| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,075,576 | T→C | 5.7% | intergenic (‑148/+476) | mdtA ← / ← PP_3586 | multidrug transporter membrane fusion protein/transposase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,075,576 | 0 | T | C | 5.7% | 514.1 / 13.1 | 158 | intergenic (‑148/+476) | mdtA/PP_3586 | multidrug transporter membrane fusion protein/transposase |
| Reads supporting (aligned to +/- strand): ref base T (94/55); new base C (5/4); total (99/59) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.28e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.02e-01 | |||||||||||
Only 100 of 164 total aligned reads displayed.
ATGGGTTGAACGAACCTTGTTCGGAATGACGACTTGAGGAGGATGAACGATAAGCACTGCCATCGTTTTAGCAAAGGGCCTTTACCAGAGGTTTACCTTTGCCTGACGTTGCCAAGAGGCGGAATTTTAAATGAAAACGGCCCGGAACGTGTTCCGGGCCGTTACAGGGTGTTGCTTGGAGCGGTGGCGGGCCTGAAGGTTCGGTTGCCTGGTCTGGCCCTTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTC > NC_002947/4075427‑4075725 | aTGGGTTGAACGAACCTTGTTCGGAATGACGACTTGAGGAGGATGAACGATAAGCACTGCCATCGTTTTAGCAAAGGGCCTTTACCAGAGGTTTACCTTTGCCTGACGTTGCCAAGAGGCGGAATTTTAAATGAAAACGGCCCGGAACgt < 2:154616/150‑1 (MQ=255) gTTGAACGAACCTTGTTCGGAATGACGACTTGAGGAGGATGAACGATAAGCACTGCCATCGTTTTAGCAAAGGGCCTTTACCAGAGGTTTACCTTTGCCTGACGTTGCCAAGAGGCGGAATTTTAAATGAAAACGGCCCGGAACGTGTTc > 2:3676688/1‑150 (MQ=255) ttGAACGAACCTTGTTCGGAATGACGACTTGAGGAGGATGAACGATAAGCACTGCCATCGTTTTAGCAAAGGGCCTTTACCAGAGGTTTACCTTTGCCTGACGTTGCCAAGAGGCGGAATTTTAAATGAAAACGGCCCGGAACGTGTTcc > 1:354126/1‑150 (MQ=255) ttGAACGAACCTTGTTCGGAATGACGACTTGAGGAGGATGAACGATAAGCACTGCCATCGTTTTAGCAAAGGGCCTTTACCAGAGGTTTACCTTTGCCTGACGTTGCCAAGAGGCGGAATTTTAAATGAAAACGGCCCGGAACGTGTTcc > 2:2543132/1‑150 (MQ=255) aacgaccCTTGTTCGTAATGACGACTTGCGGAGGATGAACGATAAGCACTGCCATCGTTTTCGCAACGGGCCTTTACCAGTGGTTTACCTTTGCCTGAGGTTGCCAAGAGGCGGATTTTTAAATGAAAACGGCCCGGAACACGTTCCggg < 1:4146501/150‑1 (MQ=255) aacgaacCTTGTTCGGAATGACGACTTGAGGAGGATGAACGATAAGCACTGCCATCGTTTTAGCAAAGGGCCTTTACCAGAGGTTTACCTTTGCCTGACGTTGCCAAGAGGCGGAATTTTAAATGAAAACGGCCCGGAACGTGTTCCggg > 2:3421899/1‑150 (MQ=255) acgaacCTGGGTCGGAATGACGACTTGAGGAGGATGAACGATAAGCACTGCCATCGTTTTAGCAAAGGGCCTTCCCCAGAGGTGTACCTTTGCCTGACGTTGCCAAGAGGCGGAATTTTAAATGAAAACGGCCCGGAACACGTTCCGGGc < 2:3427181/150‑1 (MQ=255) aagaacCTTGTTCGTAATGACGACTTGAGGAGGATGAACTATAAGCACTGCCATCGTTTTAGCAAAGGGCCTTTACCAGAGGTTTACCTTTGCCTGACGTTGCCAAGAGGCGTAATTTTAAATGAAAACGGCCCGGAACGTGTTCCGGGc < 2:2275840/148‑1 (MQ=255) gaacCTTGTTCGGAATGACGACTTGAGGAGGATGAACGATAAGCACTGCCATCGTTTTAGCAAAGGGCCTTTACCAGAGGTTTACCTTTGCCTGACGTTGCCAAGAGGCGGAATTTTAAATGAAAACGGCCCGGAACGTGTTCCGGGCCg > 2:3915727/1‑150 (MQ=255) ccTTGTTCGGAATGACGACTTGAGGAGGATGAACGATAAGCACTGCCATCGTTTTAGCAAAGGGCCTTTACCAGAGGTTTACCTTTGCCTGACGTTGCCAAGAGGCGGAATTTTAAATGAAAACGGCCCGGAACGTGTTCCGGGCCGttt < 2:1296441/150‑2 (MQ=255) ttCGGAATGACGACTTGAGGAGGATGAACGATAAGCACTGCCATCGTTTTAGCAAAGGGCCTTTACCAGAGGTTTACCTTTGCCTGACGTTGCCAAGAGGCGGAATTTTAAATGAAAACGGCCCGGAACGTGTTCCGGGCCGTTACAggg > 2:3496192/1‑150 (MQ=255) ggAATGACGACTTGAGGAGGATGAACGATAAGCACTGCCATCGTTTTAGCAAAGGGCCTTTACCAGAGGTTTACCTTTGCCTGACGTTGCCAAGAGGCGGAATTTTAAATGAAAACGGCCCGGAACGTGTTCCGGGCCGTTACAGGgtgt > 1:3458786/1‑150 (MQ=255) gacgccTTGAGGAGGATGAACGATACGCACGGCCATCGTTTTAGCACCGGGCCTGTACCAGAGGTTTACCTTTGCCTGACGTTGCCAAGAGGCGGAATTTTAAATGAAAACGGCCCGGAACGTGTTCCGGGCCGTTACGGGGTGTTGCtt < 2:3539176/150‑1 (MQ=255) acgacTTGAGGAGGATGAACGATAAGCACTGCCATCGTTTTAGCAAAGGGCCTTTACCAGAGGTTTACCTTTGCCTGACGTTGCCAAGAGGCGGAATTTTAAATGAAAACGGCCCGGAACGTGTTCCGGGCCGTTACAGGGTGTTGCTTg < 1:259584/150‑1 (MQ=255) acTTGAGGAGGATGAACGATAAGCACTGCCATCGTTTTAGCAAAGGGCCTTTACCAGAGGTTTACCTTTGCCTGACGTTGCCAAGAGGCGGAATTTTAAATGAAAACGGCCCGGAACGTGTTCCGGGCCGTTACAGGGTGTTGCTTGGAg < 2:3069392/150‑1 (MQ=255) ttGAGGAGGATGAACGATAAGCACTGCCATCGTTTTAGCAAAGGGCCTTTACCAGAGGTTTACCTTTGCCTGACGTTGCCAAGAGGCGGAATTTTAAATGAAAACGGCCCGGAACGTGTTCCGGGCCGTTACAGGGTGTTGTTTGGAGCg > 1:4363326/1‑150 (MQ=255) ttGAGGAGGATGAACGATAAGCACTGCCATCGTTTTAGCAAAGGGCCTTTACCAGAGGTTTACCTTTGCCTGACGTTGCCAAGAGGCGGAATTTTAAATGAAAACGGCCCGGAACGTGTTCCGGGCCGTTACAGGGTGTTGCTTGGAGCg > 1:3481275/1‑150 (MQ=255) gaggagGATGAACGATAAGCACTGCCATCGTTTTAGCAAAGGGCCTTTACCAGAGGTTTACCTTTGCCTGACGTTGCCAAGAGGCGGAATTTTAAATGAAAACGGCCCGGAACGTGTTCCGGGCCGTTACAGGGTGTTGCTTGGAGCGGt < 2:3077338/150‑1 (MQ=255) gaggagGATGAACGATAAGCACTGCCATCGTTTTAGCAAAGGGCCTTTACCAGAGGTTTACCTTTGCCTGACGTTGCCAAGAGGCGGAATTTTAAATGAAAACGGCCCGGAACGTGTTCCGGGCCGTTACAGGGTGTTGCTTGGAGCGGt < 1:3687550/150‑1 (MQ=255) ggaggaTGAACGATAAGCACTGCCATCGTTTTAGCAAAGGGCCTTTACCAGAGGTTTACCTTTGCCTGACGTTGCCAAGAGGCGGAATTTTAAATGAAAACGGCCCGGAACGTGTTCCGGGCCGTTACAGGGTGTTGCTTGGAGCGGTgg > 2:2788578/1‑150 (MQ=255) gaggaTGAACGATAAGCACTGCCATCGTTTTAGCAAAGGGCCTTTACCAGAGGTTTACCTTTGCCTGACGTTGCCAAGAGGCGGAATTTTAAATGAAAACGGCCCGGAACGTGTTCCGGGCCGTTACAGGGTGTTGCTTGGAGCGGTGGc > 1:3098029/1‑150 (MQ=255) gaTGAACGATAAGCACTGCCATCGTTTTAGCAAAGGGCC‑TTACCAGAGGTTTACCTTTGCCTGACGTTGCCAAGAGGCGGAATTTTAAATGAAAACGGCCCGGAACGTGTTCCGGGCCGTTACAGGGTGTTGCTTGGAGCGGTGGCGGGc < 2:2407596/150‑1 (MQ=255) aTGAACTATAAGCACTGCCATCGTTTTAGCAAAGGGCCTTTACCAGAGGTTTACCTTTGCCTGACGTTGCCAAGAGGCGTAATTTTAAATGAAAACGGCCCGGAACGTGTTCCGGGCCGTTACAGGGTGTTGCTTGGAGCGGTGGCGGGc < 1:2902958/150‑1 (MQ=255) gAACGATAAGCACTGCCATCGTTTTAGCACAGGGCCTTTACCAGAGGTTTACCTTTGCCTGACGTTGCCAAGAGGCGGAATTTTAAATGAAAACGGCCCGGAACGTGTTCCGGGCCGTTACAGGGTGTTGCTTGGAGCGGTGGCGGGCCt < 2:2690257/150‑1 (MQ=255) gAACGATAAGCACTGCCATCGTTTTAGCAAAGGGCCTTTACCAGAGGTTTACCTTTGCCTGACGTTGCCAAGAGGCGGAATTTTAAATGAAAACGGCCCGGAACGTGTTCCGGGCCGTTACAGGGTGTTGCTTGGAGCGGTGGCGGGCCt > 1:1188771/1‑150 (MQ=255) cGATAAGAACTGCCATCGTTTTAGCAAAGGGCCTTTACCAGAGGTTTACCTTTGCCTGACGTTGCCAAGAGGCGGAATTTTAAATGAAAACGGCCCGGAACGTGTTCCGGGCCGTTACAGGGTGTTGCTTGGAGCGGTGGCGGGCCTGaa < 2:2425707/150‑1 (MQ=255) tAAGCACTGCCATCGTTTTAGCAAAGGGCCTTTACCAGAGGTTTACCTTTGCCTGACGTTGCCAAGAGGCGGAATTTTAAATGAAAACGGCCCGGAACGTGTTCCGGGCCGTTACAGGGTGTTGCTTGGAGCGGTGGCGGGCCTGAAGGt > 2:1602392/1‑150 (MQ=255) tAAGCACTGCCATCGTTTTAGCAAAGGGCCTTTACCAGAGGTTTACCTTTGCCTGACGTTGCCAAGAGGCGGAATTTTAAATGAAAACGGCCCGGAACGTGTTCCGGGCCGTTACAGGGTGTTGCTTGGAGCGGTGGCGGGCCGGAAGGt > 2:3877930/1‑150 (MQ=255) aaGCACTGCCATCGTTTTAGCAAAGGGCCTTTACCAGAGGTTTACCTTTGCCTGACGTTGCCAAGAGGCGGAATTTTAAATGAAAACGGCCCGGAACGTGTTCCGGGCCGTTACAGGGTGTTGCTTGGAGCGGTGGCGGGCCTGAAGGtt < 2:444979/150‑1 (MQ=255) cccTGCCATCGTTTTAGCAAAGGGCCTTTACCAGAGGTTTACCTTTGCCTGACGTTGCCAAGAGGCGGAATTTTAAATGAAAACGGCCCGGAACGTGTTCCGGGCCGTTACAGGGTGTTGGTTGGTGCGGTGGCGGGCCTGAATGTTctg < 2:3755099/148‑3 (MQ=255) cACTGCCATCGTTTTAGCAAAGGGCCTTTACCAGAGGTTTACCTTTGCCTGACGTTGCCAAGAGGCGGAATTTTAAATGAAAACGGCCCGGAACGTGTTCCGGGCCGTTACAGGGTGTTGCTTGGAGCGGTGGCGGGCCTGAAGGTTCgg > 2:1867788/1‑150 (MQ=255) cACTGCCATCGTTTTAGCAAAGGGCCTTTACCAGAGGTTTACCTTTGCCTGACGTTGCCAAGAGGCGGAATTTTAAATGAAAACGGCCCGGAACGTGTTCCGGGCCGTTACAGGGTGTTGCTTGGAGCGGTGGCGGGCCTGAAGGTTCgg > 2:1867812/1‑150 (MQ=255) aCTGCCATCGTTTTAGCAAAGGGCCTTTACCAGAGGTTTACCTTTGCCTGACGTTGCCAAGAGGCGGAATTTTAAATGAAAACGGCCCGGAACGTGTTCCGGGCCGTTACAGGGTGTTGCTTGGAGCGGTGGCGGGCCTGAAGGTTCGGt > 1:494316/1‑150 (MQ=255) cTGCCATCGTTTTAGCAAAGGGCCTTTACCAGAGGTTTACCTTTGCCTGACGTTGCCAAGAGGCGGAATTTTAAATGAAAACGGCCCGGAACGTGTTCCGGGCCGTTCCAGGGTGTTGCTTGGAGCGGTGGCGGGCCTGTAGGTTCGGtt > 2:863054/1‑150 (MQ=255) gCCATCGTTTTAGCAAAGGGCCTTTACCAGAGGTTTACCTTTGCCTGACGTTGCCAAGAGGCGGAATTTTAAATGAAAACGGCCCGGAACGTGTTCCGGGCCGTTACAGGGTGTTGCTTGGAGCGGTGGCGGGCCTGAAGGTTCGGTTGc < 2:112985/150‑1 (MQ=255) cATCGTTTTAGCAAAGGGCCTTTACCAGAGGTTTACCTTTGCCTGACGTTGCCAAGAGGCGGAATTTTAAATGAAAACGGCCCGGAACGTGTTCCGGGCCGTTACAGGGTGTTGCTTGGAGCGGTGGCGGGCCTGAAGGTTCGGTTGCCt > 1:1609545/1‑150 (MQ=255) aTCGTTTTAGCAAAGGGCCTTTACCAGAGGTTTACCTTTGCCTGACGTTGCCAAGAGGCGGAATTTTAAATGAAAACGGCCCGGAACGTGTTCCGGGCCGTTACAGGGTGTTGCTTGGAGCGGTGGCGGGCCTGAAGGTTCGGTTGCCTg > 2:3799630/1‑150 (MQ=255) aTCGTTTTAGCAAAGGGCCTTTACCAGAGGTTTACCTTTGCCTGACGTTGCCAAGAGGCGGAATTTTAAATGAAAACGGCCCGGAACGTGTTCCGGGCCGTTACAGGGTGTTGCTTGGAGCGGTGGCGGGCCTGAAGGTTCGGTTGCCTg > 2:562516/1‑150 (MQ=255) tCGTTTTAGCAAAGGGCCTTTACCAGAGGTTTACCTTTGCCTGACGTTGCCAAGAGGCGGAATTTTAAATGAAAACGGCCCGGAACGTGTTCCGGGCCGTTACAGGGTGTTGCTTGGAGCGGTGGCGGGCCTGAAGGTTCGGTTTCCTgg > 2:3709254/1‑150 (MQ=255) cGTTTTAGCAAAGGGCCTTTACCAGAGGTTTACCTTTGCCTGACGTTGCCAAGAGGCGGAATTTTAAATGAAAACGGCCCGGAACGTGTTCCGGGCCGTTACAGGGTGTTGCTTGGAGCGGTGGCGGGCCTGAAGGTTCGGTTGCCTGGt < 2:2553283/150‑1 (MQ=255) cGTTTTAGCAAAGGGCCTTTACCAGAGGTTTACCTTTGCCTGACGTTGCCAAGAGGCGGAATTTTAAATGAAAACGGCCCGGAACGTGTTCCGGGCCGTTACAGGGTGTTGCTTGGAGCGGTGGCGGGCCTGAAGGTTCGGTTGCCTGGt < 2:700824/150‑1 (MQ=255) gTTTTAGCAAAGGGCCTTTACCAGAGGTTTACCTTTGCCTGACGTTGCCAAGAGGCGGAATTTTAAATGAAAACGGCCCGGAACGTGTTCCGGGCCGTTACAGGGTGTTGCTTGGAGCGGTGGCGGGCCTGAAGGTTCGGTTGCCTGGTc > 1:1340571/1‑150 (MQ=255) gTTTTAGCAAAGGGCCTTTACCAGAGGTTTACCTTTGCCTGACGTTGCCAAGAGGCGGAATTTTAAATGAAAACGGCCCGGAACGTGTTCCGGGCCGTTACAGGGTGTTGCTTGGAGCGGTGGCGGGCCTGAAGGTTCGGTTGCCTGGTc > 1:2844501/1‑150 (MQ=255) ttttAGCAAAGGGCCTTTACCAGAGGTTTACCTTTGCCTGACGTTGCCAAGAGGCGGAATTTTAAATGAAAACGGCCCGGAACGTGTTCCGGGCCGTTACAGGGTGTTGCTTGGAGCGGTGGCGGGCCTGAAGGTTCGGTTGCCTGGTCt > 1:1825492/1‑150 (MQ=255) ttttAGCAAAGGGCCTTTACCAGAGGTTTACCTTTGCCTGACGTTGCCAAGAGGCGGAATTTTAAATGAAAACGGCCCGGAACGTGTTCCGGGCCGTTACAGGGTGTTGCTTGGAGCGGTGGCGGGCCTGAAGGTTCGGTTGCCTGGTCt > 2:1617289/1‑150 (MQ=255) ttttAGCAAAGGGCCTTTACCAGAGGTTTACCTTTGCCTGACGTTGCCAAGAGGCGGAATTTTAAATGAAAACGGCCCGGAACGTGTTCCGGGCCGTTACAGGGTGTTGCTTGGAGCGGTGGCGGGCCTGAAGGTTCGGTTGCCTGGTCt < 1:1366352/150‑1 (MQ=255) tAGCAACGGGCCTTTACCAGAGGTTTACCTTTGCCTGACGTTGCCAAGAGGCGGAATTTTAAATGAAAACGGCCCGGAACGTGTTCCGGGCCGTTACAGGGTGTTGCTTGGAGCGGTGGCGGGCCTGAAGGTTCGGTTGCCTGGTCTGGc < 1:3148518/150‑1 (MQ=255) tAGCAAAGGGCCTTTACCAGAGGTTTACCTTTGCCTGACGTTGCCAAGAGGCGGAATTTTAAATGAAAACGGCCCGGAACGTGTTCCGGGCCGTTACAGGGTGTTGCTTGGAGCGGTGGCGGGCCTGAAGGTTCGGTTGCCTGGTCTGGc < 1:160400/150‑1 (MQ=255) cAAAGGGCCTTTACCAGAGGTTTACCTTTGCCTGACGTTGCCAAGAGGCGGAATTTTAAATGAAAACGGCCCGGAACGTGTTCCGGGCCGTTACAGGGTGTTGCTTGGAGCGGTGGCGGGCCTGAAGGTTCGGTTGCCTGGTCTGGCCCt > 2:1801704/1‑150 (MQ=255) aaaGGGCCTTTACCAGAGGTTTACCTTTGCCTGACGTTGCCAAGAGGCGGAATTTTAAATGAAAACGGCCCGGAACGTGTTCCGGGCCGTTACAGGGTGTTGCTTGGAGCGGTGGCGGGCCTGAAGGTTCGGTTGCCTGGTCTGGCCCtt > 1:2110173/1‑150 (MQ=255) aaaGGGCCTTTACCAGAGGTTTACCTTTGCCTGACGTTGCCAAGAGGCGGAATTTTAAATGAAAACGGCCCGGAACGTGTTCCGGGCCGTTACAGGGTGTTGCTTGGAGCGGTGGCGGGCCTGAAGGTTCGGTTGCCTGGTCTGGCCCtt > 2:484244/1‑150 (MQ=255) cTTTACCAGAGGTTTACCTTTGCCTGACGTTGCCAAGAGGCGGAATTTTAAATGAAAACGGCCCGGAACGTGTTCCGGGCCGTTACAGGGTGTTGCTTGGAGCGGTGGCGGGCCTGAAGGTTCGGTTGCCTGGTCTGGCCCTTTCGCggg > 1:3994166/1‑150 (MQ=255) tttACCAGAGGTTTACCTTTGCCTGACGTTGCCAAGAGGCGGAATTTTAAATGAAAACGGCCCGGAACGTGTTCCGGGCCGTTACAGGGTGTTGCTTGGAGCGGTGGCGGGCCTGAAGGTTCGGTTGCCTGGTCTGGCCCTTTCGCGGGt > 1:4268339/1‑150 (MQ=255) tttACCAGAGGTTTACCTTTGCCTGACGTTGCCAAGAGGCGGAATTTTAAATGAAAACGGCCCGGAACGTGTTCCGGGCCGTTACAGGGTGTTGCTTGGAGCGGTGGCGGGCCTGAAGGTTCGGTTGCCTGGTCTGGCCCTTTCGCGGGt > 2:3963475/1‑150 (MQ=255) cAGAGGTTTACCTTTGCCTGACGTTGCCAAGAGGCGGAATTTTAAATGAAAACGGCCCGGAACGTGTTCCGGGCCGTTACAGGGTGTTGCTTGGAGCGGTGGCGGGCCTGAAGGTTCGGTTGCCTGGTCTGGCCCTTTCGCGGGTGAAcc > 2:2109148/1‑150 (MQ=255) agagGTTTACCTTTGCCTGACGTTGCCAAGAGGCGGAATTTTAAATGAAAACGGCCCGGAACGTGTTCCGGGCCGTTACAGGGTGTTGCTTGGAGCGGTGGCGGGCCTGAAGGTTCGGTTGCCTGGTCTGGCCCTTTCGCGGGTGAAccc > 2:2931344/1‑150 (MQ=255) gTTTACCTTTGCCTGACGTTGCCAAGAGGCGGAATTTTAAATGAAAACGGCCCGGAACGTGTTCCGGGCCGTTACAGGGTGTTGCTTGGAGCGGTGGCGGGCCTGAAGGTTCGGTTGCCTGGTCTGGCCCTTTCGCgg < 2:3233161/138‑1 (MQ=255) gTTTACCTTTGCCTGACGTTGCCAAGAGGCGGAATTTTAAATGAAAACGGCCCGGAACGTGTTCCGGGCCGTTACAGGGTGTTGCTTGGAGCGGTGGCGGGCCTGAAGGTTCGGTTGCCTGGTCTGGCCCTTTCGCgg > 1:3233161/1‑138 (MQ=255) gTTTACCTTTGCCTGACGTTGCCAAGAGGCGGAATTTTAAATGAAAACGGCCCGGAACGTGTTCCGGGCCGTTACAGGGTGTTGCTTGGAGCGGTGGCGGGCCTGAAGGTTCGGTTGCCTGGTCTGGCCCTTTCGCGGGTGAACCCGCtt > 2:239057/1‑150 (MQ=255) ttACCTTGGCCTGACGTTGCCAAGAGGCGGAATTTTAAATGAAAACGGCCCGGAACGTGTTCCGGGCCGTTACAGGGTGTTGCTTGGAGCGGTGGCGGGCCTGAAGGTTCGGTTGCCTGGTCTGGCCCTTTCGCGGGTGAACCCGCTTCt < 1:3032541/150‑1 (MQ=255) cTTTGCCTGACGTTGCCAAGAGGCGGAATTTTAAATGAAAACGGCCCGGAACGTGTTCCGGGCCGTTACAGGGTGTTGCTTGGAGCGGTGGCGGGCCAGAAGGTTCGGTTGCCTGGTCTGGCCCTTTCGCGGGTGAACCCGCTTCTATca > 1:3548513/1‑150 (MQ=255) tttGCCTGACGTTGCCAAGAGGCGGAATTTTAAATGAAAACGGCCCGGAACGTGTTCCGGGCCGTTACAGGGTGTTGCTTGGAGCGGTGGCGGGCCTGAAGGTTCGGTTGCCTGGTCTGGCCCTTTCGCGGGTGAACCCGCTTCTATcaa > 1:1577261/1‑150 (MQ=255) gCCTGACGTTGCCAAGAGGCGGAATTTTAAATGAAAAAGGCCCGGAACCTGTTCCTGGCCGTTACAGGTGGTTGCTTGGAGCGGTGGCGGGACTGAAGGTTCGGTTGCCTGGTCTGGCCCTTTCGCGGGTGAACCCGCTTCTATcaaaca > 2:1575855/1‑150 (MQ=255) ccTGACGTTGCCAAGAGGCGGAATTTTAAATGAAAACGGCCCGGAACGTGTTCCGGGCCGTTACAGGGTGTTGCTTGGAGCGGTGGCGGGCCTGAAGGTTCGGTTGCCTGGTCTGGCCCTTTCGCGGGTGAACCCGCTTCTATcaaacaa > 2:852450/1‑150 (MQ=255) tGACGTTGCCAAGAGGCGGAATTTTAAATGAAAACGGCCCGGAACGTGTTCCGGGCCGTTACAGGGTGTTGCTTGGAGCGGTGGCGGGCCTGAAGGTTCGGTTGCCTGGTCTGGCCCTTTCGCGGGTGAACCCGCTTCTATCAAACaaaa > 1:1873508/1‑150 (MQ=255) gTTGCCAAGAGGCGGAATTTTAAATGAAAACGGCCCGGAACGTGTTCCGGGCCGTTACAGGGTGTTGCTTGGAGCGGTGGCgg > 1:1019124/1‑83 (MQ=255) gTTGCCAAGAGGCGGAATTTTAAATGAAAACGGCCCGGAACGTGTTCCGGGCCGTTACAGGGTGTTGCTTGGAGCGGTGGCgg < 2:1019124/83‑1 (MQ=255) ccAAGAGGCGGAATTTTAAATGAAAACGGCCCGGAACGTGTTCCGGGCCGTTACAGGGTGTTGCTTGGAGCGGTGGCGGGCCTGAAGGTTCGGTTGCCTGGTCTGGCCCTTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAAccc > 2:2994424/1‑150 (MQ=255) ccAAGAGGCGGAATTTTAAATGAAAACGGCCCGGAACGTGTTCCGGGCCGTTACAGGGTGTTGCTTGGAGCGGTGGCGGGCCTGAAGGTTCGGTTGCCTGGTCTGGCCCTTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAAccc > 1:1762091/1‑150 (MQ=255) cGGAATTTTAAATGAAAACGGCCCGGAACGTGTTCCGGGCCGTTACAGGGTGTTGCTTGGAGCGGTGGCGGGCCTGAAGGTTCGGTTGCCTGGTCTGGCCCTTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGttct < 1:3676688/150‑1 (MQ=255) ggAATTTTAAATGAAAACGGCCCGGAACGTGTTCCGGGCCGTTACAGGGTGTTGCTTGGAGCGGTGGCGGGCCTGAAGGTTCGGTTGCCTGGTCTGGCCCTTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGttctt > 1:862395/1‑150 (MQ=255) aTTTTAAATGAAAACGGCCCGGAACGTGTTCCGGGCCGTTACAGGGTGTTGCTTGGAGCGGTGGCGGGCCTGAAGGTTCGGTTGCCTGGTCTGGCCCTTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGttctttct < 1:3945839/150‑1 (MQ=255) ttttAAATGAAAACGGCCCGGAACGTGTTCCGGGCCGTTACAGGGTGTTGCTTGGAGCGGTGGCGGGCCTGAAGGTTCGGTTGCCTGGTCTGGCCCTTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTa < 2:4259062/150‑1 (MQ=255) ttAAATGAAAACGGCCCGGAACGTGTTCCGGGCCGTTACAGGGTGTTGCTTGGAGCGGTGGCGGGCCTGAAGGTTCGGTTGCCTGGTCTGGCCCTTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGc > 2:3214208/1‑150 (MQ=255) tGAAAACGGCCCGGAACGTGTTCCGGGCCGTTACAGGGTGTTGCTTGGAGCGGTGGCGGGCCTGAAGGTTCGGTTGCCTGGTCTGGCCCTTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGaaaa > 2:1516181/1‑150 (MQ=255) tGAAAACGGCCCGGAACGTGTTCCGGGCCGTTACAGGGTGTTGCTTGGAGCGGTGGCGGGCCTGAAGGTTCGGTTGCCTGGTCTGGCCCTTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGaaaa > 1:2050326/1‑150 (MQ=255) tGAAAACGGCCCGGAACGTGTTCCGGGCCGTTACAGGGTGTTGCTTGGAGCGGTGGCGGGCCTGAAGGTTCGGTTGCCTGGTCTGGCCCTTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGaaaa > 2:2337435/1‑150 (MQ=255) gAAAACGCCCCGGAACGTGTTCCGGGCCGTTACAGGGTGTTGCTTGGAGCGGTGGCGGGCCTGAAGGTTCGGTTGCCTGGTCTGGCCCTTTCGCGGGTGAACCCGATTCTATCAAACACAAGATAACCCACTGTTCTTACTAGCGaaaaa > 2:4476770/1‑150 (MQ=255) aaaCGGCCCGGAACGTGTTCCGGGCCGTTACAGGGTGTTGCTTGGAGCGGTGGCGGGCCTGAAGGTTCGGTTGCCTGGTCTGGCCCTTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGaaaaaaa < 2:1084667/150‑1 (MQ=255) cGGCCCGGAACGTGTTCCGGGCCGTTACAGGGTGTTGCTTGGAGCGGTGGCGGGCCTGAAGGTTCGGTTGCCTGGTCTGGCCCTTTCGCGGGTGAACCCGCTTCTATCAAACAAGAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAg < 1:1835086/150‑1 (MQ=255) cGGCCCGGAACGTGTTCCGGGCCGTTACAGGGTGTTGCTTGGAGCGGTGGCGGGCCTGAAGGTTCGGTTGCCTGGTCTGGCCCTTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAg < 1:3370363/150‑1 (MQ=255) ggCCCGGAACGTGTTCCGGGCCGTTACAGGGTGTTGCTTGGAGCGGTGGCGGGCCTGAAGGTTCGGTTGCCTGGTCTGGCCCTTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAgg > 2:851765/1‑150 (MQ=255) ggCCCGGAACGTGTTCCGGGCCGTTACAGGGTGTTGCTTGGAGCGGTGGCGGGCCTGAAGGTTCGGTTGCCTGGTCTGGCCCTTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAgg > 2:84609/1‑150 (MQ=255) ggCCCGGAACGTGTTCCGGGCCGTTACAGGGTGTTGCTTGGAGCGGTGGCGGGCCTGAAGGTTCGGTTGCCTGGTCTGGCCCTTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAgg > 2:2339086/1‑150 (MQ=255) ggCCCGGAACGTGTTCCGGGCCGTTACAGGGTGTTGCTTGGAGCGGTGGCGGGCCTGAAGGTTCGGTTGCCTGGTCTGGCCCTTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAgg > 2:4324987/1‑150 (MQ=255) ggCCCGGAACACGTTCCGGGCCGTTACAGGGTGTTGCTTGGAGCGGTGGCGGGCCTGAAGGTTCGGTTGCCTGGTCTGGCCCTTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAgg > 1:4415879/1‑150 (MQ=255) gCCCGGAACGTGTTCCGGGCCGTTACAGGGTGTTGCTTGGAGCGGTGGCGGGCCTGAAGGTTCGGTTGCCTGGTCTGGCCCTTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGgc < 2:1618476/150‑1 (MQ=255) gCCCGGAACGTGTTCCGGGCCGTTACAGGGTGTTGCTTGGAGCGGTGGCGGGCCTGAAGGTTCGGTTGCCTGGTCTGGCCCTTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGgc < 2:75763/150‑1 (MQ=255) gCCCGGAACACGTTCCGGGCCGTTACAGGGTGTTGCTTGGAGCGGTGGCGGGCCTGAAGGTTCGGTTGCCTGGTCTGGCCCTTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGgc > 1:3713537/1‑150 (MQ=255) cccGGAACGTGTTCCGGGCCGTTACAGGGTGTTGCTTGGAGCGGTGGCGGGCCTGAAGGTTCGGTTGCCTGGTCTGGCCCTTTCGCggg > 2:3090514/1‑89 (MQ=255) cccGGAACGTGTTCCGGGCCGTTACAGGGTGTTGCTTGGAGCGGTGGCGGGCCTGAAGGTTCGGTTGCCTGGTCTGGCCCTTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGgcg > 2:2310821/1‑150 (MQ=255) cccGGAACGTGTTCCGGGCCGTTACAGGGTGTTGCTTGGAGCGGTGGCGGGCCTGAAGGTTCGGTTGCCTGGTCTGGCCCTTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGgcg > 1:2173537/1‑150 (MQ=255) cccGGAACACGTTCCGGGCCGTTACAGGGTGTTGCTTGGAGCGGTGGCGGGCCTGAAGGTTCGGTTGCCTGGTCTGGCCCTTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGgcg > 2:1580519/1‑150 (MQ=255) cccGGAACACGTTCCGGGCCGTTACAGGGTGTTGCTTGGAGCGGTGGCGGGCCTGAAGGTTCGGTTGCCTGGTCTGGCCCTTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGgcg > 1:3815588/1‑150 (MQ=255) ccGGAACGTGTTCCGGGCCGTTACAGGGTGTTGCTTGGAGCGGTGGCGGGCCTGAAGGTTCGGTTGCCTGGTCTGGCCCTTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGgcgc > 1:2076957/1‑150 (MQ=255) ccGGAACGTGTTCCGGGCCGTTACAGGGTGTTGCTTGGAGCGGTGGCGGGCCTGAAGGTTCGGTTGCCTGGTCTGGCCCTTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGgcgc < 1:4507688/150‑1 (MQ=255) ccGGAACGTGTTCCGGGCCGTTACAGGGTGTTGCTTGGAGCGGTGGCGGGCCTGAAGGTTCGGTTGCCTGGTCTGGCCCTTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGgcgc > 1:4399687/1‑150 (MQ=255) gAACGTGTTCCGGGCCGTTACAGGGTGTTGCTTGGAGCGGTGGCGGGCCTGAAGGTTCGGTTGCCTGGTCTGGCCCTTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGcgcgcg > 2:2164291/1‑150 (MQ=255) gtgtTCCGGGCCGTTACAGGGTGTTGCTTGGAGCGGTGGCGGGCCTGAAGGTTCGGTTGCCTGGTCTGGCCCTTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGt > 1:2642368/1‑150 (MQ=255) gtgtTCCGGGCCGTTACAGGGTGTTGCTTGGAGCGGTGGCGGGCCTGAAGGTTCGGTTGCCTGGTCTGGCCCTTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGt > 1:2107274/1‑150 (MQ=255) | ATGGGTTGAACGAACCTTGTTCGGAATGACGACTTGAGGAGGATGAACGATAAGCACTGCCATCGTTTTAGCAAAGGGCCTTTACCAGAGGTTTACCTTTGCCTGACGTTGCCAAGAGGCGGAATTTTAAATGAAAACGGCCCGGAACGTGTTCCGGGCCGTTACAGGGTGTTGCTTGGAGCGGTGGCGGGCCTGAAGGTTCGGTTGCCTGGTCTGGCCCTTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTC > NC_002947/4075427‑4075725 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |