| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,613,037 | C→T | 5.5% | intergenic (+31/‑2076) | hcpC‑II → / → PP_4084 | hemolysin‑coregulated protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,613,037 | 0 | C | T | 5.5% | 560.8 / 15.3 | 182 | intergenic (+31/‑2076) | hcpC‑II/PP_4084 | hemolysin‑coregulated protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (80/91); new base T (7/3); total (87/95) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.99e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.94e-01 | |||||||||||
Only 100 of 201 total aligned reads displayed.
AAGACAATGAAAACTACACCCAGCTGGTTGAAGTATCGCTGGCGTATCGAAAGATCACGTGGGCTCACGATGTAGCCAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTGAATTCGAAGTGGTGTCGTTCGAACTCCGCGAGGGCATCAGCGCACCCTTT > NC_002947/4612888‑4613185 | aaGACAATGAAAACTACACCCAGCTGGTTGAAGTATCGCTGGCGTATCGAAAGATCACGTGGGCTCACGATGTAGCCAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATgccc > 2:1706937/1‑150 (MQ=37) aGACAATGAAAACTACACCCAGCTGGTTGAAGTATCGCTGGCGTATCGAAAGATCACGTGGGCTCACGATGTAGCCAATACCGAAGGCTCTGACGACTGGCGCGCACCCACCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATgcccg > 1:22719/1‑150 (MQ=37) gACAATGAAAACTACACCCAGCTGGTTGAAGTATCGCTGGCGTATCGAAAGATCACGTGGGCTCACGATGTAGCCAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATgcccgc > 2:1700337/1‑150 (MQ=37) aCAATGAAAACTACACCCAGCTGGTTGAAGTATCGCTGGCGTATCGAAAGATCACGTGGGCTCACGATGTAGCCAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATgcccgcc > 1:2610964/1‑150 (MQ=37) aTGAAAACTACACCCAGCTGGTTGAAGTATCGCTGGCGTATCGAAAGATCACGTGGGCTCACGATGTAGCCAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCGGGCATGGCCTGCCCgg < 1:713660/150‑1 (MQ=11) aTGAAAACTACACCCAGCTGGTTGAAGTATCGCTGGCGTATCGAAAGATCACGTGGGCTCACGATGTAGCCAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCgg > 2:4276992/1‑150 (MQ=37) tGAAAACTACACCCAGCTGGTTGAAGTATCGCTGGCGTATCGAAAGATCACGTGGGCTCACGATGTAGCCAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCGGGCATGGCCTGCCCggg < 2:1731874/150‑1 (MQ=11) tGAAAACTACACCCAGCTGGTTGAAGTATCGCTGGCGTATCGAAAGATCACGTGGGCTCACGATGTAGCCAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCggg > 1:3194844/1‑150 (MQ=37) tGAAAACTACACCCAGCTGGTTGAAGTATCGCTGGCGTATCGAAAGATCACGTGGGCTCACGATGTAGCCAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCggg > 1:2421912/1‑150 (MQ=37) gAAAACTACACCCAGCTGGTTGAAGTATCGCTGGCGTATCGAAAGATCACGTGGGCTCACGATGTAGCCAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGc > 1:3812917/1‑150 (MQ=37) gAAAACTACACCCAGCTGGTTGAAGTATCGCTGGCGTATCGAAAGATCACGTGGGCTCACGATGTAGCCAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGc > 2:720361/1‑150 (MQ=37) aaatCTACACCCAGCTGGTTGAAGTATCGCTGGCGTATCGAAAGATCACGTGGGCTCACGATGTAGCCAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCt > 2:1070312/1‑150 (MQ=37) aaaaCTACACCCAGCTGGTTGAAGTATCGCTGGCGTATCGAAAGATCACGTGGGCTCACGATGTAGCCAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCt > 2:1451356/1‑150 (MQ=37) cTACACCCAGCTGGTTGAAGTATCGCTGGCGTATCGAAAGATCACGTGGGCTCACGATGTAGCCAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTtgt < 2:3004713/150‑1 (MQ=37) tACACCCAGCTGGTTGAAGTATCGCTGGCGTATCGAAAGATCACGTGGGCTCACGATGTAGCCAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTtgtg < 1:1832510/150‑1 (MQ=37) acccccAGCGGGGTGAAGTATCGCTGGCGTATCGAAAGATCACGTGGGCTCACGATGTAGCCAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTgtgt < 2:2732913/147‑1 (MQ=255) cccAGCTGGTTGAAGTATCGCTGGCGTATCGAAAGATCACGTGGGCTCACGATGTAGCCAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGa < 1:4472544/150‑1 (MQ=37) cccAGCTGGTTGAAGTATCGCTGGCGTATCGAAAGATCACGTGGGCTCACGATGTAGCCAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGa < 1:4228275/150‑1 (MQ=37) ccAGCTGGTTGAAGTATCGCTGGCGTATCGAAAGATCACGTGGGCTCACGATGTAGCCAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGAt < 1:73424/150‑1 (MQ=37) ccAGCTGGTTGAAGTATCGCTGGCGTATCGAAAGATCACGTGGGCTCACGATGTAGCCAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGAt < 2:3995671/150‑1 (MQ=37) ccAGCTGGTTGAAGTATCGCTGGCGTATCGAAAGATCACGTGGGCTCACGATGTAGCCAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGAt > 1:4294435/1‑150 (MQ=37) cAGCTGGTTGAAGTATCGCTGGCGTATCGAAAGATCACGTGGGCTCACGATGTAGCCAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGAtt > 2:4212204/1‑150 (MQ=37) ttGAAGTATCGCTGGCGTATCGAAAGATCACGTGGGCTCACGATGTAGCCAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGAcgg > 1:2812154/1‑150 (MQ=34) tGAAGTATCGCTGGCGTATCGAAAGATCACGTGGGCTCACGATGTAGCCAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGAcggc > 2:3448822/1‑150 (MQ=34) cGCTGGCGTATCGAAAGATCACGTGGGCTCACGATGTAGCCAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAgg < 1:2790780/150‑1 (MQ=34) tGGCGTATCGAAAGATCACGTGGGCTCACGATGTAGCCAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATc < 1:3463148/150‑1 (MQ=34) gCGTATCGAAAGATCACGTGGGCTCACGATGTAGCCAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTGTGTGTTGATTCAGACGGCGGACAAGGATCtt > 1:1750745/1‑150 (MQ=21) tATCGAAAGATCACGTGGGCTCACGATGTAGCCAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTa < 1:3318681/150‑1 (MQ=34) cGAAAGATCACGTGGGCTCACGATGTAGCCAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGc > 1:2840158/1‑150 (MQ=34) aaaGATCACGTGGGCTCACGATGTAGCCAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGcccgcccg < 2:3580192/106‑1 (MQ=35) aaaGATCACGTGGGCTCACGATGTAGCCAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGcccgcccg > 1:3580192/1‑106 (MQ=35) aaaGATCACGTGGGCTCACGATGTAGCCAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCt < 1:3154499/150‑1 (MQ=34) aaaGATCACGTGGGCTCACGATGTAGCCAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCt > 1:4377507/1‑150 (MQ=34) aaGATCACGTGGGCTCACGTTGTAGCCAATACCGAAGGCTCTGTCGTCTGGCGCGCACCCGCCGCCTGCCCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTa < 1:252795/150‑1 (MQ=255) gATCACGTGGGCTCACGATGTAGCCAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGc < 1:3702317/150‑1 (MQ=34) aTCACGTGGGCTCACGATGTAGCCAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGcc > 2:540037/1‑150 (MQ=34) aTCACGTGGGCTCACGATGTAGCCAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGcc > 2:4087245/1‑150 (MQ=34) tCACGTGGGCTCACGATGTAGCCAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCa > 2:1156070/1‑150 (MQ=34) gTGGGCTCACGATGTAGCCAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCt > 1:2329867/1‑150 (MQ=34) ggCTCACGATGTAGCCAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGAt < 1:798518/150‑1 (MQ=34) gCTCACGATGTAGCCAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGAtt < 1:2338979/150‑1 (MQ=34) tCACGATGTAGCCAATACCGCAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGAGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTg < 2:371356/150‑1 (MQ=21) tCACGATGTAGCCAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTg > 2:2294275/1‑150 (MQ=34) tCACGATGTAGCCAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTg > 2:4478626/1‑150 (MQ=34) tCACGATGTAGCCAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTg > 1:2730230/1‑150 (MQ=34) cACGATGTAGCCAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTgc < 2:4405062/150‑1 (MQ=34) cGATGTAGCCACTACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAAGGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTgcgc < 2:2226689/150‑1 (MQ=21) cGATGTAGCCAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTgcgc > 2:3383444/1‑150 (MQ=34) gATGTAGCCAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCt > 2:3250061/1‑150 (MQ=34) tAGCCAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAg > 2:742021/1‑150 (MQ=34) ccAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCtt > 2:2690808/1‑150 (MQ=34) cAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCttt < 1:1174680/150‑1 (MQ=34) cAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCttt > 2:1012590/1‑150 (MQ=34) aaTACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTg < 1:4063087/150‑1 (MQ=34) aaTACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTg < 1:1458816/150‑1 (MQ=34) aTACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGa < 2:1738311/150‑1 (MQ=33) aCCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAgg < 1:3870392/150‑1 (MQ=32) cGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCa > 2:4356810/1‑150 (MQ=32) gCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGt < 1:4332331/150‑1 (MQ=32) gCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGt < 1:2313264/150‑1 (MQ=32) tctGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTg < 2:3399549/150‑1 (MQ=32) tctGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTg < 2:3338074/150‑1 (MQ=32) tctGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTg > 2:3056868/1‑150 (MQ=32) tctGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTg < 1:16691/150‑1 (MQ=32) tctGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTGTGAGGCACTCGTTg > 1:1529471/1‑150 (MQ=17) tctGACGACTGGAGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGACATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTg > 1:2654745/1‑150 (MQ=17) tGACGACTGGCGCGTACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGc > 2:4159050/1‑150 (MQ=17) acTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGc < 1:1040950/150‑1 (MQ=32) tGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCttt > 2:1945094/1‑94 (MQ=33) tGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCttt < 1:1945094/94‑1 (MQ=33) gcgcgcACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTGaa < 1:1137114/150‑1 (MQ=33) gcgcgcACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTGaa < 2:2868622/150‑1 (MQ=33) cgcACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTGAATTc < 2:2648381/150‑1 (MQ=34) cgcACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTGAATTc < 1:954578/150‑1 (MQ=34) gcACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTGAATTCg > 1:4142536/1‑150 (MQ=34) gcACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTGAATTCg < 2:1783880/150‑1 (MQ=34) aCCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTGAATTCGaa > 1:543751/1‑150 (MQ=34) aCCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTGAATTCGaa < 2:4445705/150‑1 (MQ=34) aCCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTGAATTCGaa < 1:764536/150‑1 (MQ=34) ccgccgCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTGAATTCGAAgt > 1:3251392/1‑150 (MQ=34) cTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTGAATTCGAAGTGGTGTCg > 2:3918537/1‑150 (MQ=34) gACCCGTGCAAATGCCCCGGGCAGGCCATGCCCACCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATTCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTGAATTCGAAGTGGTGTCGtt < 1:1706937/150‑1 (MQ=21) cGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTGAATTCGAAGTGGTGTCGTTCGaa < 1:2501126/150‑1 (MQ=32) gCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTGAATTCGAAGTGGTGTCGTTCGAACTc > 1:238387/1‑150 (MQ=32) cAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGCGTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTGAATTCGAAGTGGTGTCGGTCGAACTcg > 1:3098139/1‑149 (MQ=12) cAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTGAATTCGAAGTGGTGTCGTTCGAACTcc < 1:3455770/150‑1 (MQ=32) acaaagcccGGGCGGGCATGGCCTGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTGAATTCGAAGTGGTGTCGTTCGAACTCcg > 2:648843/7‑150 (MQ=11) caaagcccGGGCGGGCATGGCCTGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTGAATTCGAAGTGGTGTCGTTCGAACTCcgc > 1:3993646/6‑150 (MQ=11) aaTGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTGAATTCGAAGTGGTGTCGTTCGAACTCcgc < 2:1518903/150‑1 (MQ=32) agcccGGGCGGGCATGGCCTGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTGAATTCGAAGTGGTGTCGTTCGAACTCCGCGAg > 1:1996267/3‑150 (MQ=11) cccGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTGAATTCGAAGTGGTGTCGTTCGAACTCCGCGAggg > 2:2843051/1‑150 (MQ=32) ccGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTGAATTCGAAGTGGTGTCGTTCGAACTCCGCGAGGGc > 2:319228/1‑150 (MQ=32) aGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTGAATTCGAAGTGGTGTCGTTCGAACTCCGCGAGGGCATCAgc < 2:3825996/150‑1 (MQ=32) gCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTGAATTCGAAGTGGTGTCGTTCGAACTCCGCGAGGGCATCAgcgc < 2:2611012/150‑1 (MQ=32) gCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTGAATTCGAAGTGGTGTCGTTCGAACTCCGCGAGGGCATCAgcgc > 2:458442/1‑150 (MQ=32) gCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTGAATTCGAAGTGGTGTCGTTCGAACTCCGCGAGGGCATCAgcgc > 2:1182786/1‑150 (MQ=32) aTGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTGAATTCGAAGTGGTGTCGTTCGAACTCCGCGAGGGCATCAGCGCAcc > 2:2005363/1‑150 (MQ=32) ccgcccgGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTGAATTCGAAGTGGTGTCGTTCGAACTCCGCGAGGGCATCAGCGCACCCttt < 2:2110464/150‑1 (MQ=32) ccgcccgGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTGAATTCGAAGTGGTGTCGTTCGAACTCCGCGAGGGCATCAGCGCACCCttt > 2:1838674/1‑150 (MQ=32) ccgcccgGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTGAATTCGAAGTGGTGTCGTTCGAACTCCGCGAGGGCATCAGCGCACCCttt > 1:1381639/1‑150 (MQ=32) | AAGACAATGAAAACTACACCCAGCTGGTTGAAGTATCGCTGGCGTATCGAAAGATCACGTGGGCTCACGATGTAGCCAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTGAATTCGAAGTGGTGTCGTTCGAACTCCGCGAGGGCATCAGCGCACCCTTT > NC_002947/4612888‑4613185 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |