| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,432,050 | T→G | 5.8% | intergenic (+37/‑147) | PP_3924 → / → PP_3925 | hypothetical protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,432,050 | 0 | T | G | 5.8% | 583.9 / 19.9 | 174 | intergenic (+37/‑147) | PP_3924/PP_3925 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (70/93); new base G (6/4); total (76/98) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.38e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.34e-01 | |||||||||||
Only 100 of 175 total aligned reads displayed.
GGTATCGTAAGCGGCGAAACCGACGGCATGCAGGCCTTCATGGGTGGCAAGCTGCGGGTTGAAGGCGACATGATGCTGTCGATGAAACTCAGCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGACCATTAGATTACCCAATAGTACTTGCTATCGAGAATAAGGAAGACGCATG > NC_002947/4431903‑4432199 | aaGCGGCGAAACCGACGGCATGCAGGCCTTCATGGGTGGCAAGCTGCGGGTTGAAGGCGACATGATGCTGTCGATGAAACTCAGCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCg < 1:2711402/150‑1 (MQ=255) aGCGGCGAAACCGACGGCATGCAGGCCTTCATGGGTGGCAAGCTGCGGGTTGAAGGCGACATGATGCTGTCGATGAAACTCAGCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCgg < 2:4340343/150‑1 (MQ=255) aGCGGCGAAACCGACGGCATGCAGGCCTTCATGGGTGGCAAGCTGCGGGTTGAAGGCGACATGATGCTGTCGATGAAACTCAGCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCGTCAGGCTTCgg < 1:4115644/150‑1 (MQ=255) cggcgAAACCGACGGCATGCAGGCCTTCATGGGTGGCAAGCTGCGGGTTGAAGGCGACATGATGCTGTCGATGAAACTCAGCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCGTCAGGCTTCGG‑tt < 2:1604896/150‑1 (MQ=255) ggcgAAACCGACGGCATGCAGGCCTTCATGGGTGGCAAGCTGCGGGTTGAAGGCGACATGATGCTGTCGATGAAACTCAGCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑ttt < 1:3401590/150‑1 (MQ=255) cgAAACCGACGGCATGCAGGCCTTCATGGGTGGCAAGCTGCGGGTTGAAGGCGACATGATGCTGTCGATGAAACTCAGCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑ttttt < 1:1290094/150‑1 (MQ=255) aaaCCGACGGCATGCAGGCCTTCATGGGTGGCAAGCTGCGGGTTGAAGGCGACATGATGCTGTCGATGAAACTCAGCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑ttttttt > 2:2192803/1‑150 (MQ=255) ccGACGGCATGCAGGCCTTCATGGGTGGCAAGCTGCGGGTTGAAGGCGACATGATGCTGTCGATGAAACTCAGCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGc < 1:3730177/150‑1 (MQ=255) cGACGGCATGCAGGCCTTCATGGGTGGCAAGCTGCGGGTTGAAGGCGACATGATGCTGTCGATGAAACTCAGCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGcc > 1:648847/1‑150 (MQ=255) aCGGCATGCAGGCCTTCATGGGTGGCAAGCTGCGGGTTGAAGGCGACATGATGCTGTCGATGAAACTCAGCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCt < 1:1500921/150‑1 (MQ=255) ggCATGCAGGCCTTCATGGGTGGCAAGCTGCGGGTTGAAGGCGACATGATGCTGTCGATGAAACTCAGCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGc < 2:1271249/150‑1 (MQ=255) aTGCAGGCCTTCATGGGTGGCAAGCTGCGGGTTGAAGGCGACATGATGCTGTCGATGAAACTCAGCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCAtt > 2:607894/1‑150 (MQ=255) gCAGGCCTTCATGGGTGGCAAGCTGCGGGTTGAAGGCGACATGATGCTGTCGATGAAACTCAGCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCg < 2:1354783/150‑1 (MQ=255) gCCTTCATGGGTGGCAAGCTGCGGGTTGAAGGCGACATGATGCTGTCGATGAAACTCAGCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGc > 1:3079236/1‑150 (MQ=255) gCCTTCATGGGTGGCAAGCTGCGGGTTGAAGGCGACATGATGCTGTCGATGAAACTCAGCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGc < 2:1225347/150‑1 (MQ=255) ccTTCATGGGTGGCAAGCTGCGGGTTGAAGGCGACATGATGCTGTCGATGAAACTCAGCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCa < 1:3242170/150‑1 (MQ=255) ccTTCATGGGTGGCAAGCTGCGGGTTGAAGGCGACATGATGCTGTCGATGAAACTCAGCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCa < 2:1608966/150‑1 (MQ=255) ccTTCATGGGTGGCAAGCTGCGGGTTGAAGGCGACATGATGCTGTCGATGAAACTCAGCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCa < 1:2070185/150‑1 (MQ=255) ttCATGGGTGGCAAGCTGCGGGTTGAAGGCGACATGATGCTGTCGATGAAACTCAGCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGt < 1:1518356/150‑1 (MQ=255) aTGGGTGGCAAGCTGCGGGTTGAAGGCGACATGATGCTGTCGATGAAACTCAGCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGAt > 2:2281724/1‑150 (MQ=255) gggTGGCAAGCTGCGGGTTGAAGGCGACATGATGCTGTCGATGAAACTCAGCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATcc > 1:2390220/1‑150 (MQ=255) tGGCAAGCTGCGGGTTGAAGGCGACATGATGCTGTCGATGAAACTCAGCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATccacc < 1:3348723/150‑1 (MQ=255) tGGCAAGCTGCGGGTTGAAGGCGACATGATGCTGTCGATGAAACTCAGCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTAGGTCAAGTGATccaac > 1:959437/1‑148 (MQ=255) gCAAGCTGCGGGTTGAAGGCGACATGATGCTGTCGATGAAACTCAGCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAg < 1:3055679/150‑1 (MQ=255) cAAGCTGCGGGTTGAAGGCGACATGATGCTGTCGATGAAACTCAGCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGc < 1:226943/150‑1 (MQ=255) ttGAAGGCGACATGATGCTGTCGATGAAACTCAGCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCAc > 2:4027741/1‑150 (MQ=255) aaGGCGACATGATGCTGTCGATGAAACTCAGCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTa < 1:107804/150‑1 (MQ=255) gCGACATGATGCTGTCGATGAAACTCAGCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTTCCCGGCATTGGGTGCAGTGATCCACCAGCAACACCCACAACGAttt > 1:1613077/1‑150 (MQ=255) gCGACATGATGCTGTCGATGAAACTCAGCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTAttt < 2:4509002/150‑1 (MQ=255) gCGACATGATGCTGTCGATGAAACTCAGCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTAttt < 1:3582912/150‑1 (MQ=255) gCGACATGATGCTGTCGATGAAACTCAGCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTAttt < 2:4329292/150‑1 (MQ=255) cGACATGATGCTGTCGATGAAACTCAGCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTg > 1:632730/1‑150 (MQ=255) gatgCTGTCGATGAAACTCAGCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACAt > 2:314894/1‑150 (MQ=255) tgCTGTCGATGAAACTCAGCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATgg > 1:2758425/1‑150 (MQ=255) tgCTGTCGATGAAACTCAGCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATgg > 2:2298811/1‑150 (MQ=255) tgCTGTCGATGAAACTCAGCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATgg < 1:1654926/150‑1 (MQ=255) cTGTCGATGAAACTCAGCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGa < 2:3238165/150‑1 (MQ=255) cTGTCGATGAAACTCAGCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGa < 1:444627/150‑1 (MQ=255) aTGAAACTCAGCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCACACCGATTTGGCACATGGGACGATTg > 1:120494/1‑150 (MQ=255) tGAAACTCAGCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGt > 2:4028534/1‑150 (MQ=255) gAAACTCAGCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGtt < 1:1174634/150‑1 (MQ=255) aaaCTCAGCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTc > 2:139398/1‑150 (MQ=255) aaaCTCAGCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTc > 2:1160689/1‑150 (MQ=255) aaCTCAGCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTcc < 2:850192/150‑1 (MQ=255) tCAGCGGGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTATTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAAc < 1:4240588/150‑1 (MQ=255) tCAGCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAAc > 1:2829189/1‑150 (MQ=255) tcGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGAACGAAAAACCGAAGCCAGACGGCTTCGG‑TAATTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCt < 2:4131047/149‑1 (MQ=255) gCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCt < 1:1145853/150‑1 (MQ=255) tGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCGTCAGGCTTCGG‑tttttc < 1:594088/68‑2 (MQ=21) gTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGAc < 2:3719790/150‑1 (MQ=255) ttCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGAcc < 1:1701802/150‑1 (MQ=255) ttCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGAcc > 2:4150738/1‑150 (MQ=255) cccGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGACCAt > 1:3895869/1‑150 (MQ=255) cccGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGACCAt < 2:4477720/150‑1 (MQ=255) ccGTCCTGAGGGCTGGGAATACCGGTTGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGACCAtt > 2:1462193/1‑150 (MQ=255) ccGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGACCAtt < 1:1723242/150‑1 (MQ=255) cGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGACCATTa < 2:1038269/150‑1 (MQ=255) cGTCCTGAGGCCTGGGACTACCGGACGCTCGAACCACCGCAGCCTGCCGGCTTCGG‑TTTTTTTGGCCCGGCATTCGGTGCAGTGATCCACCAGCAACACCCTCCCCTAGTTGGCACAGGGGACGATTGTGCCAACCCTGGCGGACCATTa < 2:4030764/150‑1 (MQ=255) tCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGACCATTAGa < 2:3947622/150‑1 (MQ=255) tCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGACCATTAGa < 2:2028600/150‑1 (MQ=255) tCCAGAGGGCTGGGAATACCGGATGATCGAAAAACCCAAGCCTGACGGCTACGG‑ATATTTTTGCCCTGCATTCGGTGCAGTGATCCACCACCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGACCATTAGa < 2:3404979/150‑1 (MQ=255) aGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGACCATTAGATTAcc < 1:3888958/150‑1 (MQ=255) gggCGGGGATTCCGGGATGATCGAAATAGCGAAGCGGTAGGGCGTGGG‑TTTTTTTTGCCCTTCATTCGGTGCCGTGTTCGACCAGCTACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGACCATTAGTTTaggg < 2:2602272/150‑4 (MQ=255) ggCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGC‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGACCATTAGATTACCCa > 2:697464/1‑150 (MQ=255) gCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCGTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGACCATTAGATTACCCaa > 1:586732/1‑150 (MQ=255) cTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGACCATTAGATTACCCAAt < 1:2806717/150‑1 (MQ=255) tGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGACCATTAGATTACCCAATa > 1:3766598/1‑150 (MQ=255) tGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGACCATTAGATTACCCAATa < 1:363237/150‑1 (MQ=255) tGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGACCATTAGATTACCCAATa > 2:173041/1‑150 (MQ=255) tGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGACCATTAGATTACCCAATa < 1:1921078/150‑1 (MQ=255) tGGCAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGACCATTAGATTACCCAATa < 1:428662/150‑1 (MQ=255) ggAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTc > 1:1131402/1‑89 (MQ=255) ggAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTc < 2:1131402/89‑1 (MQ=255) aCCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGACCATTAGATTACCCAATAGTACTTg < 1:746964/150‑1 (MQ=255) cGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGACCATTAGATTACCCAATAGTACTTGCt > 1:1254426/1‑150 (MQ=255) ggATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGACCATTAGATTACCCAATAGTACTTGCTa > 1:2528898/1‑150 (MQ=255) atgatCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGACCATTAGATTACCCAATAGTACTTGCTATc < 1:3628724/150‑1 (MQ=255) gatCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGACCATTAGATTACCCAATAGTACTTGCTATCga < 2:648847/150‑1 (MQ=255) gatCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGACCATTAGATTACCCAATAGTACTTGCTATCga < 1:1461685/150‑1 (MQ=255) gatCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGACCATTAGATTACCCAATAGTACTTGCTATCga < 2:648823/150‑1 (MQ=255) cGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGACCATTAGATTACCCAATAGTACTTGCTATCGAGaa > 1:2440778/1‑150 (MQ=255) cGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGACCATTAGATTACCCAATAGTACTTGCTATCGAGaa > 1:4014780/1‑150 (MQ=255) cGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGACCAGTAGATTACCCAATAGTACTTGCTATCgagac > 1:2440824/1‑149 (MQ=255) gAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGACCATTAGATTACCCAATAGTACTTGCTATCGAGAAt > 1:1063016/1‑150 (MQ=255) aaaCCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGACCATTAGATTACCCACTAGTACTTGCTATCGAGAATAAg > 1:2360409/1‑150 (MQ=255) aaCCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGACCATTAGATTACCCAATAGTACTTGCTATCGAGAATAAgg > 2:3404668/1‑150 (MQ=255) aaCCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGACCATTAGATTACCCAATAGTACTTGCTATCGAGAATAAgg > 2:545542/1‑150 (MQ=255) aaCCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGACCATTAGATTACCCAATAGTACTTGCTATCGAGAATAAgg < 1:3458198/150‑1 (MQ=255) aaCCGAAGCCGTCAGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGACCATTAGATTACCCAATAGTACTTGCTATCGAGAATAAgg > 1:1269382/1‑150 (MQ=255) aaCCGAAGCCGTCAGGCTTCGG‑TTTTTTATGCCCTGCATTCGGTGCAGTGAACCACCAGCAACACCCTCACCTATTTGTCACATGGGACGAATGTTCCAACCCAGGCGGACCATTAGATTACCCAATAGTACTTGCTATCGAGAATAAgg > 1:2873116/1‑150 (MQ=255) aCCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGACCATTAGATTACCCAATAGTACTTGCTATCGAGAATAAGGa < 2:1360972/150‑1 (MQ=255) aCCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGACCATTAGATTACCCAATAGTACTTGCTATCGAGAATAAGGa > 1:442975/1‑150 (MQ=255) ccGAAGCCTGACGGCTTCGGTTTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGACCATTAGATTACCCAATAGTACTTGCTATCGAGAATAAGGa < 2:2820341/150‑1 (MQ=255) cGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGACCATTAGATTACCCAATAGTACTTGCTATCGAGAATAAGGAAg > 1:1756511/1‑150 (MQ=255) gAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGACCATTAGATTACCCAATAGTACTTGCTATCCAGAATAAGGAAGa < 1:3398502/150‑1 (MQ=255) aaGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGACCATTAGATTACCCAATAGTACTTGCTATCGAGAATAAGGAAGAc < 1:2418043/150‑1 (MQ=255) gCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGACCATTAGATTACCCAATAGTACTTGCTATCGAGAATAAGGAAGACGc < 2:2790068/150‑1 (MQ=255) cTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGACCATTAGATTACCCAATAGTACTTGCTATCGAGAATAAGGAAGACGCAt < 1:158821/150‑1 (MQ=255) cTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGACCATTAGATTACCCAATAGTACTTGCTATCGAGAATAAGGAAGACGCAt < 2:4068218/150‑1 (MQ=255) tGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGACCATTAGATTACCCAATAGTACTTGCTATCGAGAATAAGGAAGACGCATg > 1:538557/1‑150 (MQ=255) | GGTATCGTAAGCGGCGAAACCGACGGCATGCAGGCCTTCATGGGTGGCAAGCTGCGGGTTGAAGGCGACATGATGCTGTCGATGAAACTCAGCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGACCATTAGATTACCCAATAGTACTTGCTATCGAGAATAAGGAAGACGCATG > NC_002947/4431903‑4432199 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |