| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,976,356 | T→C | 5.1% | N28S (AAC→AGC) ‡ | PP_3503 ← | sigma‑54 dependent transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,976,356 | 0 | T | C | 5.1% | 642.8 / 14.4 | 195 | N28S (AAC→AGC) ‡ | PP_3503 | sigma‑54 dependent transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base T (84/100); new base C (3/7); total (88/107) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.16e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.99e-01 | |||||||||||
Only 100 of 199 total aligned reads displayed.
GGCAATCCATTCGGTGTTGCTGCGCTTGATCATGTCCTTGACCGCGTCCGGGTGCCTCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCATGACCGATCCTTGGCGCCAGTTTTTGGTTTTTTGAAGTAAAACAGCAAGTTGTGGCGCCCGTTTAA > NC_002947/3976208‑3976503 | ggCAATCCATTCGGTGTTGCTGCGCTTGATCATGTCCTTGACCGCGTCCGGGTGCCTCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGtt > 2:82356/1‑150 (MQ=255)ggCAATCCATTCGGTGTTGCTGCGCTTGATCATGTCCTTGACCGCGTCCGGGTGCCTCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCAGCGtt < 1:1077029/150‑1 (MQ=255) gCAATCCATTCGGTGTTGCTGCGCTTGATCATGTCCTTGACCGCGTCCGGGTGCCTCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTg < 2:2917943/150‑1 (MQ=255) aaTCCATTCGGTGTTGCTGCGCTTGATCATGTCCTTGACCGCGTCCGGGTGCCTCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTgcg < 2:763242/150‑1 (MQ=255) aTCCATTCGGTGTTGCTGCGCTTGATCATGTCCTTGACCGCGTCCGGGTGCCTCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTgcgc < 1:4467817/150‑1 (MQ=255) aTCCATTCGGTGTTGCTGCGCTTGATCATGTCCTTGACCGCGTCCGGGTGCCTCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTgcgc < 2:3080080/150‑1 (MQ=255) tCCATTCGGTGTTGCTGCGCTTGATCATGTCCTTGACCGCGTCCGGGTGCCTCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCa < 2:4258168/150‑1 (MQ=255) tCGGTGTTGCTGCGCTTGATCATGTCCTTGACCGCGTCCGGGTGCCTCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCa < 2:1304936/150‑1 (MQ=255) tCGGTGTTGCTGCGCTTGATCATGTCCTTGACCGCGTCCGGGTGCCTCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGCAACGCAGGctg < 2:3586184/150‑3 (MQ=255) cGGTGTTGCTGCGCTTGATCATGTCCTTGACCGCGTCCGGGTGCCTCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAg < 1:2397818/150‑1 (MQ=255) ggTGTTGCTGCGCTTGATCATGTCCTTGACCGCGTCCGGGTGCCTCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAgg > 2:723936/1‑150 (MQ=255) ggTGTTGCTGCGCTTGATCATGTCCTTGACCGCGTCCGGGTGCCTCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGCAACGCAGGctggg < 1:3891471/150‑5 (MQ=255) gtgtTGCTGCGCTTGATCATGTCCTTGACCGCGTCCGGGTGCCTCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGt > 1:1179132/1‑150 (MQ=255) gcgcTTGATCATGTCCTTGACCGCGTCCGGGTGCCTCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCg < 1:1760035/150‑1 (MQ=255) gcTTGATCATGTCCTTGACCGCGTCCGGGTGCCTCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGt < 2:14810/150‑1 (MQ=255) cTTGATCATGTCCTTGACCGCGTCCGGGTGCCTCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTg < 1:3021616/150‑1 (MQ=255) cTTGATCATGTCCTTGACCGCGTCCGGGTGCCTCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTg < 2:1563106/150‑1 (MQ=255) cTTGATCATGTCCTTGACCGCGTCCGGGTGCCTCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTg < 1:916145/150‑1 (MQ=255) cTTGATCATGTCCTTGACCGCGTCCGGGTGCCTCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTg < 2:2946241/150‑1 (MQ=255) ttGATCATGTCCTTGACCGCGTCCGGGTGCCTCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTgg < 2:1935771/150‑1 (MQ=255) ttGATCAGGTCCTTGACCGCGTCCGGGTGCCTCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTgg < 2:12574/150‑1 (MQ=255) gATCATGTCCTTGACCGCGTCCGGGTGCCTCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCa > 1:1784524/1‑150 (MQ=255) tCATGTCCTTGACCGCGTCCGGGTGCCTCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAAt < 1:503229/150‑1 (MQ=255) cATGTCCTTGACCGCGTCCGGGTGCCTCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAAtc < 2:1381978/150‑1 (MQ=255) aTGTCCTTGACCGCGTCCGGGTGCCTCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAAtcg > 1:2129525/1‑150 (MQ=255) cTTGACCGCGTCCGGGTGCCTCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCa < 2:1710028/150‑1 (MQ=255) ttGACCGCGTCCGGGTGCCTCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAg > 2:2504355/1‑150 (MQ=255) gACCGCGTCCGGGTGCCTCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAggg < 2:3529695/150‑1 (MQ=255) gcgTCCGGGTGCCTCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACCTCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTcg > 2:2452684/1‑150 (MQ=255) cGGGTGCCTCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGAt < 1:3292115/150‑1 (MQ=255) ggTGCCTCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATaa < 1:1221212/150‑1 (MQ=255) tGCCTCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGc < 1:1036926/150‑1 (MQ=255) cTCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCaaa > 1:3493997/1‑150 (MQ=255) tCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAAc > 1:3387891/1‑150 (MQ=255) tCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAAc > 2:114749/1‑150 (MQ=255) cAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACg < 2:809697/150‑1 (MQ=255) gTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCg > 1:3788955/1‑150 (MQ=255) tGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGt > 2:4028065/1‑150 (MQ=255) tGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGt < 1:100201/150‑1 (MQ=255) tGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGt > 2:1292383/1‑150 (MQ=255) gCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTAGCAGGGGTCGACGATAAGCAAACGGCGtt < 1:1274918/150‑1 (MQ=255) cAATAGCCCGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGctgctg < 1:3596589/150‑1 (MQ=255) aTAGCCCGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCa > 1:1584776/1‑150 (MQ=255) gCCCGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCATGa < 1:1866112/150‑1 (MQ=255) cccGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCg > 1:557650/1‑133 (MQ=255) cccGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCg < 2:557650/133‑1 (MQ=255) cccGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCATGAc < 1:1713459/150‑1 (MQ=255) ccGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCATGAcc < 1:3228806/150‑1 (MQ=255) ccGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCATGAcc < 2:3414736/150‑1 (MQ=255) cGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCATGACCg > 1:312411/1‑150 (MQ=255) aTCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCATGACCGATcc > 1:1327297/1‑150 (MQ=255) gCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAggg > 1:876687/1‑96 (MQ=255) gCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCATGACCGATCCTTg > 1:4138327/1‑150 (MQ=255) tgtgGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCATGACCGATCCTTGGCGcc > 1:2421659/1‑150 (MQ=255) tgtgGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCATGACCGATCCTTGGCGcc < 1:693789/150‑1 (MQ=255) gtgGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAgg < 1:982806/123‑1 (MQ=255) ggTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCATGACCGATCCTTGGCGCCAGt > 2:3845063/1‑150 (MQ=255) tCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCGGGCCAGGTCACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCATGACCGATCCTTGGCGCCAGttt > 2:3493872/1‑150 (MQ=255) tCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCATGACCGATCCTTGGCGCCAGttt > 2:2769124/1‑150 (MQ=255) cAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCATGACCGATCCTTGGCGCCAGttttt < 2:375556/150‑1 (MQ=255) cAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCATGACCGATCCTTGGCGCCAGttttt < 2:2859532/150‑1 (MQ=255) aGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCATGACCGATCCTTGGCGCCAGTTTTTg < 2:4274337/150‑1 (MQ=255) aGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCATGACCGATCCTTGGCGCCAGTTTTTGGtttt > 2:89433/1‑150 (MQ=255) ccccGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCATGACCGATCCTTGGCGCCAGTTTTTGGtttttt < 1:277465/150‑1 (MQ=255) cccGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCATGACCGATCCTTGGCGCCAGTTTTTGGTTTTTTg < 2:2883850/150‑1 (MQ=255) ccGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCATGACCGATCCTTGGCGCCAGTTTTTGGtttttt < 2:2086379/148‑1 (MQ=255) ccGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCATGACCGATCCTTGGCGCCAGTTTTTGGtttttt > 1:2086379/1‑148 (MQ=255) ccGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCATGACCGATCCTTGGCGCCAGTTTTTGGTTTTTTGa > 1:1436775/1‑150 (MQ=255) ccGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCATGACCGATCCTTGGCGCCAGTTTTTGGTTTTTTGa < 2:162916/150‑1 (MQ=255) ccGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCATGACCGATCCTTGGCGCCAGTTTTTGGTTTTTTGa > 2:4320937/1‑150 (MQ=255) cGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACCAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCATGACCGATCCTTGGCGCCAGTTTTTGGTTTTTTGaa < 2:2021150/150‑1 (MQ=255) cGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCATGACCGATCCTTGGCGCCAGTTTTTGGTTTTTTGaa < 1:864949/150‑1 (MQ=255) cGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCATGACCGATCCTTGGCGCCAGTTTTTGGTTTTTTGaa < 1:2504355/150‑1 (MQ=255) gCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCATGACCGATCCTTGGCGCCAGTTTTTg < 1:4428408/130‑1 (MQ=255) gCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCATGACCGATCCTTGGCGCCAGTTTTTg > 2:4428408/1‑130 (MQ=255) cTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCATGACCGATCCTTGGCGCCAGTTTTTGGTTTTTTGAAGTAAAACAGCa > 2:1447236/1‑150 (MQ=255) tGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCATGACCGATCCTTGGCGCCAGTTTTTGGTTTTTTGAAGTAAAACAGCaa < 2:341703/150‑1 (MQ=255) tCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCATGACCGATCCTTGGCGCCAGTTTTTGGTTTTTTGAAGTAAAACAGCAAGt > 1:1111394/1‑150 (MQ=255) tCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCATGACCGATCCTTGGCGCCAGTTTTTGGTTTTTTGAAGTAAAACAGCAAGt > 1:2493068/1‑150 (MQ=255) cacaTCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCATGACCGATCCTTGGCGCCAGTTTTTGGTTTTTTGAAGTAAAACAGCAAGTtg > 2:705545/1‑150 (MQ=255) cacaTCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCATGACCGATCCTTGGCGCCAGTTTTTGGTTTTTTGAAGTAAAACAGCAAGTtg < 1:2825942/150‑1 (MQ=255) acaTCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCATGACCGATCCTTGGCGCCAGTTTTTGGTTTTTTGAAGTAAAACAGCAAGTtgt < 2:1128266/150‑1 (MQ=255) acaTCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCATGACCGATCCTTGGCGCCAGTTTTTGGTTTTTTGAAGTAAAACAGCAAGTtgt > 1:3680504/1‑150 (MQ=255) caccccAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCATGACCGATCCTTGGCGCCAGTTTTTGGTTTTTTGAAGTAAAACAGCAAGTtgtg < 1:3689389/147‑1 (MQ=255) caacccAGCCAGCGTTGCCCAGCCCAGCTAACAAGCGGTGGCAAACCTCGCAGGGGTCCACGATAAGCAAACCGCGTTGACCGGCACGCTGCTGCATGACCGATCCTTGGCGCCAGTTTTTGCAATTTTGAAGTAAAACAGCAAGTtgtg < 2:3186254/147‑1 (MQ=255) caTCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCATGACCGATCCTTGGCGCCAGTTTTTGGTTTTTTGAAGTAAAACAGCAAGTtgtg < 2:4057571/150‑1 (MQ=255) aTCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCATGACCGATCCTTGGCGCCAGTTTTTGGTTTTTTGAAGTAAAACAGCAAGTTGTgg < 2:3888159/150‑1 (MQ=255) tCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCATGACCGATCCTTGGCGCCAGTTTTTGGTTTTTTGAAGTAAAACAGCAAGTTGTGgc > 2:3700031/1‑150 (MQ=255) ccAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCATGACCGATCCTTGGCGCCAGTTTTTGGTTTTTTGAAGTAAAACAGCAAGTTGTGgcgc > 1:3135024/1‑150 (MQ=255) cAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCATGACCGATCCTTGGCGCCAGTTTTTGGTTTTTTGAAGTAAAACAGCAAGTTGTGGCGcc > 1:3162859/1‑150 (MQ=255) cAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCATGACCGATCCTTGGCGCCAGTTTTTGGTTTTTTGAAGTAAAACAGCAAGTTGTGGCGcc > 2:1012591/1‑150 (MQ=255) cAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCATGACCGATCCTTGGCGCCAGTTTTTGGTTTTTTGAAGTAAAACAGCAAGTTGTGGCGcc < 2:1067809/150‑1 (MQ=255) cAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCATGACCGATCCTTGGCGCCAGTTTTTGGTTTTTTGAAGTAAAACAGCAAGTTGTGGCGcc < 2:2289155/150‑1 (MQ=255) cAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGACGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCATGACCGATGCTTGGCGCCAGTTTTTGGTTTTTTGAAGAAAAACAGCAAGTTGTGGCGcc > 2:2494763/1‑150 (MQ=255) ccTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCATGACCGATCCTTGGCGCCAGTTTTTGGTTTTTTGAAGTAAAACAGCAAGTTGTGGCGCCCGt > 2:1877091/1‑150 (MQ=255) tGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCATGACCGATCCTTGGCGCCAGTTTTTGGTTTTTTGAAGTAATACATCAAGTTGTGGCGCCCGttt > 2:1430220/1‑150 (MQ=255) tGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCATGACCGATCCTTGGCGCCAGTTTTTGGTTTTTTGAAGTAAAACAGCAAGTTGTGGCGCCCGttt < 1:293650/150‑1 (MQ=255) tGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCATGACCGATCCTTGGCGCCAGTTTTTGGTTTTTTGAAGTAAAACAGCAAGTTGTGGCGCCCGttt > 2:1142140/1‑150 (MQ=255) tGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCATGACCGATCCTTGGCGCCAGTTTTTGGTTTTTTGAAGTAAAACAGCAAGTTGTGGCGCCCGttt < 2:1735262/150‑1 (MQ=255) tGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCATGACCGATCCTTGGAGCCAGTTTTTGGTTTTTTGAAGTAAAACAGCAAGTTGTGGCGCCCGttt < 1:160463/150‑1 (MQ=255) | GGCAATCCATTCGGTGTTGCTGCGCTTGATCATGTCCTTGACCGCGTCCGGGTGCCTCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCATGACCGATCCTTGGCGCCAGTTTTTGGTTTTTTGAAGTAAAACAGCAAGTTGTGGCGCCCGTTTAA > NC_002947/3976208‑3976503 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |