| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,432,051 | G→T | 5.4% | intergenic (+38/‑146) | PP_3924 → / → PP_3925 | hypothetical protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,432,051 | 0 | G | T | 5.4% | 598.8 / 16.4 | 175 | intergenic (+38/‑146) | PP_3924/PP_3925 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (71/94); new base T (6/4); total (77/98) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.39e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 176 total aligned reads displayed.
GGTATCGTAAGCGGCGAAACCGACGGCATGCAGGCCTTCATGGGTGGCAAGCTGCGGGTTGAAGGCGACATGATGCTGTCGATGAAACTCAGCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGACCATTAGATTACCCAATAGTACTTGCTATCGAGAATAAGGAAGACGCATGA > NC_002947/4431903‑4432200 | aaGCGGCGAAACCGACGGCATGCAGGCCTTCATGGGTGGCAAGCTGCGGGTTGAAGGCGACATGATGCTGTCGATGAAACTCAGCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCg < 1:2711402/150‑1 (MQ=255) aGCGGCGAAACCGACGGCATGCAGGCCTTCATGGGTGGCAAGCTGCGGGTTGAAGGCGACATGATGCTGTCGATGAAACTCAGCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCgg < 2:4340343/150‑1 (MQ=255) aGCGGCGAAACCGACGGCATGCAGGCCTTCATGGGTGGCAAGCTGCGGGTTGAAGGCGACATGATGCTGTCGATGAAACTCAGCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCGTCAGGCTTCgg < 1:4115644/150‑1 (MQ=255) cggcgAAACCGACGGCATGCAGGCCTTCATGGGTGGCAAGCTGCGGGTTGAAGGCGACATGATGCTGTCGATGAAACTCAGCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCGTCAGGCTTCGG‑tt < 2:1604896/150‑1 (MQ=255) ggcgAAACCGACGGCATGCAGGCCTTCATGGGTGGCAAGCTGCGGGTTGAAGGCGACATGATGCTGTCGATGAAACTCAGCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑ttt < 2:168742/150‑1 (MQ=255) cgAAACCGACGGCATGCAGGCCTTCATGGGTGGCAAGCTGCGGGTTGAAGGCGACATGATGCTGTCGATGAAACTCAGCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑ttttt < 1:1290094/150‑1 (MQ=255) aaaCCGACGGCATGCAGGCCTTCATGGGTGGCAAGCTGCGGGTTGAAGGCGACATGATGCTGTCGATGAAACTCAGCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑ttttttt > 2:2192803/1‑150 (MQ=255) ccGACGGCATGCAGGCCTTCATGGGTGGCAAGCTGCGGGTTGAAGGCGACATGATGCTGTCGATGAAACTCAGCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGc < 1:3730177/150‑1 (MQ=255) cGACGGCATGCAGGCCTTCATGGGTGGCAAGCTGCGGGTTGAAGGCGACATGATGCTGTCGATGAAACTCAGCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGcc > 1:648847/1‑150 (MQ=255) aCGGCATGCAGGCCTTCATGGGTGGCAAGCTGCGGGTTGAAGGCGACATGATGCTGTCGATGAAACTCAGCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCt < 1:1500921/150‑1 (MQ=255) ggCATGCAGGCCTTCATGGGTGGCAAGCTGCGGGTTGAAGGCGACATGATGCTGTCGATGAAACTCAGCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGc < 2:1271249/150‑1 (MQ=255) aTGCAGGCCTTCATGGGTGGCAAGCTGCGGGTTGAAGGCGACATGATGCTGTCGATGAAACTCAGCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCAtt > 2:607894/1‑150 (MQ=255) gCAGGCCTTCATGGGTGGCAAGCTGCGGGTTGAAGGCGACATGATGCTGTCGATGAAACTCAGCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCg < 2:1354783/150‑1 (MQ=255) ccTTCATGGGTGGCAAGCTGCGGGTTGAAGGCGACATGATGCTGTCGATGAAACTCAGCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCa < 1:3242170/150‑1 (MQ=255) ccTTCATGGGTGGCAAGCTGCGGGTTGAAGGCGACATGATGCTGTCGATGAAACTCAGCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCa < 1:2070185/150‑1 (MQ=255) cTTCATGGGTGGCAAGCTGCGGGTTGAAGGCGACATGATGCTGTCGATGAAACTCAGCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGGTTTTTTTTTGCCCTGCATTCGGTGCa > 1:2820341/1‑150 (MQ=255) ttCATGGGTGGCAAGCTGCGGGTTGAAGGCGACATGATGCTGTCGATGAAACTCAGCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGt < 1:1518356/150‑1 (MQ=255) aTGGGTGGCAAGCTGCGGGTTGAAGGCGACATGATGCTGTCGATGAAACTCAGCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGAt > 2:2281777/1‑150 (MQ=255) gggTGGCAAGCTGCGGGTTGAAGGCGACATGATGCTGTCGATGAAACTCAGCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATcc > 1:2390220/1‑150 (MQ=255) tGGCAAGCTGCGGGTTGAAGGCGACATGATGCTGTCGATGAAACTCAGCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATccacc < 1:3348723/150‑1 (MQ=255) gCAAGCTGCGGGTTGAAGGCGACATGATGCTGTCGATGAAACTCAGCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAg < 1:3055679/150‑1 (MQ=255) cAAGCTGCGGGTTGAAGGCGACATGATGCTGTCGATGAAACTCAGCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGc < 1:226943/150‑1 (MQ=255) ggTTGAAGGCGACATGATGCTGTCGATGAAACTCAGCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTc < 1:36864/150‑1 (MQ=255) aaGGCGACATGATGCTGTCGATGAAACTCAGCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTa < 1:107804/150‑1 (MQ=255) ggCGACATGATGCTGTCGATGAAACTCAGCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑‑TTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTAttt < 2:4083290/150‑1 (MQ=255) gCGACATGATGCTGTCGATGAAACTCAGCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTTCCCGGCATTGGGTGCAGTGATCCACCAGCAACACCCACAACGAttt > 1:1613077/1‑150 (MQ=255) gCGACATGATGCTGTCGATGAAACTCAGCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTAttt < 1:3582912/150‑1 (MQ=255) gCGACATGATGCTGTCGATGAAACTCAGCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTAttt < 2:4509002/150‑1 (MQ=255) gCGACATGATGCTGTCGATGAAACTCAGCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTAttt < 2:4329292/150‑1 (MQ=255) cGACATGATGCTGTCGATGAAACTCAGCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTg > 1:632730/1‑150 (MQ=255) gACATGATGCTGTCGATGAAACTCAGCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTgg > 2:61930/1‑150 (MQ=255) gatgCTGTCGATGAAACTCAGCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACAt > 2:314894/1‑150 (MQ=255) tgCTGTCGATGAAACTCAGCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATgg < 1:1654926/150‑1 (MQ=255) tgCTGTCGATGAAACTCAGCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATgg > 1:2758425/1‑150 (MQ=255) cTGTCGATGAAACTCAGCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGa < 2:3238165/150‑1 (MQ=255) cTGTCGATGAAACTCAGCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGa < 1:444627/150‑1 (MQ=255) tGTCGATGAAACTCAGCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGAc > 2:3063397/1‑150 (MQ=255) gATGAAACTCAGCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGAtt > 2:2376333/1‑150 (MQ=255) aTGAAACTCAGCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCACACCGATTTGGCACATGGGACGATTg > 1:120494/1‑150 (MQ=255) tGAAACTCAGCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGt > 2:4028534/1‑150 (MQ=255) gAAACTCAGCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGtt < 1:1174634/150‑1 (MQ=255) aaaCTCAGCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTc > 2:2692680/1‑150 (MQ=255) aaCTCAGCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTcc < 2:850192/150‑1 (MQ=255) tCAGCGGGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTATTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAAc < 1:4240588/150‑1 (MQ=255) tCAGCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAAc > 1:2829189/1‑150 (MQ=255) gCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCt < 1:1145853/150‑1 (MQ=255) gCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCt < 1:984929/150‑1 (MQ=255) gCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCAGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCt > 2:1374125/1‑150 (MQ=255) gTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGAc < 2:3719790/150‑1 (MQ=255) ttCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGAcc < 1:1701802/150‑1 (MQ=255) ttCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGAcc > 2:4150738/1‑150 (MQ=255) ttCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGAcc > 2:4404286/1‑150 (MQ=255) ttCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGAcc > 1:3919328/1‑150 (MQ=255) cccGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGACCAt < 2:4005263/150‑1 (MQ=255) ccGTCCTGAGGGCTGGGAATACCGGTTGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGACCAtt > 2:1462193/1‑150 (MQ=255) ccGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGACCAtt < 1:1723242/150‑1 (MQ=255) ccGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGACCAtt > 1:317825/1‑150 (MQ=255) cGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGACCATTa < 2:1038269/150‑1 (MQ=255) cGTCCTGAGGCCTGGGACTACCGGACGCTCGAACCACCGCAGCCTGCCGGCTTCGG‑TTTTTTTGGCCCGGCATTCGGTGCAGTGATCCACCAGCAACACCCTCCCCTAGTTGGCACAGGGGACGATTGTGCCAACCCTGGCGGACCATTa < 2:4030764/150‑1 (MQ=255) tCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGACCATTAGa < 2:3947622/150‑1 (MQ=255) tCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGACCATTAGa < 2:2028600/150‑1 (MQ=255) tCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGACCATTAGa < 2:1830119/150‑1 (MQ=255) tCCAGAGGGCTGGGAATACCGGATGATCGAAAAACCCAAGCCTGACGGCTACGG‑ATATTTTTGCCCTGCATTCGGTGCAGTGATCCACCACCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGACCATTAGa < 2:3404979/150‑1 (MQ=255) aGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGACCATTAGATTAcc < 1:3888958/150‑1 (MQ=255) aGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGACCATTAGATTAcc < 1:4440237/150‑1 (MQ=255) ggCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGC‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGACCATTAGATTACCCa > 2:697464/1‑150 (MQ=255) gCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGACCATTAGATTACCCaa < 1:61930/150‑1 (MQ=255) tGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGACCATTAGATTACCCAATa < 1:1921078/150‑1 (MQ=255) tGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGACCATTAGATTACCCAATa > 1:3766598/1‑150 (MQ=255) ggAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTc < 2:1131402/89‑1 (MQ=255) ggAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTc > 1:1131402/1‑89 (MQ=255) aTACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGACCATTAGATTACCCAATAGTACt < 1:3456312/150‑1 (MQ=255) ccGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGACCATTAGATTACCCAATAGTACTTGc > 1:2504407/1‑150 (MQ=255) ccGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGACCATTAGATTACCCAATAGTACTTGc > 2:119926/1‑150 (MQ=255) cGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGACCATTAGATTACCCAATAGTACTTGCt > 1:1254426/1‑150 (MQ=255) ggATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGACCATTAGATTACCCAATAGTACTTGCTa > 1:2528898/1‑150 (MQ=255) atgatCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGACCATTAGATTACCCAATAGTACTTGCTATc < 1:3628724/150‑1 (MQ=255) atgatCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGACCATTAGATTACCCAATAGTACTTGCTATc < 2:1266541/150‑1 (MQ=255) gatCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGACCATTAGATTACCCAATAGTACTTGCTATCga < 1:592333/150‑1 (MQ=255) gatCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGACCATTAGATTACCCAATAGTACTTGCTATCga < 1:1461685/150‑1 (MQ=255) gatCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGACCATTAGATTACCCAATAGTACTTGCTATCga < 2:648847/150‑1 (MQ=255) gatCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGACCATTAGATTACCCAATAGTACTTGCTATCga < 2:1461770/150‑1 (MQ=255) cGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGACCATTAGATTACCCAATAGTACTTGCTATCGAGaa > 1:2440778/1‑150 (MQ=255) cGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGACCATTAGATTACCCAATAGTACTTGCTATCGAGaa > 1:4014780/1‑150 (MQ=255) gAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGACCATTAGATTACCCAATAGTACTTGCTATCGAGAAt > 1:1063016/1‑150 (MQ=255) aaaaaCCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGACCATTAGATTACCCAATAGTACTTGCTATCGAGAATa > 2:3378442/1‑150 (MQ=255) aaaaCCGAAGCCGTCAGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGACCATTAGATTACCCAATAGTACTTGCTATCGAGAATaa > 1:432541/1‑150 (MQ=255) aaaCCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGACCATTAGATTACCCACTAGTACTTGCTATCGAGAATAAg > 1:2360409/1‑150 (MQ=255) aaCCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGACCATTAGATTACCCAATAGTACTTGCTATCGAGAATAAgg > 2:545542/1‑150 (MQ=255) aaCCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGACCATTAGATTACCCAATAGTACTTGCTATCGAGAATAAgg < 1:3458198/150‑1 (MQ=255) aaCCGAAGCCGTCAGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGACCATTAGATTACCCAATAGTACTTGCTATCGAGAATAAgg > 1:1269382/1‑150 (MQ=255) aaCCGAAGCCGTCAGGCTTCGG‑TTTTTTATGCCCTGCATTCGGTGCAGTGAACCACCAGCAACACCCTCACCTATTTGTCACATGGGACGAATGTTCCAACCCAGGCGGACCATTAGATTACCCAATAGTACTTGCTATCGAGAATAAgg > 1:2873116/1‑150 (MQ=255) cGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGACCATTAGATTACCCAATAGTACTTGCTATCGAGAATAAGGAAg > 1:1756511/1‑150 (MQ=255) gAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGACCATTAGATTACCCAATAGTACTTGCTATCGAGAATAAGGAAGa > 1:952311/1‑150 (MQ=255) gAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGACCATTAGATTACCCAATAGTACTTGCTATCCAGAATAAGGAAGa < 1:3398502/150‑1 (MQ=255) aaGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGACCATTAGATTACCCAATAGTACTTGCTATCGAGAATAAGGAAGAc < 1:2418043/150‑1 (MQ=255) gCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGACCATTAGATTACCCAATAGTACTTGCTATCGAGAATAAGGAAGACGc < 2:2790068/150‑1 (MQ=255) cTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGACCATTAGATTACCCAATAGTACTTGCTATCGAGAATAAGGAAGACGCAt < 1:158821/150‑1 (MQ=255) cTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGACCATTAGATTACCCAATAGTACTTGCTATCGAGAATAAGGAAGACGCAt < 2:4068218/150‑1 (MQ=255) tGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGACCATTAGATTACCCAATAGTACTTGCTATCGAGAATAAGGAAGACGCATg > 1:538557/1‑150 (MQ=255) | GGTATCGTAAGCGGCGAAACCGACGGCATGCAGGCCTTCATGGGTGGCAAGCTGCGGGTTGAAGGCGACATGATGCTGTCGATGAAACTCAGCGAGCTGTTCCCGTCCTGAGGGCTGGGAATACCGGATGATCGAAAAACCGAAGCCTGACGGCTTCGG‑TTTTTTTTGCCCTGCATTCGGTGCAGTGATCCACCAGCAACACCCTCACCTATTTGGCACATGGGACGATTGTTCCAACCCTGGCGGACCATTAGATTACCCAATAGTACTTGCTATCGAGAATAAGGAAGACGCATGA > NC_002947/4431903‑4432200 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |