Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 90,414 | C→T | 6.4% | intergenic (+89/+33) | PP_0079 → / ← PP_0080 | transcriptional regulator/hypothetical protein |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 90,414 | 0 | C | T | 6.4% | 635.1 / 22.6 | 203 | intergenic (+89/+33) | PP_0079/PP_0080 | transcriptional regulator/hypothetical protein |
Reads supporting (aligned to +/- strand): ref base C (92/98); new base T (10/3); total (102/101) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 8.20e-02 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.30e-01 |
Only 100 of 208 total aligned reads displayed.
GCGGCGTGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCA‑TGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAGCATGTCCACCATCCCCGCTGCGATCCTGGACAAGCGCCGCAACGGCTCAGCCAGCCCAGGCTCCAGCGT > NC_002947/90265‑90563 | gcggcgTGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCA‑TGTGGGAGCGGCCTTGc < 2:3437210/150‑1 (MQ=255) gcgTGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCA‑TGTGGGAGCGGCCTTGCGTc < 2:1553547/150‑1 (MQ=255) ggCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGTAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCA‑TGTGGGAGCGGCCTTGCGTCGCGATg < 2:1010737/150‑1 (MQ=255) cGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCA‑TGTGGGAGCGGCCTTGCGTCGCGATggg < 1:2279996/150‑1 (MQ=255) ttGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAACGCCCCTCCCACACTGGCACAGCACAACCCCGCCCA‑AGTGGGAGCGGCCGTGCGTAGCCAAGGGCt > 2:2049420/1‑150 (MQ=25) tGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCA‑TGTGGGAGCGGCCTTGCGTCGCGATGGGCTg > 2:2849199/1‑150 (MQ=255) gATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCA‑TGTGGGAGCGGCCTTGCGTCGCGATGGGCTgc < 1:1400633/150‑1 (MQ=255) tCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTTGCACAGCACACCCCGGCCCA‑AGTTGGAGCGGCCATGCGTCGCGATGGGCTgcgc > 1:3079938/1‑150 (MQ=38) agctggacttgcaccggagcgagcacctgaacttcgtggtctagattgccggggctgctgcgcagcccatcgcgacaCAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCA‑TGTGGGAGTGGCCTTGCGTCGCGATGGGCTgcgc > 1:3957732‑M1/78‑150 (MQ=255) cgtgCGGTTTGTGGAGTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCT‑TGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCgca < 2:161636/147‑1 (MQ=255) aGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCA‑TGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCgcagc < 1:2668296/150‑1 (MQ=255) aGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCA‑TGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCgcagc > 2:43712/1‑150 (MQ=255) gacttgcaccggagcgagcacctgaacttcgtggtctagattgccggggccgctttgcggcccatcgcgacaCAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCA‑TGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGcagcag > 1:1840419‑M1/73‑150 (MQ=255) gacttgcaccggagcgagcacctgaacttcgtggtctagattgccggggccgctttgcggcccatcgcgacaCAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCA‑TGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGcagcag > 1:6128‑M1/73‑150 (MQ=255) tttGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCACCCACAGTGGCACTGCACACGCCGGCCCA‑TGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGccc > 1:3950054/1‑150 (MQ=255) ttGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACGGCACACGCCGGCCCA‑TGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGcccc < 1:3686283/150‑1 (MQ=255) tgtgGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTGTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCA‑TGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCg < 2:4215394/150‑1 (MQ=255) caccggagcgagcacctgaacttcgtggtctagattgctggggccgctttgcggcccatcgcgacaCAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCA‑TGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCgg > 1:3869139‑M1/67‑150 (MQ=255) caccggagcgagcacctgaacttcgtggtctagattgctggggccgctttgcggcccatcgcgacaCAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCA‑TGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCgg > 2:2234540‑M1/67‑150 (MQ=255) tgGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCA‑TGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGcccctcg < 1:4034875/150‑4 (MQ=255) tgGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCA‑TGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGc < 1:2031670/150‑1 (MQ=255) tgGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCA‑TGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGc < 1:1684747/150‑1 (MQ=255) tgGATGGGTTGGAGCCTGAGCGCCGCCTTTGCGATTTGGGGGCCGGTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCA‑TGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGc < 1:127702/150‑1 (MQ=38) ggttggAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCA‑TGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTa < 1:1204605/150‑1 (MQ=255) gttggAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCTCCGCAAAAGTCCCCACCCAAATTGGCACAGCACAAGCCGGCCCA‑GGTGGGGGCCGCCTTTCGGCGCGGTGGGCGGCCCATCAGCCCCCGCaaacaat > 1:3389515/1‑145 (MQ=19) ttggAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCA‑TGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGa > 2:3357364/1‑150 (MQ=255) ttggAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCA‑TGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGa < 1:2337095/150‑1 (MQ=255) ttggAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCA‑TGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGa > 2:1787618/1‑150 (MQ=255) tggAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCA‑TGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGAc < 2:1732447/150‑1 (MQ=255) ggAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCA‑TGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGAcc > 1:1008483/1‑150 (MQ=255) aGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCA‑TGTGGGAGCGGCCGTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCAc > 2:120715/1‑150 (MQ=255) aGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACAGCACACGCCGGCCCA‑TGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGAacac > 1:358588/1‑150 (MQ=255) gCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTTGCACTGCACACCCCGGCCCA‑TGTGGGAGCGGCCGTGCGTCGCGATGGGCGGCGCAGCAGCCCCCGCCATCTAGACCAcc > 1:253742/1‑149 (MQ=38) cAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCA‑TGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGa > 2:8964/1‑150 (MQ=255) gAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCA‑TGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGt > 2:2739533/1‑150 (MQ=255) gcAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCA‑TGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAg < 2:2874063/150‑1 (MQ=255) gcAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCA‑TGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAg < 1:307402/150‑1 (MQ=255) cAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCA‑TGTGGGAGCGGCTTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAgg < 1:4096520/150‑1 (MQ=255) cAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCA‑TGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAgg > 2:2526846/1‑150 (MQ=255) aGCCTTTGAGATTTTGGGGACGCTTTGCGGCCCATAGCGACAAAAGGCCCCTCCCACAGTGGCACTTCACAACCCCACCCA‑AGGGGGGGCCGCCATGCGTCGCGATGGGCTGCGCAGCACCCCCCGCAATCTATACAACGAAggtaaagt > 1:423845/1‑143 (MQ=19) gCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCA‑TGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTg < 1:1724479/150‑1 (MQ=255) ccTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAATGCCGCGCCCACCGTGGGACTGCACACGCCGGCCCC‑AGTGGGGGCGGCCGTGCCTCGCCATGGGGGGCGCCGCCGCCCCGGCCAACAAGACCACGAAGTTCAGGTgc > 1:550563/1‑150 (MQ=21) tttGAGATTTTGGGGCCGCTTTGCGGCCCATCCCGACACAAGGCCGCTCCCACAGTGGCACAGCGCACCCCGGCCCA‑TGTGGGAGCGGCCGTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAAACTAGACCACCAAGTTCAGGTgcac > 1:3927406/1‑148 (MQ=38) gagtttGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACCGTGGCACTGCACACGCCGGCCCA‑TGTGGGAGCGGCCTTGCGTCGCGAGGGGCTGCGCAGCAGCCCCGGCACTCGAGACCCCGAAGTTCAGGTGCTCGCTcc > 2:1222427/4‑150 (MQ=38) gaTTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCA‑TGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTcc > 2:741276/1‑150 (MQ=255) ttGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCA‑TGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTg > 2:4026732/1‑150 (MQ=255) gggCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCA‑TGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCaa < 1:614665/150‑1 (MQ=255) ggCCGCTTGGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCA‑TGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAg < 1:803322/150‑1 (MQ=255) gCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCA‑TGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGt < 1:2399542/150‑1 (MQ=255) ccGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTTGCACAGCACACGCCGGCCCA‑TGTGGGAGCGGCCATGCGTCGCGATGGGCTGCCCAGCAGCCCCGGCAAACTATACCACCAAATTAAGGTGCTCGCTACGGTGCAAGtc > 1:2507202/1‑150 (MQ=38) ccGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCA‑TGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGtc > 2:169041/1‑150 (MQ=255) ctgctgcgcagcccatcgcgacgcaaggccgctcccacatgggccggcgtgtgcagtgccactgtgggagcggccttgTGTCGCGATGGGCCGCAAAGCGGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGtc > 2:1813514‑M2/79‑150 (MQ=255) tGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCA‑TGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGtccagctc < 1:2568164/150‑1 (MQ=255) tGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCA‑TGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGtccagctc < 1:2568121/150‑1 (MQ=255) gCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCA‑TGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGtccagctcc < 1:3242060/150‑1 (MQ=255) cGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCA‑TGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGtccagctcca < 2:4180322/150‑1 (MQ=255) ggCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCA‑TGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGtccagctccag < 1:1088540/150‑1 (MQ=255) gCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCA‑TGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGtccagctccagc < 2:3163213/150‑1 (MQ=255) ccATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCA‑TGTGGGAGCGGCCTTGCGGCCCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAGCag > 2:1582982/1‑149 (MQ=255) catcgcgacgCAAGGCCGCTCCCACATGGGC‑CGGCGTGTGCAGTGCCACTGTGGGAGCGGCCTTGTGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAGCATg < 2:3298896‑M1/140‑1 (MQ=255) tCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCA‑TGTGGGAGCGGCCATGCGTCGCGATGGGCTGCGCAGCAGCCCCCGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAGCATGTc > 1:3514641/1‑150 (MQ=255) CAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCA‑TGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAGCATGTCCACCATcc > 2:3585599‑M1/1‑150 (MQ=255) CAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCA‑TGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAGCATGTCCACCATcc < 1:2057952‑M1/150‑1 (MQ=255) CAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCA‑TGTGGGAGCGGCATTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAGCATGTCCACCATcc > 2:1308485‑M1/1‑150 (MQ=255) GCCGCTCCCACAGTGGCACTGCACACGCCGGCCCA‑TGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAGCATGTCCACCATCCCCGc < 1:723538‑M1/150‑1 (MQ=255) cgctcccacatgggccggcgtgtgcagtgccactgtgggagcagccttgCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAGCATGTCCACCATCCCCGCTg > 1:2620871‑M2/50‑150 (MQ=255) GCTCCCACAGTGGCACTGCACACGCCGGCCCA‑TGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAGCATGTCCACCATCCCCGCTGc > 2:616843‑M1/1‑150 (MQ=255) GCTCCCACAGTGGCACTGCACACGCCGGCCCA‑TGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAGCATGTCCACCATCCCCGCTGc < 1:2171711‑M1/150‑1 (MQ=255) GCTCCCACAGTGGCACTGCACACGCCGGCCCA‑TGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAGCATGTCCACCATCCCCGCTGc < 1:2943508‑M1/150‑1 (MQ=255) GCTCCCACAGTGGCACTGCACACGCCGGCCCA‑TGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAGCATGTCCACCATCCCCGCTGc < 2:404280‑M1/150‑1 (MQ=255) ctcccacatgggccggcgtgtgcagtgccactgtgggagcggccttgCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAGCATGTCCACCATCCCCGCTGCg > 1:4262101‑M2/48‑150 (MQ=255) TCCCACAGTGGCACTGCACACGCCGGCCCA‑TGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAGCATGTCCACCATCCCCGCTGCGa < 2:4381982‑M1/150‑1 (MQ=255) cccacatgggccggcgtgtgcagtgccactgtgggagcggccttgTGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAGCATGTCCACCATCCCCGCTGCGAt > 2:4501057‑M2/46‑150 (MQ=255) CCACAGTGGCACTGCACACGCCGGCCCA‑TGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAGCATGTCCACCATCCCCGCTGCGATc < 2:539059‑M1/150‑1 (MQ=255) AGTGGCACTGCACACGCCGGCCCA‑TGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAGCATGTCCACCATCCCCGCTGCGATCCTgg > 1:3808260‑M1/1‑150 (MQ=255) AGTGGAACTGCACACGCCGGCCCA‑TGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAGCATGTCCACCATCCCCGCTGCGATCCTgg < 2:2403785‑M1/150‑1 (MQ=255) gTGGCACTGCACACGCCGGCCCA‑TGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAGTATGTCCACCATCCCCGCTGCGATCCTGGa < 1:2583524/150‑1 (MQ=255) atgggccggcgtgtgcagtgccactgtgggagcggccttgCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAGCATGTCCACCATCCCCGCTGCGATCCTgg > 2:76096‑M2/41‑150 (MQ=255) gCACTGCACACGCCGGCCCA‑TGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAGCATGTCCACCATCCCCGCTGCGATCCTGGACaa > 2:2783855/1‑150 (MQ=255) cACTGCACACGCCGGCCCA‑TGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAGCATGTCCACCATCCCCGCTGCGATCCTGGACAAg > 2:3931587/1‑150 (MQ=255) aCTGCACACGCCGGCCCA‑TGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAGCATGTCCACCATCCCCGCTGCGATCCTGGACAAgc > 2:3661475/1‑150 (MQ=255) gCCGGCCCA‑TGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAGCATGTCCACCATCCCCGCTGCGATCCTGGACAAGCGCCGCAACg < 2:446968/150‑1 (MQ=255) gCCGGCCCA‑TGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAGCATGTCCACCATCCCCGCTGCGATCCTGGACAAGCGCCGCAACg > 2:712578/1‑150 (MQ=255) cGGCCCA‑TGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAGCATGTCCACCATCCCCGCTGCGATCCTGGACAAGCGCCGCAACGGc > 2:485508/1‑150 (MQ=255) cccA‑TGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAGCATGTCCACCATCCCCGCTGCGATCCTGGACAAGCGCCGCAACGGCTca < 1:2417654/150‑1 (MQ=255) cccA‑TGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAGCATGTCCACCATCCCCGCTGCGATCCTGGACAAGCGCCGCAACGGCTca < 2:339309/150‑1 (MQ=255) cA‑TGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAGCATGTCCACCATCCCCGCTGCGATCCTGGACAAGCGCCGCAACGGCTcagc < 2:1063193/150‑1 (MQ=255) tgtgggagcggccttgCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAGCATGTCCACCATCCCCGCTGCGATCCTGGACAAGCGCCGCAACGGCTcagcca < 2:4246027‑M2/134‑1 (MQ=255) tgtgggagcggccttgCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAGCATGTCCACCATCCCCGCTGCGATCCTGGACAAGCGCCGCAACGGCTcagcca < 2:1245692‑M2/134‑1 (MQ=255) tgggagcggccttgCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAGCATGTCCACCATCCCCGCTGCGATCCTGGACAAGCGCCGCAACGGCTcagccagc < 1:4226361‑M2/136‑1 (MQ=255) tgggagcggccttgCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAGCATGTCCACCATCCCCGCTGCGATCCTGGACAAGCGCCGCAACGGCTcagccagc < 1:43712‑M2/136‑1 (MQ=255) gggagcggccttgCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAGCATGTCCACCATCCCCGCTGCGATCCTGGACAAGCGCCGCAACGGCTCagccagcc > 1:4149647‑M2/14‑150 (MQ=255) gggagcggccttgCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAGCATGTCCACCATCCCCGCTGCGATCCTGGACAAGCGCCGCAACGGCTCagccagcc > 1:4320821‑M2/14‑150 (MQ=255) gggagcggccttgCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAGCATGTCCACCATCCCCGCTGCGATCCTGGACAAGCGCCGCAACGGCTCagccagcc > 1:4495138‑M2/14‑150 (MQ=255) gggagcggccttgCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAGCATGTCCACCATCCCCGCTGCGATCCTGGACAAGCGCCGCAACGGCTCagccagcc > 1:158682‑M2/14‑150 (MQ=255) agcggccttgCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAGCATGTCCACCATCCCCGCTGCGATCCTGGACAAGCGCCGCAACGGCTCAGCCAGCCCAg > 1:707320‑M2/11‑150 (MQ=255) ggccttgCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAGCATGTCCACCATCCCCGCTGCGATCCTGGACAAGCGCCGCAACGGCTCAGCCAGCCCAGGCt > 2:4331302‑M2/8‑150 (MQ=255) cGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAGCATGTCCACCATCCCCGCTGCGATCCTGGACAAGCGCCGCAACGGCTCAGCCAGCCCAGGCTCCAGCGt < 1:2849199/150‑1 (MQ=255) cGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAGCATGTCCACCATCCCCGCTGCGATCCTGGACAAGCGCCGCAACGGCTCAGCCAGCCCAGGCTCCAGCGt < 2:2898704/150‑1 (MQ=255) cGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAGCATGTCCACCATCCCCGCTGCGATCCTGGACAAGCGCCGCAACGGCTCAGCCAGCCCAGGCTCCAGCGt < 1:307838/150‑1 (MQ=255) | GCGGCGTGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCA‑TGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAGCATGTCCACCATCCCCGCTGCGATCCTGGACAAGCGCCGCAACGGCTCAGCCAGCCCAGGCTCCAGCGT > NC_002947/90265‑90563 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |