BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_002947	3,699,410	C→G	6.2%	S15T (AGC→ACC) ‡	PP_5595 ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_002947	3,699,410	0	C	G	6.2%	658.6 / 25.6	193	S15T (AGC→ACC) ‡	PP_5595	hypothetical protein
Reads supporting (aligned to +/- strand): ref base C (87/94); new base G (7/5); total (94/99)
Fisher's exact test for biased strand distribution p-value = 5.60e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.97e-01

Only 100 of 196 total aligned reads displayed.

GCATGTCCTTGCTTTCGTTGCTGCATGACCAGTTGATCGCTTCGGCGGGTATGTTGCTGTAGCTGTAACAGGTGTGCCGCTCCACCGGCGTCACGGCGTCGCTGGAGGAGCGAGTCAGCACATTGCAAGCTTCGGCCCAGACCTGGCCGCTGGCCAGG‑CTGGCAACCATCATCATCAAGGCAGGAACACGCATTTTCCACCTCCAGGGCACAAGGCCCTCGTCAGGTCTGAGCAGGCTTGTCGCGCCGGCGCATGGCTTTGGCGCGTTTTTCCAGGATCAGGTAGGTCACCACTGCCAA  >  NC_002947/3699261‑3699559

   tGTCCTTGCTTTCGTTGCTGCATGACCAGTTGATCGCTTCGGCGGGTATGTTGCTGTAGCTGTAACAGGTGTGCCGCTCCACCGGCGTCACGGCGTCGCTGGAGGAGCGAGTCAGCACATTGCAAGCTTCGGCCCAGACCTGGCCGCTgg                                                                                                                                                     <  1:2139901/150‑1 (MQ=255)

    gTCCTTGCTTTCGTTGCTGCATGACCAGTTGATCGCTTCGGCGGGTATGTTGCTGTAGCTGTAACAGGTGTGCCGCTCCACCGGCGTCACGGCGTCGCTGGAGGAGCGAGTCAGCACATTGCAAGCTTCGGCCCAGACCTGGCCGCTGGc                                                                                                                                                    <  1:673541/150‑1 (MQ=255)

      ccTTGCTTTCGTTGCTGCATGACCAGTTGATCGCTTCGGCGGGTATGTTGCTGTAGCTGTAACAGGTGTGCCGCTCCACCGGCGTCACGGCGTCGCTGGAGGAGCGAGTCAGCACATTGCAAGCTTCGGCCCAGACCTGGCCGCTGGCCa                                                                                                                                                  >  1:2714604/1‑150 (MQ=255)

       cTTGCTTTCGTTGCTGCATGACCAGTTGATCGCTTCGGCGGGTATGTTGCTGTAGCTGTAACAGGTGTGCCGCTCCACCGGCGTCACGGCGTCGCTGGAGGAGCGAGTCAGCACATTGCAAGCTTCGGCCCAGACCTGGCCGCTGGCCAg                                                                                                                                                 >  2:1287215/1‑150 (MQ=255)

       cTTGCTTTCGTTGCTGCATGACCAGTTGATCGCTTCGGCGGGTATGTTGCTGTAGCTGTAACAGGTGTGCCGCTCCACCGGCGTCACGGCGTCGCTGGAGGAGCGAGTCAGCACATTGCAAGCTTCGGCCCAGACCTGGCCGCTGGCCAg                                                                                                                                                 <  1:2091705/150‑1 (MQ=255)

        ttGCTTTCGTTGCTGCATGACCAGTTGATCGCTTCGGCGGGTATGTTGCTGTAGCTGTAACAGGTGTGCCGCTCCACCGGCGTCACGGCGTCGCTGGAGGAGCGAGTCAGCACATTGCAAGCTTCGGCCCAGACCTGGCCGCTGGCCAgg                                                                                                                                                >  2:4273472/1‑150 (MQ=255)

          gCTTTCGTTGCTGCATGACCAGTTGATCGCTTCGGCGGGTATGTTGCTGTAGCTGTAACAGGTGTGCCGCTCCACCGGCGTCACGGCGTCGCTGGAGGAGCGAGTCAGCACATTGCAAGCTTCGGCCCAGACCTGGCCGCTGGCCAGG‑Ct                                                                                                                                             >  2:1242529/1‑150 (MQ=255)

           cTTTCGTTGCTGCATGACCAGTTGATCGCTTCGGCGGGTATGTTGCTGTAGCTGTAACAGGTGTGCCGCTCCACCGGCGTCACGGCGTCGCTGGAGGAGCGAGTCAGCACATTGCAAGCTTCGGCCCAG‑CCTGGCCAGCGGCCAggtctg                                                                                                                                            <  2:606723/150‑5 (MQ=255)

            tttCGTTGCTGCATGACCAGTTGATCGCTTCGGCGGGTATGTTGCTGTAGCTGTAACAGGTGTGCCGCTCCACCGGCGTCACGGCGTCGCTGGAGGAGCGAGTCAGCACATTGCAAGCTTCGGCCCAGACCTGGCCGCTGGCCAGG‑CTgg                                                                                                                                           >  1:765793/1‑150 (MQ=255)

            tttCGTTGCTGCATGACCAGTTGATCGCTTCGGCGGGTATGTTGCTGTAGCTGTAACAGGTGTGCCGCTCCACCGGCGTCACGGCGTCGCTGGAGGAGCGAGTCAGCACATTGCAAGCTTCGGCCCAG‑CCTGGCCAGCGGCCAggtctgg                                                                                                                                           <  1:4429612/150‑6 (MQ=255)

             ttCGTTGCTGCATGACCAGTTGATCGCTTCGGCGGGTATGTTGCTGTAGCTGTAACAGGTGTGCCGCTCCACCGGCGTCACGGCGTCGCTGGAGGAGCGAGTCAGCACATTGCAAGCTTCGGCCCAGACCTGGCCGCTGGCCAGG‑CTGGc                                                                                                                                          >  1:1060445/1‑150 (MQ=255)

             ttCGTTGCTGCATGACCAGTTGATCGCTTCGGCGGGTATGTTGCTGTAGCTGTAACAGGTGTGCCGCTCCACCGGCGTCACGGCGTCGCTGGAGGAGCGAGTCAGCACATTGCAAGCTTCGGCCCAGACCTGGCCAGCGGCCAggtctgg                                                                                                                                           <  2:4505299/150‑6 (MQ=255)

                  tgctgcATGACCAGTTGATCGCTTCGGCGGGTATGTTGCTGTAGCTGTAACAGGTGTGCCGCTCCACCGGCGTCACGGCGTCGCTGGAGGAGCGAGTCAGCACATTGCAAGCTTCGGCCCAGACCTGGCCGCTGGCCAGG‑CTGGCAACca                                                                                                                                     <  1:3340499/150‑1 (MQ=255)

                    ctgcATGACCAGTTGATCGCTTCGGCGGGTATGTTGCTGTAGCTGTAACAGGTGTGCCGCTCCACCGGCGTCACGGCGTCGCTGGAGGAGCGAGTCAGCACATTGCAAGCTTCGGCCCAGACCTGGTCGCTGGCCAGG‑CTGGCAACcatc                                                                                                                                   <  2:2703050/150‑1 (MQ=255)

                        aTGACCAGTTGATCGCTTCGGCGGGTATGTTGCTGTAGCTGTAACAGGTGTGCCGCTCCACCGGCGTCACGGCGTCGCTGGAGGAGCGAGTCAGCACATTGCAAGCTTCGGCCCAGACCTGGCCGCTGGCCAGG‑CTGGCAACcatcatca                                                                                                                               >  2:1880110/1‑150 (MQ=255)

                         tGACCAGTTGATCGCTTCGGCGGGTATGTTGCTGTAGCTGTAACAGGTGTGCCGCTCCACCGGCGTCACGGCGTCGCTGGAGGAGCGAGTCAGCACATTGCAAGCTTCGGCCCAGACCTGGCCGCTGGCCAGG‑CTGGCAACcatcatcat                                                                                                                              <  1:1712336/150‑1 (MQ=255)

                           aCCAGTTGATCGCTTCGGCGGGTATGTTGCTGTAGCTGTAACAGGTGTGCCGCTCCACCGGCGTCACGGCGTCGCTGGAGGAGCGAGTCAGCACATTGCAAGCTTCGGCCCAGACCTGGCCGCTGGCCAGG‑CTGGCAACCAtcatcatca                                                                                                                            >  2:1010787/1‑150 (MQ=255)

                            ccAGTTGATCGCTTCGGCGGGTATGTTGCTGTAGCTGTAACAGGTGTGCCGCTCCACCGGCGTCACGGCGTCGCTGGAGGAGCGAGTCAGCACATTGCAAGCTTCGGCCCAGACCTGGCCGCTGGCCAGG‑CTGGCAACCATCATCATCaa                                                                                                                           <  2:823480/150‑1 (MQ=255)

                             cAGTTGATCGCTTCGGCGGGTATGTTGCTGTAGCTGTAACAGGTGTGCCGCTCCACCGGCGTCACGGCGTCGCTGGAGGAGCGAGTCAGCACATTGCAAGCTTCGGCCCAGACCTGGCCGCTGGCCAGG‑CTGGCAACCATCATCATCAAg                                                                                                                          >  1:62912/1‑150 (MQ=255)

                             cAGTTGATCGCTTCGGCGGGTATGTTGCTGTAGCTGTAACAGGTGTGCCGCTCCACCGGCGTCACGGCGTCGCTGGAGGAGCGAGTCAGCACATTGCAAGCTTCGGCCCAGACCTGGCCGCTGGCCAGG‑CTGGCAACCATCATCATCAAg                                                                                                                          <  1:3107612/150‑1 (MQ=255)

                               gTTGATCGCTTCGGCGGGTATGTTGCTGTAGCTGTAACAGGTGTGCCGCTCCACCGGCGTCACGGCGTCGCTGGAGGAGCGAGTCAGCACATTGCAAGCTTCGGCCCAGACCTGGCCGCTGGCCAGG‑CTGGCAACCATCATCATCAAGGc                                                                                                                        >  2:3483858/1‑150 (MQ=255)

                                  gATCGCTTCGGCGGGTATGTTGCTGTAGCTGTAACAGGTGTGCCGCTCCACCGGCGTCACGGCGTCGCTGGAGGAGCGAGTCAGCACATTGCAAGCTTCGGCCCAGACCTGGCCGCTGGCCAGG‑CTGGCAACCATCATCATCAAGGCAgg                                                                                                                     <  1:2809033/150‑1 (MQ=255)

                                    tCGCTTCGGCGGGTATGTTGCTGTAGCTGTAACAGGTGTGCCGCTCCACCGGCGTCACGGCGTCGCTGGAGGAGCGAGTCAGCACATTGCAAGCTTCGGCCCAGACCTGGCCGCTGGCCAGG‑CTGGCAACCATCATCATCAAGGCAGGaa                                                                                                                   <  2:4004451/150‑1 (MQ=255)

                                    tCGCTTCGGCGGGTATGTTGCTGTAGCTGTAACAGGTGTGCCGCTCCACCGGCGTCACGGCGTCGCTGGAGGAGCGAGTCAGCACATTGCAAGCTTCGACCCAGACCTGGCCGCTGGCCAGG‑CTGGCAACCATCATCATCAAGGCAGGaa                                                                                                                   >  1:2980902/1‑150 (MQ=255)

                                    tCGCTTCGGCGGGTATGTTGCTGTAGCTGTAACAGGTGTGCCGCTCCACCGGCGTCACGGCGTCGCTGGAGGAGCGAGTCAGCACATTGCAAGCTTCGACCCAGACCTGGCCGCTGGCCAGG‑CTGGCAACCATCATCATCAAGGCAGGaa                                                                                                                   >  1:1310213/1‑150 (MQ=255)

                                           ggcggGTATGTTGCTGTAGCTGTAACAGGTGTGCCGCTCCACCGGCGTCACGGCGTCGCTGGAGGAGCGAGTCAGCACATTGCAAGCTTCGGCCCAGACCTGGCCGCTGGCCAGG‑CTGGCAACCATCATCATCAAGGCAGGAACACGCAt                                                                                                            >  1:4169978/1‑150 (MQ=255)

                                           ggcggGTATGTTGCTGTAGCTGTAACAGGTGTGCCGCTCCACCGGCGTCACGGCGTCGCTGGAGGAGCGAGTCAGCACATTGCAAGCTTCGGCCCAGACCTGGCCGCTGGCCAGG‑CTGGCAACCATCATCATCAAGGCAGGAACACGCAt                                                                                                            >  1:4170017/1‑150 (MQ=255)

                                              gggTATGTTGCTGTAGCTGTAACAGGTGTGCCGCTCCACCGGCGTCACGGCGTCGCTGGAGGAGCGAGTCAGCACATTGCAAGCTTCGGCCCAGACCTGGCCGCTGGCCAGG‑CTGGCAACCATCATCATCAAGGCAGGAACACGCAtttt                                                                                                         >  2:1665351/1‑150 (MQ=255)

                                                gTATGTTGCTGTAGCTGTAACAGGTGTGCCGCTCCACCGGCGTCACGGCGTCGCTGGAGGAGCGAGTCAGCACATTGCAAGCTTCGGCCCAGACCTGGCCGCTGGCCAGG‑CTGGCAACCATCATCATCAAGGCAGGAACACGCATTTTcc                                                                                                       >  1:4378975/1‑150 (MQ=255)

                                                 tATGTTGCTGTAGCTGTAACAGGTGTGCCGCTCCACCGGCGTCACGGCGTCGCTGGAGGAGCGAGTCAGCACATTGCAAGCTTCGGCCCAGACCTGGCCGCTGGCCAGG‑CTGGCAACCATCATCATCAAGGCAGGAACACGCATTTTCCa                                                                                                      <  1:1218949/150‑1 (MQ=255)

                                                  aTGTTGCTGTAGCTGTAACAGGTGTGCCGCTCCACCGGCGTCACGGCGTCGCTGGAGGAGCGAGTCAGCACATTGCAAGCTTCGGCCCAGACCTGGCCGCTGGCCAGG‑CTGGCAACCATCATCATCAAGGCAGGAACACGCATTTTCCAc                                                                                                     <  2:4307306/150‑1 (MQ=255)

                                                   tGTTGCTGTAGCTGTAACAGGTGTGCCGCTCCACCGGCGTCACGGCGTCGCTGGAGGAGCGAGTCAGCACATTGCAAGCTTCGGCCCAGACCTGGCCGCTGGCCAGG‑CTGGCAACCATCATCATCAAGGCAGGAACACGCATTTTCCAcc                                                                                                    >  1:3957649/1‑150 (MQ=255)

                                                       gctgtagctgtaACAGGTGTGCCGCTCCACCGGCGTCACGGCGTCGCTGGAGGAGCGAGTCAGCACATTGCAAGCTTCGGCCCAGACCTGGCCGCTGGCCAGG‑CTGGCAACCATCATCATCAAGGCAGGAACACGCATTTTCCACCTCCa                                                                                                >  2:3218640/1‑150 (MQ=255)

                                                       gctgtagctgtaACAGGTGTGCCGCTCCACCGGCGTCACGGCGTCGCTGGAGGAGCGAGTCAGCACATTGCAAGCTTCGGCCCAGACCTGGCCGCTGGCCAGG‑CTGGCAACCATCATCATCAAGGCAGGAACACGCATTTTCCACCTCCa                                                                                                >  1:1282174/1‑150 (MQ=255)

                                                        ctgtagctgtaACAGGTGTGCCGCTCCACCGGCGTCACGGCGTCGCTGGAGGAGCGAGTCAGCACATTGCAAGCTTCGGCCCAGACCTGGCCGCTGGCCAGG‑CTGGCAACCATCATCATCAAGGCAGGAACACGCATTTTCCACCTCCAg                                                                                               >  2:2828215/1‑150 (MQ=255)

                                                        ctgtagctgtaACAGGTGTGCCGCTCCACCGGCGTCACGGCGTCGCTGGAGGAGCGAGTCAGCACATTGCAAGCTTCGGCCCAGACCTGGCCGCTGGCCAGG‑CTGGCAACCATCATCATCAAGGCAGGAACACGCATTTTCCACCTCCAg                                                                                               <  2:866085/150‑1 (MQ=255)

                                                         tgtagctgtaACAGGTGTGCCGCTCCACCGGCGTCACGGCGTCGCTGGAGGAGCGAGTCAGCACATTGCAAGCTTCGGCCCAGACCTGGCCGCTGGCCAGG‑CTGGCAACCATCATCATCAAGGCAGGAACACGCATTTTCCACCTCCAgg                                                                                              >  2:927788/1‑150 (MQ=255)

                                                          gtagctgtaACAGGTGTGCCGCTCCACCGGCGTCACGGCGTCGCTGGAGGAGCGAGTCAGCACATTGCAAGCTTCGGCCCAGACCTGGCCGCTGGCCAGG‑CTGGCAACCATCATCATCAAGGCAGGAACACGCATTTTCCACCTCCAggg                                                                                             >  2:3593944/1‑150 (MQ=255)

                                                           tagctgtaACAGGTGTGCCGCTCCACCGGCGTCACGGCGTCGCTGGAGGAGCGAGTCAGCACATTGCAAGCTTCGGCCCAGACCTGGCCGCTGGCCAGG‑CTGGCAACCATCATCATCAAGGCAGGAACACGCATTTTCCACCTCCAGGGc                                                                                            >  2:301237/1‑150 (MQ=255)

                                                                gtaACAGGTGTGCCGCTCCACCAGCGTCACGGCGTCGCTGGAGGAGCGAGTCAGCACATTGCAAGCTTCGGCCCAGACCTGGCCGCTGACCAGG‑CTGGCAACCATCATCATCAAGGCAGGAACACGCATTTTCCACCTCCAGGGCACAAg                                                                                       >  2:4179179/1‑150 (MQ=255)

                                                                 taACAGGTGTGCCGCTCCACCGGCGTCACGGCGTCGCTGGAGGAGCGAGTCAGCACATTGCAAGCTTCGGCCCAGACCTGGCCGCTGGCCAGG‑CTGGCAACCATCATCATCAAGGCAGGAACACGCATTTTCCACCTCCAGGGCACAAgg                                                                                      <  1:1169633/150‑1 (MQ=255)

                                                                      ggTGTGCCGCTCCACCGGCGTCACGGCGTCGCTGGAGGAGCGAGTCAGCACATTGCAAGCTTCGGCCCAGACCTGGCCGCTGGCCAGG‑CTGGCAACCATCATCATCAAGGCAGGAACACGCATTTTCCACCTCCAGGGCACAAGGCCCTc                                                                                 <  2:1385852/150‑1 (MQ=255)

                                                                      ggTGTGCCGCTCCACCGGCGTCACGGCGTCGCTGGAGGAGCGAGTCAGCACATTGCAAGCTTCGGCCCAGACCTGGCCGCTGGCCAGG‑CTGGCAACCATCATCATCAAGGCAGGAACACGCATTTTCCACCTCCAGGGCACAAGGCCCTc                                                                                 <  1:4088567/150‑1 (MQ=255)

                                                                          tgCCGCTCCACCGGCGTCACGGCGTCGCTGGAGGAGCGAGTCAGCACATTGCAAGCTTCGGCCCAGACCTGGCCGCTGGCCAGG‑CTGGCAACCATCATCATCAAGGCAGGAACACGCATTTTCCACCTCCAGGGCACAAGGCCCTCGTCa                                                                             >  1:2909829/1‑150 (MQ=255)

                                                                          tgCCGCTCCACCGGCGTCACGGCGTCGCTGGAGGAGCGAGTCAGCACATTGCAAGCTTCGGCCCAGACCTGGCCGCTGGCCAGG‑CTGGCAACCATCATCATCAAGGCAGGAACACGCATTTTCCACCTCCAGGGCACAAGGCCCTCGTCa                                                                             <  2:1156821/150‑1 (MQ=255)

                                                                           gCCGCTCCACCGGCGTCACGGCGTCGCTGGAGGAGCGAGTCAGCACATTGCAAGCTTCGGCCCAGACCTGGCCGCTGGCCAGG‑CTGGCAACCATCATCATCAAGGCAGGAACACGCATTTTCCACCTCCAGGGCACAAGGCCCTCGTCAg                                                                            <  2:3631203/150‑1 (MQ=255)

                                                                            ccGCTCCACCGGCGTCACGGCGTCGCTGGAGGAGCGAGTCAGCACATTGCAAGCTTCGGCCCAGACCTGGCCGCTGGCCAGG‑CTGGCAACCATCATCATCAAGGCAGGAACACGCATTTTCCACCTCCAGGGCACAAGGCCCTCGTCAgg                                                                           >  1:4284299/1‑150 (MQ=255)

                                                                                 ccACCGGCGTCACGGCGTCGCTGGAGGAGCGAGTCAGCACATTGCAAGCTTCGGCCCAGACCTGGCCGCTGGCCAGG‑CTGGCAACCATCATCATCAAGGCAGGAACACGCATTTTCCACCTCCAGGGCACAAGGCCCTCGTCAGGTCTGa                                                                      <  2:2113236/150‑1 (MQ=255)

                                                                                 ccACCGGCGTCACGGCGTCGCTGGAGGAGCGAGTCAGCACATTGCAAGCTTCGGCCCAGACCTGGCCGCTGGCCAGG‑CTGGCAACCATCATCATCAAGGCAGGAACACGCATTTTCCACCTCCAGGGCACAAGGCCCTCGTCAGGTCTGa                                                                      <  2:1409624/150‑1 (MQ=255)

                                                                                 ccACCGGCGTCACGGCGTCGCTGGAGGAGCGAGTCAGCACATTGCAAGCTTCGGCCCAGACCTGGCCGCTGGCCAGG‑CTGGCAACCATCATCATCAAGGCAGGAACACGCATTTTCCACCTCCAGGGCACAAGGCCCTCGTCAGGTCTGa                                                                      <  1:3336622/150‑1 (MQ=255)

                                                                                    ccGGCGTCACGGCGTCGCTGGAGGAGCGAGTCAGCACATTGCAAGCTTCGGCCCAGACCTGGCCGCTGGCCAGG‑CTGGCAACCATCATCATCAAGGCAGGAACACGCATTTTCCACCTCCAGGGCACAAGGCCCTCGTCAGGTCTGAGCa                                                                   <  1:3369702/150‑1 (MQ=255)

                                                                                     cGGCGTCACGGCGTCGCTGGAGGAGCGAGTCAGCACATTGCAAGCTTCGGCCCAGACCTGGCCGCTGGCCAGG‑CTGGCAACCATCATCATCAAGGCAGGAACACGCATTTTCCACCTCCAGGGCACAAGGCCCTCGTCAGGTCTGAGCAg                                                                  <  2:1302648/150‑1 (MQ=255)

                                                                                      ggCGTCACGGCGTCGCTGGAGGAGCGAGTCAGCACATTGCAAGCTTCGGCCCAGACCTGGCCGCTGGCCAGG‑CTGGCAACCATCATCATCAAGGCAGGAACACGCATTTTCCACCTCCAGGGCACAAGGCCCTCGTCAGGTCTGAGCAgg                                                                 <  2:372382/150‑1 (MQ=255)

                                                                                         gTCACGGCGTCGCTGGAGGAGCGAGTCAGCACATTGCAAGCTTCGGCCCAGACCTGGCCGCTGGCCAGG‑CTGGCAACCATCATCATCAAGGCAGGAACACGCATTTTCCACCTCCAGGGCACAAGGCCCTCGTCAGGTCTGAGCAGGCtt                                                              <  2:3594281/150‑1 (MQ=255)

                                                                                         gTCACGGCGTCGCTGGAGGAGCGAGTCAGCACATTGCAAGCTTCGGCCCAGACCTGGCCGCTGGCCAGG‑CTGGCAACCATCATCATCAAGGCAGGAACACGCATTTTCCACCTCCAGGGCACAAGGCCCTCGTCAGGTCTGAGCAGGCtt                                                              <  1:1995406/150‑1 (MQ=255)

                                                                                         gTCACGGCGTCGCTGGAGGAGCGAGTCAGCACATTGCAAGCTTCGGCCCAGACCTGGCCGCTGGCCAGG‑CTGGCAACCATCAGCATCAAGGCAGGAACACGCATTTTCCACCTCCAGGGCACAAGGCCCTCGTCAGGTCTGAGCAGGCtt                                                              >  2:1810219/1‑150 (MQ=255)

                                                                                          tCACGGCGTCGCTGGAGGAGCGAGTCAGCACATTGCAAGCTTCGGCCCAGACCTGGCCGCTGGCCAGG‑CTGGCAACCATCATCATCATGGCAGGAACACGCATTTTCCACCTCCAGGGCACAAGGCCCTCGTCAGGTCTGAGCAGGCTTg                                                             >  2:295551/1‑150 (MQ=255)

                                                                                            aCGGCGTCGCTGGAGGAGCGAGTCAGCACATTGCAAGCTTCGGCCCAGACCTGGCCGCTGGCCAGG‑CTGGCAACCATCATCATCAAGGCAGGAACACGCATTTTCCACCTCCAGGGCACAAGGCCCTCGTCAGGTCTGAGCAGGCTTGTc                                                           <  1:2239564/150‑1 (MQ=255)

                                                                                            aCGGCGTCGCTGGAGGAGCGAGTCAGCACATTGCAAGCTTCGGCCCAGACCTGGCCGCTGGCCAGG‑CTGGCAACCATCATCATCAAGGCAGGAACACGCATTTTCCACCTCCAGGGCACAAGGCCCTCGTCAGGTCTGAGCAGGCTTGTc                                                           <  2:2215762/150‑1 (MQ=255)

                                                                                            aCGGCGTCGCTGGAGGAGCGAGTCAGCACATTGCAAGCTTCGGCCCAGACCTGGCCGCTGGCCAGG‑CTGGCAACCATCATCATCAAGGCAGGAACACGCATTTTCCACCTCCAGGGCACAAGGCCCTCGTCAGGTCTGAGCAGGCTTGTc                                                           >  2:3490640/1‑150 (MQ=255)

                                                                                              ggCGTCGCTGGAGGAGCGAGTCAGCACATTGCAAGCTTCGGCCCAGACCTGGCCGCTGGCCCGG‑CTGGCAACCATCATCATCAAGGCAGGAACACGCATTTTCCACCTCCAGGGCACAAGGCCCTCGTCAGGTCTGAGCAGGCTTGTcgc                                                         >  2:4419302/1‑150 (MQ=255)

                                                                                              ggCGTCGCTGGAGGAGCGAGTCAGCACATTGCAAGCTTCGGCCCAGACCTGGCCGCTGGCCAGG‑CTGGCAACcatcat                                                                                                                                 >  1:4294712/1‑78 (MQ=255)

                                                                                              ggCGTCGCTGGAGGAGCGAGTCAGCACATTGCAAGCTTCGGCCCAGACCTGGCCGCTGGCCAGG‑CTGGCAACcatcat                                                                                                                                 <  2:4294712/78‑1 (MQ=255)

                                                                                                  tCGCTGGAGGAGCGAGTCAGCACATTGCAAGCTTCGGCCCAGACCTGGCCGCTGGCCAGG‑CTGGCAACCATCATCATCAAGGCAGGAACACGCATTTTCCACCTCCAGGGCACAAGGCCCTCGTCAGGTCTGAGCAGGCTTGTCGCGCCg                                                     >  1:1873963/1‑150 (MQ=255)

                                                                                                       ggaggaGCGAGTCAGCACATTGCAAGCTTCGGCCCAGACCTGGCCGCTGGCCAGG‑CTGGCAACCATCATCATCAAGGCAGGAACACGCATTTTCCACCTCCAGGGCACAAGGCCCTCGTCAGGTCTGAGCAGGCTTGTCGCGCCGGCGCa                                                >  1:3317691/1‑150 (MQ=255)

                                                                                                        gaggagCGAGTCAGCACATTGCAAGCTTCGGCCCAGACCTGGCCGCTGGCCAGG‑CTGGCAACCATCATCATCAAGGCAGGAACACGCATTTTCCACCTCCAGGGCACAAGGCCCTCGTCAGGTCTGAGCAGGCTTGTCGCGCCGGCGCAt                                               >  2:1360469/1‑150 (MQ=255)

                                                                                                         aggagCGAGTCAGCACATTGCAAGCTTCGGCCCAGACCTGGCCGCTGGCCAGG‑CTGGCAACCATCATCATCAAGGCAGGAACACGCATTTTCCACCTCCAGGGCACAAGGCCCTCGTCAGGTCTGAGCAGGCTTGTCGCGCCGGCGCATg                                              <  1:1002787/150‑1 (MQ=255)

                                                                                                           gagCGAGTCAGCACATTGCAAGCTTCGGCCCAGACCTGGCCGCTGGCCAGG‑CTGGCAACCATCATCATCAAGGCAGGAACACGCATTTTCCACCTCCAGGGCACAAGGCCCTCGTCAGGTCTGAGCAGGCTTGTCGCGCCGGCGCATGGc                                            >  2:1512975/1‑150 (MQ=255)

                                                                                                              cGAGTCAGCACATTGCAAGCTTCGGCCCAGACCTGGCCGCTGGCCAGG‑CTGGCAACCATCATCATCAAGGCAGGAACACGCATTTTCCACCTCCAGGGCACATGGCCCTCGTCAGGTCTGAGCAGGCTTGTCGCGCCGGCGCATGGCttt                                         <  2:4080750/150‑1 (MQ=255)

                                                                                                              cGAGTCAGCACATTGCAAGCTTCGGCCCAGACCTGGCCGCTGGCCAGG‑CTGGCAACCATCATCATCAAGGCAGGAACACGCATTTTCCACCTCCAGGGCACAAGGCCCTCGTCAGGTCTGAGCAGGCTTGTCGCGCCGGCGCATGGCttt                                         <  2:3796598/150‑1 (MQ=255)

                                                                                                              cGAGTCAGCACATTGCAAGCTTCGGCCCAGACCTGGCCGCTGGCCAGG‑CTGGCAACCATCATCATCAAGGCAGGAACACGCATTTTCCACCTCCAGGGCACAAGGCCCTCGTCAGGTCTGAGCAGGCTTGTCGCGCCGGCGCATGGCttt                                         <  1:317310/150‑1 (MQ=255)

                                                                                                               gAGTCAGCACATTGCAAGCTTCGGCCCAGACCTGGCCGCTGGCCAGG‑CTGGCAACCATCATCATCAAGGCAGGAACACGCATTTTCCACCTCCAGGGCACAAGGCCCTCGTCAGGTCTGAGCAGGCTTGTCGCGCCGGCGCATGGCTTTg                                        <  2:1560800/150‑1 (MQ=255)

                                                                                                                 gTCAGCACATTGCAAGCTTCGGCCCAGACCTGGCCGCTGGCCAGG‑CTGGCAACCATCATCATCACGGCAGGAACACGCATTTTCCACCTCCAGGGCACAAGGCCCTCGTCAGGTCTGAGCAGGCTTGTCGCGCCGGCGCATGGCTTTGgc                                      <  2:2269979/150‑1 (MQ=255)

                                                                                                                   tgtcacaTTGCAAGCTTCGGCCCAGACCTGGCCGCTGGCCAGG‑CTGGCAACCATCATCATCAAGGCAGGAACACGCATTTTCCACCTCCAGGGCACAAGGCCCTCGTCAGGTCTGAGCAGGCTTGTCGCGCCGGCGCATGGCTTTGgcgc                                    <  1:3780491/147‑1 (MQ=255)

                                                                                                                   cAGCACATTGCAAGCTTCGGCCCAGACCTGGCCGCTGGCCAGG‑CTGGCAACCATCATCATCAAGGCAGGAACACGCATTTTCCACCTCCAGGGCACAAGGCCCTCGTCAGGTCTGAGCAGGCTTGTCGCGCCGGCGCATGGCTTTGgcgc                                    >  2:3808431/1‑150 (MQ=255)

                                                                                                                    aGCACATTGCAAGCTTCGGCCCAGACCTGGCCGCTGGCAAGG‑CTGGCAACCATCATCATCAAGGCAGGAACACGCATTTTCCACCTCCAGGGCACAAGGCCCTCGTCAGGTCTGAGCAGGCTTGTCGCGCCGGCGCATGGCTTTGGcgcg                                   >  1:47033/1‑150 (MQ=255)

                                                                                                                     gCACATTGCAAGCTTCGGCCCAGACCTGGCCGCTGGCCAGG‑CTGGCAACCATCATCATCAAGGCAGGAACACGCATTTTCCACCTCCAGGGCACAAGGCCCTCGTCAGGTCTGAGCAGGCTTGTCGCGCCGGCGCATGGCTGTGGCGCGt                                  >  2:2555817/1‑150 (MQ=255)

                                                                                                                          ttGCAAGCTTCGGCCCAGACCTGGCCGCTGGCCAGG‑CTGGCAACCATCATCATCAAGGCAGGAACACGCATTTTCCACCTCCAGGGCACAAGGCCCTCGTCAGGTCTGAGCAGGCTTGTCGCGCCGGCGCATGGCTTTGGCGCGTTTTTc                             >  1:3911185/1‑150 (MQ=255)

                                                                                                                            gCAAGCTTCGGCCCAGACCTGGCCGCTGGCCAGG‑CTGGCAACCATCATCATCAAGGCAGGAACACGCATTTTCCACCTCCAGGGCACAAGGCCCTCGTCAGGTCTGAGCAGGCTTGTCGCGCCGGCGCATGGCTTTGGCGCGTTTTTCCa                           <  1:485095/150‑1 (MQ=255)

                                                                                                                            gCAAGCTTCGGCCCAGACCTGGCCGCTGGCCAGG‑CTGGCAACCATCATCATCAAGGCAGGAACACGCATTTTCCACCTCCAGGGCACAAGGCCCTCGTCAGGTCTGAGCAGGCTTGTCGCGCCGGCGCATGGCTTTGGCGCGTTTTTCCa                           <  2:353862/150‑1 (MQ=255)

                                                                                                                              aaGCTTCGGCCCAGACCTGGCCGCTGGCCAGG‑CTGGCAACCATCATCATCAAGGCAGGAACACGCATTTTCCACCTCCAGGGCACAAGGCCCTCGTCAGGTCTGAGCAGGCTTGTCGCGCCGGCGCATGGCTTTGGCGCGTTTTTCCAgg                         >  1:2632430/1‑150 (MQ=255)

                                                                                                                              aaGCTTCGGCCCAGACCTGGCCGCTGGCCAGG‑CTGGCAACCATCATCATCAAGGCAGGAACACGCATTTTCCACCTCCAGGGCACAAGGCCCTCGTCAGGTCTGAGCAGGCTTGTCGCGCCGGCGCATGGCTTTGGCGCGTTTTTCCAgg                         >  2:2008360/1‑150 (MQ=255)

                                                                                                                              aaGCTTCGGCCCAGACCTGGCCGCTGGCCAGG‑CTGGCAACCATCATCATCAAGGCAGGAACACGCATTTTCCACCTCCAGGGCACAAGGCCCTCGTCAGGTCTGAGCAGGCTTGTCGCGCCGGCGCATGGCTTTGGCGCGTTTTTCCAgg                         >  2:2170948/1‑150 (MQ=255)

                                                                                                                                 cTTCGGCCCAGACCTGGCCGCTGGCCAGG‑CTGGCAACCATCATCATCAAGGCAGGAACACGCATTTTCCACCTCCAGGGCACAAGGCCCTCGTCAGGTCTGAGCAGGCTTGTCGCGCCGGCGCATGGCTTTGGCGCGTTTTTCCAGGATc                      <  2:1279033/150‑1 (MQ=255)

                                                                                                                                 cTTCGGCCCAGACCTGGCCGCTGGCCAGG‑CTGGCAACCATCATCATCAAGGCAGGAACACGCATTTTCCACCTCCAGGGCACAAGGCCCTCGTCAGGTCTGAGCAGGCTTGTCGCGCCGGCGCATGGCTTTGGCGCGTTTTTCCAGGATc                      <  2:2360549/150‑1 (MQ=255)

                                                                                                                                       cccAGACCTGGCCGCTGGCCAGG‑CTGGCAACCATCATCATCAAGGCAGGAACACGCATTTTCCACCTCCAGGGCACAAGGCCCTCGTCAGGTCTGAGCAGGCTTGTCGCGCCGGCGCATGGCTTTGGCGCGTTTTTCCAGGATCaggtag                <  2:1844915/150‑1 (MQ=255)

                                                                                                                                       cccAGACCTGGCCGCTGGCCAGG‑CTGGCAACCATCATCATCAAGGCAGGAACACGCATTTTCCACCTCCAGGGCACAAGGCCCTCGTCAGGTCTGAGCAGGCTTGTCGCGCCGGCGCATGGCTTTGGCGCGTTTTTCCAGGATCaggtag                >  2:2178577/1‑150 (MQ=255)

                                                                                                                                       cccAGACCTGGCCGCTGGCCAGG‑CGGGCAACCATCATCATCAAGGCAGGAACACGCATTTTCCACCTCCCGGGCACAAGGCCCTCGTCAGGTCTGAGCAGGCTTGTCGCGCCGGCGCATGGCTTTGGCGCGTTTTTCCAGGATCaggtag                <  2:4117154/150‑1 (MQ=255)

                                                                                                                                         ccagccTGGCCAGCGGCCAGG‑CTGGCAACCATCATCATCAAGGCAGGAACACGCATTTTCCACCTCCAGGGCACAAGGCCCTCGTCAGGTCTGAGCAGGCTTGTCGCGCCGGCGCATGGCTTTGGCGCGTTTTTCCAGGATCaggtaggt              >  1:1199129/5‑150 (MQ=255)

                                                                                                                                          cagccTGGCCAGCGGCCAGG‑CTGGCACCCATCATCATCAAGGCAGGAACACGCATTTTCCACCTCCAGGGCACAAGGCCCTCGTCAGGTCTGAGCAGGCTTGTCGCGCCGGCGCATGGCTTTGGCGCGTTTTTCCAGGATCAGGTAGGTc             >  2:107419/4‑150 (MQ=255)

                                                                                                                                          cagccTGGCCAGCGGCCAGG‑CTGGCAACCATCATCATCAAGGCAGGAACACGCATTTTCCACCTCCAGGGCACAAGGCCCTCGTCAGGTCTGAGCAGGCTTGTCGCGCCGGCGCATGGCTTTGGCGCGTTTTTCCAGGATCAGGTAGGTc             >  1:3648898/4‑150 (MQ=255)

                                                                                                                                          cagccTGGCCAGCGGCCAGG‑CTGGCAACCATCATCATCAAGGCAGGAACACGCATTTTCCACCTCCAGGGCACAAGGCCCTCGTCAGGTCTGAGCAGGCTTGTCGCGCCGGCGCATGGCTTTGGCGCGTTTTTCCAGGATCAGGTAGGTc             >  1:1569178/4‑150 (MQ=255)

                                                                                                                                          cagccTGGCCAGCGGCCAGG‑CTGGCAACCATCATCATCAAGGCAGGAACACGCATTTTCCACCTCCAGGGCACAAGGCCCTCGTCAGGTCTGAGCAGGCTTGTCGCGCCGGCGCATGGCTTTGGCGCGTTTTTCCAGGATCAGGTAGGTc             >  1:1371552/4‑150 (MQ=255)

                                                                                                                                           agccTGGCCAGCGGCCAGGTCTGGCAACCATCATCATCAAGGCAGGAACACGCATTTTCCACCTCCAGGGCACAAGGCCCTCGTCAGGTCTGAGCAGGCTTGTCGCGCCGGCGCATGGCTTTGGCGCGTTTTTCCAGGATCAGGTAGGTc             >  2:3922065/3‑150 (MQ=255)

                                                                                                                                              cTGGCCGCTGGCCAGG‑CTGGCAACCATCATCATCAAGGCAGGAACACGCATTTTCCACCTCCAGGGCACAAGGCCCTCGTCAGGTCTGAGCAGGCTTGTCGCGCCGGCGCATGGCTTTGGCGCGTTTTTCCAGGATCAGGTAGGTcacca         >  2:3972713/1‑150 (MQ=255)

                                                                                                                                               tGGCCGCTGGCCAGG‑CTGGCAACCATCATCATCAAGGCAGGAACACGCATTTTCCACCTCCAGGGCACAAGGCCCTCGTCAGGTCTGAGCAGGCTTGTCGCGCCGGCGCATGGCTTTGGCGCGTTTTTCCAGGATCAGGTAGGTcaccac        >  2:3927860/1‑150 (MQ=255)

                                                                                                                                               tGGCCGCTGGCCAGG‑CTGGCAACCATCATCATCAAGGCAGGAACACGCATTTTCCACCTCCAGGGCACAAGGCCCTCGTCAGGTCTGAGCAGGCTTGTCGCGCCGGCGCATGGCTTTGGCGCGTTTTTCCAGGATCAGGTAGGTcaccac        >  2:647678/1‑150 (MQ=255)

                                                                                                                                                  ccGCTGGCCAGG‑CTGGCAACCATCATCATCAAGGCAGGAACACGCATTTTCCACCTCCAGGGCACAAGGCCCTCGTCAGGTCTGAGCAGGCTTGTCGCGCCGGCGCATGGCTTTGGCGCGTTTTTCCAGGATCAGGTAGGTCACCACTGc     <  1:2323368/150‑1 (MQ=255)

                                                                                                                                                   cGCTGGCCAGG‑CTGGCAACCATCATCATCAAGGCAGGAACACGCATTTTCCACCTCCAGGGCACAAGGCCCTCGTCAGGTCTGAGCAGGCTTGTCGCGCCGGCGCATGGCTTTGGCGCGTTTTTCCAGGATCAGGTAGGTCACCACTGcc    >  2:3679282/1‑150 (MQ=255)

                                                                                                                                                     cTGGCCAGG‑CTGGCAACCATCATCATCAAGGCAGGAACACGCATTTTCCACCTCCAGGGCACAAGGCCCTCGTCAGGTCTGAGCAGGCTTGTCGCGCCGGCGCATGGCTTTGGCGCGTTTTTCCAGGATCAGGTAGGTCACCACTGCCaa  <  2:2705971/150‑1 (MQ=255)

GCATGTCCTTGCTTTCGTTGCTGCATGACCAGTTGATCGCTTCGGCGGGTATGTTGCTGTAGCTGTAACAGGTGTGCCGCTCCACCGGCGTCACGGCGTCGCTGGAGGAGCGAGTCAGCACATTGCAAGCTTCGGCCCAGACCTGGCCGCTGGCCAGG‑CTGGCAACCATCATCATCAAGGCAGGAACACGCATTTTCCACCTCCAGGGCACAAGGCCCTCGTCAGGTCTGAGCAGGCTTGTCGCGCCGGCGCATGGCTTTGGCGCGTTTTTCCAGGATCAGGTAGGTCACCACTGCCAA  >  NC_002947/3699261‑3699559

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`