| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,865,805 | C→T | 6.0% | P921L (CCA→CTA) ‡ | PP_3413 → | two‑component system sensor histidine kinase/response regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,865,805 | 0 | C | T | 6.0% | 691.4 / 22.2 | 216 | P921L (CCA→CTA) ‡ | PP_3413 | two‑component system sensor histidine kinase/response regulator |
| Reads supporting (aligned to +/- strand): ref base C (84/119); new base T (9/4); total (93/123) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.97e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.42e-01 | |||||||||||
Only 100 of 226 total aligned reads displayed.
GTGACACTGGCGGAGAATGGCGAGATCGCCCTTGCACGCTGGCAGGAAGCGCGCTTCGACCTGGTGATCACCGATTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGCAGCCTGGAGGGCGAGCGCGGCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGCCGATTGGTCTGCGCACGCTCAAGACCCACCTGCCCCAGGTGCGCCCTCAGCAG > NC_002947/3865657‑3865950 | gtgACACTGGCGGAGAATGGCGAGATCGCCCTTGCACGCTGGCAGGAAGCGCGCTTCGACCTGGTGATCACCGATTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGCAGCCTGGAGGGCGAGCGCGGCCTGCca < 2:4152108/150‑1 (MQ=255) gACACTGGCGGAGAATGGCGAGATCGCCCTTGCACGCTGGCAGGAAGCGCGCTTCGACCTGGTGATCACCGATTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGCAGCCTGGAGGGCGAGCGCGGCCTGCcagc > 1:3003548/1‑150 (MQ=255) acacTGGCGGAGAATGGCGAGATCGCCCTTGCACGCTGGCAGGAAGCGCGCTTCGACCTGGTGATCACCGATTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGCAGCCTGGAGGGCGAGCGCGGCCTGCcagca > 2:195033/1‑150 (MQ=255) acacTGGCGGAGAATGGCGAGATCGCCCTTGCACGCTGGCAGGAAGCGCGCTTCGACCTGGTGATCACCGATTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGCAGCCTGGAGGGCGAGCGCGGCCTGCcagca > 2:194965/1‑150 (MQ=255) acacTGGCGGAGAATGGCGAGATCGCCCTTGCACGCTGGCAGGAAGCGCGCTTCGACCTGGTGATCACCGATTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGCAGCCTGGAGGGCGAGCGCGGCCTGCcagca < 2:809446/150‑1 (MQ=255) cTGGCGGAGAATGGCGAGATCGCCCTTGCACGCTGGCAGGAAGCGCGCTTCGACCTGGTGATCACCGATTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGCAGCCTGGAGGGCGAGCGCGGCCTGCCAGCAGGc < 1:3852209/150‑1 (MQ=255) tGGCGGAGAATGGCGAGATCGCCCTTGCACGCTGGCAGGAAGCGCGCTTCGACCTGGTGATCACCGATTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGCAGCCTGGAGGGCGAGCGCGGCCTGCCAGCAGGcc > 1:3792384/1‑150 (MQ=255) ggAGAATGGCGAGATCGCCCTTGCACGCTGGCAGGAAGCGCGCTTCGACCTGGTGATCACCGATTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGCAGCCTGGAGGGCGAGCGCGGCCTGCCAGCAGGCCGTAt > 2:3749865/1‑150 (MQ=255) gagaATGGCGAGATCGCCCTTGCACGCTGGCAGGAAGCGCGCTTCGACCTGGTGATCACCGATTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGCAGCCTGGAGGGCGAGCGCGGCCTGCCAGCAGGCCGTAtt > 2:3990495/1‑150 (MQ=255) ggCGAGATCGCCCTTTCACGCTGGCAGGAAGCGCGCTTCGACCTGGTGATCACCGATTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGCAGCCTGGAGGGCGAGCGCGGCCTGCCAGCAGGCCGTATTCTTGGc < 2:639791/150‑1 (MQ=255) ggCGAGATCGCCCTTGCACGCTGGCAGGAAGCGCGCTTCGACCTGGTGATCACCGATTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGCAGCCTGGAGGGCGAGCGCGGCCTGCCAGCAGGCCGTATTCTTGGc < 2:4499992/150‑1 (MQ=255) ggCGAGATCGCCCTTGCACGCTGGCAGGAAGCGCGCTTCGACCTGGTGATCACCGATTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGCAGCCTGGAGGGCGAGCGCGGCCTGCCAGCAGGCCGTATTCTTGGc < 1:1753943/150‑1 (MQ=255) ggCGAGATCGCCCTTGCACGCTGGCAGGAAGCGCGCTTCGACCTGGTGATCACCGATTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGCAGCCTGGAGGGCGAGCGCGGCCTGCCAGCAGGCCGTATTCTTGGc < 1:4170950/150‑1 (MQ=255) ggCGAGATCGCCCTTGCACGCTGGCAGGAAGCGCGCTTCGACCTGGTGATCACCGATTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGCAGCCTGGAGGGCGAGCGCGGCCTGCCAGCAGGCCGTATTCTTGGc < 1:53344/150‑1 (MQ=255) ggCGAGATCGCCCTTGCACGCTGGCAGGAAGCGCGCTTCGACCTGGTGATCACCGATTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGCAGCCTGGAGGGCGAGCGCGGCCTGCCAGCAGGCCGTATTCTTGGc < 2:273226/150‑1 (MQ=255) ggCGAGATCGCCCTTGCACGCTGGCAGGAAGCGCGCTTCGACCTGGTGATCACCGATTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGCAGCCTGGAGGGCGAGCGCGGCCTGCCAGCAGGCCGTATTCTTGGc < 2:2418837/150‑1 (MQ=255) cGCCCTTGCACGCTGGCAGGAAGCGCGCTTCGACCTGGTGATCACCGATTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGCAGCCTGGAGGGCGAGCGCGGCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGc < 2:911313/150‑1 (MQ=255) cccTTGCACGCTGGCAGGAAGCGCGCTTCGACCTGGTGATCACCGATTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGCAGCCTGGAGGGCGAGCGCGGCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCa > 1:1414548/1‑150 (MQ=255) ccTTGCACGCTGGCAGGAAGCGCGCTTCGACCTGGTGATCACCGATTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGCAGCCTGGAGGGCGAGCGCGGCCTGCCAGCAGGCCGTATTCTAGGCGTGACCGCCaa > 1:3494918/1‑150 (MQ=255) cTTGCACGCTGGCAGGAAGCGCGCTTCGACCTGGTGATCACCGATTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGCAGCCTGGAGGGCGAGCGCGGCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAAt < 1:1991861/150‑1 (MQ=255) ttGCACGCTGGCAGGAAGCGCGCTTCGACCTGGTGATCACCGATTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGCAGCCTGGAGGGCGAGCGCGGCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATg > 2:2159598/1‑150 (MQ=255) ttGCACGCTGGCAGGAAGCGCGCTTCGACCTGGTGATCACCGATTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGCAGCCTGGAGGGCGAGCGCGGCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATg > 1:1389363/1‑150 (MQ=255) gCACGCTGGCAGGAAGCGCGCTTCGACCTGGTGATCACCGATTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCAGTCGCAGCCTGGAGGGCGAGCGCGGCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGcc > 2:3620968/1‑150 (MQ=255) gCTGGCAGGAAGCGCGCTTCGACCTGGTGATCACCGATTACAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGCAGCCTGGAGGGCGAGCGCGGCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAgg > 1:711560/1‑150 (MQ=255) gCAGGAAGCGCGCTTCGACCTGGTGATCACCGATTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGCAGCCTGGAGGGCGAGCGCGGCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCga > 2:1518048/1‑150 (MQ=255) cAGGAAGCGCGCTTCGACCTGGTGATCACCGATTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGCAGCCTGGAGGGCGAGCGCGGCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCgag < 2:387198/150‑1 (MQ=255) aGGAAGCGCGCTTCGACCTGGTGATCACCGATTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGCAGCCTGGAGGGCGAGCGCGGCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCgagg > 2:3616076/1‑150 (MQ=255) aGGAAGCGCGCTTCGACCTGGTGATCACCGATTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGCAGCCTGGAGGGCGAGCGCGGCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCgagg > 2:4118556/1‑150 (MQ=255) aGGAAGCGCGCTTCGACCTGGTGATCACCGATTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGCAGCCTGGAGGGCGAGCGCGGCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCgagg > 2:1111570/1‑150 (MQ=255) aGGAAGCGCGCTTCGACCTGGTGATCACCGATTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGCAGCCTGGAGGGCGAGCGCGGCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCgagg > 1:3410346/1‑150 (MQ=255) gAAGCGCGCTTCGACCTGGTGATCACCGATTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGCAGCCTGGAGGGCGAGCGCGGCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCgaggag < 2:2111477/150‑1 (MQ=255) gAAGCGCGCTTCGACCTGGTGATCACCGATTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGCAGCCTGGAGGGCGAGCGCGGCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCgaggag < 2:3298758/150‑1 (MQ=255) aaGCGCGCTTCGACCTGGTGATCACCGATTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGCAGCCTGGAGGGCGAGCGCGGCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGc < 2:735192/150‑1 (MQ=255) aaGCGCGCTTCGACCTGGTGATCACCGATTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGCAGCCTGGAGGGCGAGCGCGGCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGc < 1:315092/150‑1 (MQ=255) aaGCGCGCTTCGACCTGGTGATCACCGAGTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGCAGCCTGGAGGGCGAGCGCGGCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGc < 2:2990796/150‑1 (MQ=255) cgcgcTTCGACCTGGTGATCACCGATTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGCAGCCTGGAGGGCGAGCGCGGCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTa > 2:2836865/1‑150 (MQ=255) gcgcTTCGACCTGGTGATCACCGATTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGCAGCCTGGAGGGCGAGCGCGGCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTAc > 2:581115/1‑150 (MQ=255) ttCGACCTGGTGATCACCGATTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGCAGCCTGGAGGGCGAGCGCGGCCTGCCAGCAGGCTGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGc > 2:1985831/1‑150 (MQ=255) ttCGACCTGGTGATCACCGATTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGCAGCCTGGAGGGCGAGCGCGGCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGc < 1:644465/150‑1 (MQ=255) cGACCTGGTGATCACCGATTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGCAGCCTGGAGGGCGAGCGCGGCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTg < 1:27468/150‑1 (MQ=255) cGACCTGGTGATCACCGATTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGCAGCCTGGAGGGCGAGCGCGGCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTg < 1:2808261/150‑1 (MQ=255) gACCTGGTGATCACCGATTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGCAGCCTGGAGGGCGAGCGCGGCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGc < 1:3135482/150‑1 (MQ=255) aCCTGGTGATCACCGATTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGCAGCCTGGAGGGCGAGCGCGGCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGccc < 1:2295105/126‑1 (MQ=255) ccTGGTGATCACCGATTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGCAGCCTGGAGGGCGAGCGCGGCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCt < 1:2127694/150‑1 (MQ=255) ggTGATCACCGATTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGCAGCCTGGAGGGCGAGCGCGGCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGc < 2:3393962/150‑1 (MQ=255) aCCGATTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGCAGCCTGGAGGGCGAGCGCGGCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGc > 1:3629866/1‑150 (MQ=255) aCCGATTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGCAGCCTGGAGGGCGAGCGCGGCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGc > 1:4520414/1‑150 (MQ=255) aCCGATTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGCAGCCTGGAGGGCGAGCGCGGCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGc > 1:1583362/1‑150 (MQ=255) aCCGATTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGCAGCCTGGAGGGCGAGCGCGGCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGc > 1:961016/1‑150 (MQ=255) ccGATTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGCAGCCTGGAGGGCGAGCGCGGCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGACAGCGGCa > 2:100886/1‑150 (MQ=255) ttGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGCAGCCTGGAGGGCGAGCGCGGCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGa > 1:4134930/1‑150 (MQ=255) tGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGCAGCCTGGAGGGCGAGCGCGGCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGAc < 1:2514879/150‑1 (MQ=255) cagcaTGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGCAGCCTGGAGGGCGAGCGCGGCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGa > 2:1167947/1‑150 (MQ=255) aTGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGCAGCCTGGAGGGCGAGCGCGGCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGcc > 1:2632134/1‑108 (MQ=255) aTGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGCAGCCTGGAGGGCGAGCGCGGCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGcc < 2:2632134/108‑1 (MQ=255) gCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGCAGCCTGGAGGGCGAGCGCGGCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCt < 1:3575005/150‑1 (MQ=255) gCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGCAGCCTGGAGGGCGAGCGCGGCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCt < 2:3255232/150‑1 (MQ=255) gCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGCAGCCTGGAGGGCGAGCGCGGCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCt < 1:4012239/150‑1 (MQ=255) gCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGCAGCCTGGAGGGCGAGCGCGGCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCt < 1:1960349/150‑1 (MQ=255) tCATGGACGGGCATGAACTCACCCGGCGCATTCGCAGCCTGGAGGGCGAGCGCGGCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCa < 2:1367514/150‑1 (MQ=255) cATGGACGGGCATGAACTCACCCGGCGCATTCGCAGCCTGGAGGGCGAGCGCGGCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCaa < 2:614625/150‑1 (MQ=255) cATGGACGGGCATGAACTCACCCGGCGCATTCGCAGCCTGGAGGGCGAGCGCGGCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCaa < 2:409728/150‑1 (MQ=255) aTGGACGGGCATGAACTCACCCGGCGCATTCGCAGCCTGGAGGGCGAGCGCGGCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAg < 1:3174007/150‑1 (MQ=255) tGGACGGGCATGAACTCACCCGGCGCATTCGCAGCCTGGAGGGCGAGCGCGGCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGc > 1:1643177/1‑150 (MQ=255) tGGACGGGCATGAACTCACCCGGCGCATTCGCAGCCTGGAGGGCGAGCGCGGCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGc < 2:1597991/150‑1 (MQ=255) tGGACGGGCATGAACTCACCCGGCGCATTCGCAGCCTGGAGGGCGAGCGCGGCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGc < 2:1717330/150‑1 (MQ=255) ggACGGGCATGAACTCACCCGGCGCATTCGCAGCCTGGAGGGCGAGCGCGGCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGcc > 2:212171/1‑150 (MQ=255) ggACGGGCATGAACTCACCCGGCGCATTCGCAGCCTGGAGGGCGAGCGCGGCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGcc > 2:2278857/1‑150 (MQ=255) cGGGCATGAACTCACCCGGCGCATTCGCAGCCTGGAGGGCGAGCGCGGCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGCCGAt < 1:3927366/150‑1 (MQ=255) cATGAACTCACCCGGCGCATTCGCAGCCTGGAGGGCGAGCGCGGCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGCCGATTGGt < 2:3782947/150‑1 (MQ=255) aTGAACTCACCCGGCGCATTCGCAGCCTGGAGGGCGAGCGCGGCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGCCGATTGGTc > 1:3652623/1‑150 (MQ=255) gAACTCACCCGGCGCATTCGCAGCCTGGAGGGCGAGCGCGGCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGCCGATTGGTCTg < 2:1792242/150‑1 (MQ=255) tCACCCGGCGCATTCGCAGCCTGGAGGGCGAGCGCGGCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGCCGATTGGTCTGCGCa > 1:3058389/1‑150 (MQ=255) tCACCCGGCGCATTCGCAGCCTGGAGGGCGAGCGCGGCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGCCGATTGGTCTGCGCa > 2:3383492/1‑150 (MQ=255) tCACCCGGCGCATTCGCAGCCTGGAGGGCGAGCGCGGCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGCCGATTGGTCTGCGCa > 1:115381/1‑150 (MQ=255) tCACCCGGCGCATTCGCAGCCTGGAGGGCGAGCGCGGCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGCCGATTGGTCTGCGCa > 1:565129/1‑150 (MQ=255) cACCCGGCGCATTCGCAGCCTGGAGGGCGAGCGCGGCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGCCGATTGGTCTGCGCAc < 2:4356948/150‑1 (MQ=255) aCCCGGCGCATTCGCAGCCTGGAGGGCGAGCGCGGCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGCCGATTGGTCTGCGCACg > 2:3229266/1‑150 (MQ=255) aCCCGGCGCATTCGCAGCCTGGAGGGCGAGCGCGGCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGCCGATTGGTCTGCGCACg > 1:4481545/1‑150 (MQ=255) ccGGCGCATTCGCAGCCTGGAGGGCGAGCGCGGCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGCCGATTGGTCTGCGCACGCt > 1:4296898/1‑150 (MQ=255) ggCGCATTCGCAGCCTGGAGGGCGAGCGCGGCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGCCGATTGGTCTGCGCACGCTCa < 1:1243152/150‑1 (MQ=255) gcgcATTCGCAGCCTGGAGGGCGAGCGCGGCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGCCGATTGGTCTGCGCACGCTCaa < 2:1258249/150‑1 (MQ=255) cgcAGTCGCAGCCTGGAGGGCGAGCGCGGCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGCCGATTGGTCTGCGCACGCTCAAg < 1:1880002/150‑1 (MQ=255) gcATTCGCAGCCTGGAGGGCGAGCGCGGCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGCCGATTGGTCTGCGCACGCTCAAGa < 2:4414647/150‑1 (MQ=255) gcATTCGCAGCCTGGAGGGCGAGCGCGGCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGCCGATTGGTCTGCGCACGCTCAAGa < 1:2898539/150‑1 (MQ=255) aTTCGCAGCCTGGAGGGCGAGCGCGGCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGCCGATTGGTCTGCGCACGCTCAAGAcc > 1:2274247/1‑150 (MQ=255) aTTCGCAGCCTGGAGGGCGAGCGCGGCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGCCGATTGGTCTGCGCACGCTCAAGAcc > 1:2646512/1‑150 (MQ=255) cGCAGCCTGGAGGGCGAGCGCGGCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGCCGATTGGTCTGCGCACGCTCAAGACCCAc < 2:429370/150‑1 (MQ=255) gggCGAGCGCGGCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGCCGATTGGTCTGCGCACGCTCAAGACCCACCTGCCCCAGGt < 1:4393848/150‑1 (MQ=255) aagaatacgGCCTGCTGGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGCCGATTGGTCTGCGCACGCTCAAGACCCACCTGCCCCAGGTgc > 1:1407964/8‑150 (MQ=255) gAGCGCGGCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGCCGATTGGTCTGCGCACGCTCAAGACCCACCTGCCCCAGGTgcgc < 1:2686068/150‑1 (MQ=255) atacgGCCTGCTGGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGCCGATTGGTCTGCGCGCGCTCAAGACCCACCTGCCCCAGGTGCGccc > 2:3090877/4‑150 (MQ=255) tacgGCCTGCTGGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGCCGATTGGTCTgc > 2:824922/3‑115 (MQ=255) tacgGCCTGCTGGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGCCGATTGGTCTgc < 1:824968/113‑1 (MQ=255) cgcgGCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGCCGATTGGTCTGCGCACGCTCAAGACCCACCTGCCCCAGGTGCGCCCt < 1:2544686/150‑1 (MQ=255) gcgGCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGCCGATTGGTCTGCGCACGCTCAAGACCCACCTGCCCCAGGTGCGCCCTc > 2:3653133/1‑150 (MQ=255) cgGCCTGCTGGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGCCGATTGGTCTGCGCACGCTCAAGACCCACCTGCCCCAGGTGCGCCCTca > 2:192689/1‑150 (MQ=255) cgGCCTGCTGGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGCCGATTGGTCTGCGCACGCTCAAGACCCACCTGCCCCAGGTGCGCCCTca > 2:2924086/1‑150 (MQ=255) cgGCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGCCGATTGGTCTGCGCACGCTCAAGACCCACCTGCCCCAGGTGCGCCCTca > 1:3878389/1‑150 (MQ=255) ggCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGCCGATTGGTCTGCGCACGCTCAAGACCCACCTGCCCCAGGTGCGCCCTcag > 2:2335711/1‑150 (MQ=255) | GTGACACTGGCGGAGAATGGCGAGATCGCCCTTGCACGCTGGCAGGAAGCGCGCTTCGACCTGGTGATCACCGATTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGCAGCCTGGAGGGCGAGCGCGGCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGCCGATTGGTCTGCGCACGCTCAAGACCCACCTGCCCCAGGTGCGCCCTCAGCAG > NC_002947/3865657‑3865950 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |