTGAAGTACaa < 2:407181/150‑1 (MQ=255) aTTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATg > 2:2892931/1‑51 (MQ=255) | TACGCGCAGAGCCTGTTGCTGATGAACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTGAAGTACAATGGT > NC_002947/3580244‑3580542 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |