| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,898,392 | G→A | 5.7% | intergenic (+58/‑150) | PP_4304 → / → sbp‑I | VIC family cation transporter/sulfate ABC transporter substrate‑binding protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,898,392 | 0 | G | A | 5.7% | 499.4 / 13.8 | 158 | intergenic (+58/‑150) | PP_4304/sbp‑I | VIC family cation transporter/sulfate ABC transporter substrate‑binding protein |
| Reads supporting (aligned to +/- strand): ref base G (75/74); new base A (3/6); total (78/80) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.95e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.02e-01 | |||||||||||
Only 100 of 164 total aligned reads displayed.
GCATGATTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑C‑‑CC‑GTAGGAGC‑GGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCAAGAACAAGGACGC > NC_002947/4898244‑4898538 | gcaTGATTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTgcgc < 1:581225/150‑1 (MQ=255)gcaTGATTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTgcgc < 2:3874884/150‑1 (MQ=255)gcaTGATTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTgcgc < 1:3123156/150‑1 (MQ=255)gcaTGAGTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTgcgc < 2:4069513/150‑1 (MQ=255) caTGATTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGGGcgcg > 1:1848507/1‑150 (MQ=255) gATTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTc < 1:3740188/150‑1 (MQ=255) gATTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCACTTCGCGGGTAAATACGCGCCAAAAGGCGCGGACCCGGCGCGGTc > 1:329407/1‑150 (MQ=255) aTTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGGGGACCGCGCACGGTcc < 1:172815/150‑1 (MQ=255) aTTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGCGCACGGTcc < 1:326604/150‑1 (MQ=255) aTTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGCGCACGGTcc < 1:2584774/150‑1 (MQ=255) aTTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCGCCTACCGGCGCGGACCGGGCGCGGTcc > 2:3954684/1‑150 (MQ=255) ttGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTcc‑‑‑c > 2:2593062/1‑150 (MQ=255) gCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTcc‑‑‑c‑‑cc < 2:397961/150‑1 (MQ=255) cccGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑C‑‑CC‑g > 1:4445094/1‑150 (MQ=255) ccGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑C‑‑CC‑Gt > 2:3992869/1‑150 (MQ=255) cGACCTGCCACAAGAAGACCCACGAGCTGGGGGCGGCGTTCTGTTCTCGCTGTGGGCATGGGTTGTTTCCCAAAGCGTGATAGCGCGTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGGGGACCGCGCACGGTccgcgcct < 1:3312484/150‑7 (MQ=38) cGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGTCTCTTCGCGGGTAAATCCGCTCCCACAGGCGCGGACCGTGCGCGGTCC‑‑‑C‑‑CC‑GTa < 1:4509600/150‑1 (MQ=255) cGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTGGTCGCGGGGGAATCCGGGCCTCCACGCGCGGCCCGGGGGCGGGGC‑‑‑C‑‑CC‑Gtg > 1:2334587/1‑149 (MQ=255) cGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑C‑‑CC‑GTa < 2:4161339/150‑1 (MQ=255) cGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑C‑‑CC‑GTa < 1:3414141/150‑1 (MQ=255) cGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑C‑‑CC‑GTa < 1:3978804/150‑1 (MQ=255) cGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑C‑‑CC‑GTa < 1:3978833/150‑1 (MQ=255) cGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑C‑‑CC‑GTa < 2:1325985/150‑1 (MQ=255) gACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGGTCTCGCTGTGGGAATGGGTTGTTTCCCAACGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACCGGCGCGGACCGTGCGCGGTCC‑‑‑C‑‑CC‑GTAg < 2:1865534/150‑1 (MQ=255) agggtgttggggcagattgccagcgactataacgggtgggtttatacgggttaaagaacaaaaaatgctttggttatgcttctgcctgtGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑C‑‑CC‑GTAg > 1:587378‑M1/90‑150 (MQ=255) ccTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑C‑‑CC‑GTAGGa < 2:2488502/150‑1 (MQ=255) ttggggcagattgccagcgactataacgggtgggtttatacgggttaaagaacaaaaaatgctttggttatgcttctgcctgtGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑C‑‑CC‑GTAGGAGC‑gg > 2:4382245‑M1/84‑150 (MQ=255) ttggggcagattgccagcgactataacgggtgggtttatacgggttaaagaacaaaaaatgctttggttatgcttctgcctgcGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑C‑‑CC‑GTAGGAGC‑gg > 1:2229850‑M1/84‑150 (MQ=255) ccACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑C‑‑CC‑GTAGGAGctg < 2:2306591/150‑3 (MQ=255) ggggcagattgccagcgactataacgggtgggtttatacgggttaaagaacaaaaaatgctttggttatgcttctgcctgtGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑C‑‑CC‑GTAGGAGC‑GGGt > 1:805386‑M1/82‑150 (MQ=255) acaAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCGCTTCGCGGGTAAAAACCCAACAAAAGGCGCCGACCGTGCGCCGGCC‑‑‑C‑‑CC‑GGAGGGGC‑gggg > 1:2344988/1‑149 (MQ=255) gggcagattgccagcgactataacgggtgggtttatacgggttaaagaacaaaaaatgctttggttatgcttctgcctgtGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑C‑‑CC‑GTAGGAGC‑GGGtt > 1:549156‑M1/81‑150 (MQ=255) gggcagattgccagcgactataacgggtgggtttatacgggttaaagaacaaaaaatgctttggttatgcttctgcctgtGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑C‑‑CC‑GTAGGAGC‑GGGtt > 1:3769476‑M1/81‑150 (MQ=255) gggcagattgccagcgactataacgggtgggtttatacgggttaaagaacaaaaaatgctttggttatgcttctgcctgtGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑C‑‑CC‑GTAGGAGC‑GGGtt > 1:2987203‑M1/81‑150 (MQ=255) aagaagACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑C‑‑CC‑GTAGGAGC‑GGGttt > 1:1809551‑M2/1‑147 (MQ=255) agaagaCCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑C‑‑CC‑GTAGGAGC‑GGGttta > 2:3498316‑M2/1‑146 (MQ=255) agaagaCCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑C‑‑CC‑GTAGGAGC‑GGGttta > 2:2373891‑M2/1‑146 (MQ=255) cagattgccagcgactataccgggtgggtttatacgggttaaagaacaaaaaatgctttggttatgcttctgcctgtGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑C‑‑CC‑GTAGGAGC‑GGGTTTAc > 1:2574656‑M1/78‑150 (MQ=255) agattgccagcgactagaacgggtgggtttatacgggttaaagaacaaaaaatgctttggttatgcgtctgcctgtGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑C‑‑CC‑GTAGGAGC‑GGGTTTAcc > 2:4456995‑M1/77‑150 (MQ=255) agaCCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑C‑‑CC‑CTAGGAGC‑GGGtttaccc < 1:3335109‑M2/150‑8 (MQ=255) gaCCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGGG‑‑‑GGACCGCGCACGGTCCGCGC‑‑CT‑GTAGGAGC‑GGAtttacccg > 1:1549042‑M2/1‑142 (MQ=255) gaCCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCGCGGCGCGGGGGAAAGCCCTCCTAAAGGCGCGGGCCCGGCGCGGGGC‑‑‑C‑‑CC‑CAAGGAGCGGGGTTTAccc > 1:498138/1‑150 (MQ=255) ccACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑C‑‑CC‑GTAGGAGC‑GGGtttacccgcga > 2:750041‑M2/1‑139 (MQ=255) cACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑C‑‑CC‑GTAGGAGC‑GGGtttacccgcgaa > 1:2145809‑M2/1‑138 (MQ=255) gccgggggCGGCGTTCTGTTCTCGCTGTGGGAAGGGGTTGTTTCCCAACGCGTGATCGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACCGGCGCGGACCGTGCGCGGTCC‑‑‑CCGCCTGTAGGAGC‑GGATTTACCCGCGAaga < 2:2697040/147‑1 (MQ=25) gCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑C‑‑CC‑GTAGGAGC‑GGGtttacccgcgaagaggc > 2:2737997‑M2/1‑133 (MQ=255) aGGGGGCGGCGTTCTGTTCGCGCTGTGGGATTGGGTTGTGTCCCAAAGCGTGATAGCGCCGGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCGACCGGCGCGGACCGTGCGCGGTCC‑‑‑C‑‑CC‑GTAGGAGC‑GGGtttacccgcgaagaggccg > 2:3422088‑M2/1‑131 (MQ=255) aGGGGGCGGCGTTCTGTACTCGCTGTGGGAATGGGTTGTTTCCCAACGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTCCAGGCGCGGACCGTGCGCGGTCC‑‑‑C‑‑CC‑GTAGGAGC‑GGGtttacccgcgaagaggccg > 2:2121444‑M2/1‑131 (MQ=255) ggggCGGCGTTCTGTACTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTGTCCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑C‑‑CC‑GTAGGAGC‑GGTtttacccgcgaagaggccggc > 1:679768‑M2/1‑129 (MQ=255) ggcgTTCTGTTCTCGCTGTGGGATGGGGTTGTTGCCCAACGCTTTATAGCGCCTGCGCCGGCCTCTTCGCGGTTAAATCCGCTCCTACAGGCGCGGACCGGGCGCGGGCC‑‑‑C‑‑CC‑GTAGGAGC‑GGTTTTACCCGCGAAGAGGCCGGCACAgg < 2:3899705/150‑1 (MQ=38) tctcGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑C‑‑CC‑GTAGGAGC‑GGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATa < 2:1075527/150‑1 (MQ=255) tcGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑C‑‑CC‑GTAGGAGC‑GGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAAc > 2:4057247/1‑150 (MQ=255) cTGTGGTATTGGGTTTTTTCCCAATGCGTGATAGCGCGTGCGCCGGCCTCTTGGGGGGTAAATCCGCTCCTACAGGCGGGGACCGTGCGCGGTCC‑‑‑C‑‑CC‑GTAGGAGC‑GGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCaa < 1:3727839/150‑1 (MQ=38) tgtgGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCCTGCGCGGTCC‑‑‑C‑‑CC‑GGAGGAGC‑GGGTTTAACCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCaaa > 2:2034637/1‑150 (MQ=255) aTGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGTTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑C‑‑CC‑GTAGTAGC‑GGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCAtttt < 2:3079168/150‑1 (MQ=255) tttCCCAAAGCGAGATAGCGCCTGCGCCGGCCTCTTAGCGGGTAAATACGCTCCAACAGGGGCGGACCGGGCGCGGTCC‑‑‑C‑‑CC‑CTAGGAGC‑GGGTTTACCCGCGAAGAGGCCGGGACAGGGAGAAGCATAACCAAAGCATTTTTTGTTCtt > 1:4030613/1‑150 (MQ=38) ccAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑C‑‑CC‑GTAGGAGC‑GGGTTTACCCGCTAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAAc < 2:1578168/150‑1 (MQ=255) ccAAAGCGTGATAGCGCCTGCGCCGGCCTCTTAGCGGGGAAATCCGCTCCTACAGGCGCGGACCCTGCGCGGTCC‑‑‑C‑‑CC‑CGAGGAGC‑GGGGTTACCCCCGAAGAGGCCGGCCCCGGCAGAAGCAGAACCAAAGCAATTTTTGTTCTTTAAc > 2:607255/1‑150 (MQ=255) tGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑C‑‑CC‑GTAGGAGC‑GGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATaa > 2:4497605/1‑150 (MQ=255) ccTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑C‑‑CC‑GTAGGAGC‑GGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAacccaccc < 2:2571217/150‑1 (MQ=255) gcgcCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑C‑‑CC‑GTAGGAGC‑GGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGtt < 2:2961645/150‑1 (MQ=255) CCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑C‑‑CC‑GTAGGAGC‑GGTTTTACCCGCTAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTtata > 2:893870‑M1/1‑150 (MQ=255) TCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑C‑‑CC‑GTAGGAGC‑GGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCt < 2:3901804‑M1/150‑1 (MQ=255) TCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑C‑‑CC‑GTAGGAGC‑GGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCt < 2:2548209‑M1/150‑1 (MQ=255) TTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑C‑‑CC‑GTAGGAGC‑GGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTgg < 1:344766‑M1/150‑1 (MQ=255) CGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑C‑‑CC‑GTAGGAGC‑GGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCa < 1:4377219‑M1/150‑1 (MQ=255) AATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑C‑‑CC‑GTTGGAGC‑GGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGccc > 1:3992869‑M1/1‑150 (MQ=255) aTCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑C‑‑CC‑GTAGGAGC‑GGGtttacccgcgaagaggccggcacaggcgctatcacgctttgggaaacaacccattcccacagcgagaacagaacgccgccccctgctcgtgggtcttcttgt < 2:2386097‑M2/150‑103 (MQ=255) tCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑C‑‑CC‑GTAGGAGC‑GGGtttacccgcgaagaggccggcgcaggcgctatcacgctttgggaaacaacccattcccacagcgagaacagaacgccgccccctgctcgtgggtcttc > 1:1758912‑M2/1‑47 (MQ=255) tCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑C‑‑CC‑GTAGGAGC‑GGGtttacccgcgaagaggccggcacaggcgctatcacgctttgggaaacaacccattcccacagcgagaacagaacgccgccccctgctcgtgggtcttcttgtg < 2:2552223‑M2/150‑104 (MQ=255) tCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑C‑‑CC‑GTAGGAGC‑GGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCa > 2:4517156/1‑150 (MQ=255) tCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑C‑‑CC‑GTAGGAGC‑GGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCa > 1:974157/1‑150 (MQ=255) tCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑C‑‑CC‑GTAGGAGC‑GGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCa > 1:3552916/1‑150 (MQ=255) tCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑C‑‑CC‑GTAGGAGC‑GGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCa > 2:224993/1‑150 (MQ=255) tCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑C‑‑CC‑GTAGGAGC‑GGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCATATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCa > 2:3852909/1‑150 (MQ=255) tCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑C‑‑CC‑GTAGGAGC‑GGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCATATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCa > 2:3852955/1‑150 (MQ=255) cGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑C‑‑CC‑GTAGGAGC‑GGAtttacccgcgaagaggccggcgcaggcgctatcacgctttgggaaacaacccattcccacagcgagaacagaacgccgccccctgctcgtgggtcttcttgtggc < 1:4012737‑M2/150‑106 (MQ=255) cGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑C‑‑CC‑GTAGGAGC‑GGAtttacccgcgaagaggccggcgcaggcgctatcacgctttgggaaacaacccattcccacagcgagaacagaacgccgccccctgctcgtgggtcttcttgtggc < 1:1029145‑M2/150‑106 (MQ=255) gCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑C‑‑CC‑GTAGGAGC‑GGGtttacccgcgaagaggccggcgcaggcgctatcacgctttgggaaacaacccattcccacagcgagaacagaacgccgccccctgctcgtgggtcttcttgtggca < 1:4106462‑M2/150‑107 (MQ=255) gCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑C‑‑CC‑GTAGGAGC‑GGGtttacccgcgaagaggccggcgcaggcgctatcacgctttgggaaacaacccattcccacagcgagaacagaacgccgccccctgctcgtgggtcttcttgtggca < 2:1395664‑M2/150‑107 (MQ=255) gCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑C‑‑CC‑GTAGGAGC‑GGGtttacccgcgaagaggccggcacaggcactatcacgctttgggaaacaacccattcccacagcgagaacagaacgccgccccctgctcgtgggtcttcttgtggca < 2:1657610‑M2/150‑107 (MQ=255) gCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑C‑‑CC‑GTAGGAGC‑GGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAaca > 2:3068818/1‑150 (MQ=255) gCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑C‑‑CC‑GTAGGAGC‑GGAtttacccgcgaagaggccggcgcaggcgctatcacgcttt < 2:336026‑M2/84‑41 (MQ=255) tCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑C‑‑CC‑GTAGGAGC‑GGAtttacccgcgaagaggccggcgcaggcgctatcacgctttgggaaacaacccattcccacagcgagaacagaacgccgccccctgctcgtgggtcttcttgtggcagg < 1:2792248‑M2/150‑109 (MQ=255) tCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑C‑‑CC‑GTAGGAGC‑GGAtttacccgcgaagaggccggcgcaggcgctatcacgctttgggaaacaacccattcccacagcgagaacagaacgccgccccctgctcgtgggtcttcttgtggcagg < 1:2452971‑M2/150‑109 (MQ=255) cTACAGGCGCGGACCGTGCGCGGTCC‑‑‑C‑‑CC‑GTAGGAGC‑GGAtttacccgcgaagaggccggcgcaggcgctatcacgctttgggaaacaacccattcccacagcgagaacagaacgccgccccctgctcgtgggtcttcttgtggcaggtc < 2:41815‑M2/150‑111 (MQ=255) tACAGGCGCGGACCGTGCGCGGTCC‑‑‑C‑‑CC‑GTAGGAGC‑GGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCtt > 1:1317583/1‑150 (MQ=255) tACAGGCGCGGACCGTGCGCGGTCC‑‑‑C‑‑CC‑GTAGGAGC‑GGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCtt > 2:228877/1‑150 (MQ=255) cAGGCGCGGACCGTGCGCGGTCC‑‑‑C‑‑CC‑GTAGGAGC‑GGAtttacccgcgaagaggccggcgcaggcgctatcacgctttgggaaacaacccattcccacagcgagaacagaacgccgccccctgctcgtgggtcttcttgtggcaggtcggg < 1:2577287‑M2/150‑114 (MQ=255) tacgggggACCGCGCACGGTCC‑‑‑C‑‑CC‑GTAGGAGC‑GGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCaa > 2:3734405/7‑150 (MQ=255) aGGCGCGGACCGTGCGCGGTCC‑‑‑C‑‑CC‑GTAGGAGC‑GGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCaa > 1:731513/1‑150 (MQ=255) aGGCGCGGACCGTGCGCGGTCC‑‑‑C‑‑CC‑GTAGGAGC‑GGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCaa < 2:329407/150‑1 (MQ=255) aGGCGCGGACCGTGCGCGGTCC‑‑‑C‑‑CC‑GTAGGAGC‑GGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCaa > 1:2216188/1‑150 (MQ=255) gcgcGGACCGTGCGCGGTCC‑‑‑C‑‑CC‑GTAGGAGC‑GGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCAAGa > 1:1707699/1‑150 (MQ=255) gcgcGGACCGTGCGCGGTCC‑‑‑C‑‑CC‑GTAGGAGC‑GGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAAACCACCCGTTATAGTCGCTTGCAATCTGCCCCAACACCCATAAAGa > 1:141262/1‑150 (MQ=255) cgggggACCGCGCACGGTCC‑‑‑C‑‑CC‑GTAGGAGC‑GGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTGCAAGa > 2:4282076/5‑150 (MQ=255) cgcgGACCGTGCGCGGTCC‑‑‑C‑‑CC‑GTAGGAGC‑GGGtttacccgcgaagaggccggcgcaggcgctatcacgctttgggaaacaacccattcccacagcgagaacagaacgccgccccctgctcgtgggtcttcttgtggcaggtcgggcaat < 1:1058902‑M2/150‑118 (MQ=255) ggggACCGTGCGGGGTCC‑‑‑C‑‑CC‑GTTGGAGC‑GTGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCAAGAAc < 1:2756056/148‑1 (MQ=255) ggggACCGTCCGGGGCCC‑‑‑C‑‑CC‑GTTGGTGC‑GGTTTGACCCGCTAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCAAGAAc < 1:4197290/148‑1 (MQ=255) tGCGCGGTCC‑‑‑C‑‑CC‑GTAGGAGC‑GGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCAAGAACAAGGACGc > 2:1640380/1‑150 (MQ=255) | GCATGATTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCC‑‑‑C‑‑CC‑GTAGGAGC‑GGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCAAGAACAAGGACGC > NC_002947/4898244‑4898538 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |