| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,101,905 | T→G | 12.4% | intergenic (+21/+132) | PP_4488 → / ← phhR | hypothetical protein/sigma‑54 dependent transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,101,905 | 0 | T | G | 12.4% | 310.6 / 14.8 | 126 | intergenic (+21/+132) | PP_4488/phhR | hypothetical protein/sigma‑54 dependent transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base T (26/78); new base G (9/8); total (40/86) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.96e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 128 total aligned reads displayed.
GTTATTTCCATGAGCGAAGTGCCCAATGTGTGCGAAGTCGTGCCGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACA‑GCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTT > NC_002947/5101756‑5102054 | tATTTCCATGAGCGAAGTGCCCAATGTGTGCGAAGTCGTGCCGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGc < 1:1311210/150‑1 (MQ=255) aTTTCCATGAGCGAAGTGCCCAATGTGTGCGAAGTCGTGCCGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCg < 1:2170397/150‑1 (MQ=255) ttCCATGAGCGAAGTGCCCAATGTGTGCGAAGTCGTGCCGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCggg > 2:2880210/1‑150 (MQ=255) tCCATGAGCGAAGTGCCCAATGTGTGCGAAGTCGTGCCGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGc < 1:4171969/150‑1 (MQ=255) tCCATGAGCGAAGTGCCCAATGTGTGCGAAGTCGTGCCGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGc < 1:4171983/150‑1 (MQ=255) tCCATGAGCGAAGTGCCCAATGTGTGCGAAGTCGTGCCGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGc < 1:101575/150‑1 (MQ=255) cATGAGCGAAGTGCCCAATGTGTGCGAAGTCGTGCCGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGccc > 1:2613432/1‑150 (MQ=255) cATGAGCGAAGTGCCCAATGTGTGCGAAGTCGTGCCGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGccc < 1:3792641/150‑1 (MQ=255) cATGAGCGAAGTGCCCAATGTGTGCGAAGTCGTGCCGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGccc > 2:3440893/1‑150 (MQ=255) cATGAGCGAAGTGCCCAATGTGTGCGAAGTCGTGCCGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGccc < 2:3680782/150‑1 (MQ=255) aTGAGCGAAGTGCCCAATGTGTGCGAAGTCGTGCCGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCGCAGGGcccc < 2:391128/150‑1 (MQ=255) tGAGCGAAGTGCCCAATGTGTGCGAAGTCGTGCCGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCGCAGGGccccc < 1:70604/150‑2 (MQ=255) tGAGCGAAGTGCCCAATGTGTGCGAAGTCGTGCCGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCGCAGGGccccc < 2:2158162/150‑2 (MQ=255) aGCGAAGTGCCCAATGTGTGCGAAGTCGTGCCGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCGCAGGGcccccga < 2:1992461/150‑4 (MQ=255) gCGAAGTGCCCAATGTGTGCGAAGTCGTGCCGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATc < 2:1298605/150‑1 (MQ=255) gCGAAGTGCCCAATGTGTGCGAAGTCGTGCCGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATc < 2:1298598/150‑1 (MQ=255) gCGAAGTGCCCAATGTGTGCGAAGTCGTGCCGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATc < 2:1298518/150‑1 (MQ=255) cGAAGTGCCCAATGTGTGCGAAGTCGTGCCGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCAATcg > 1:4066317/1‑150 (MQ=255) gAAGTGCCCAATGTGTGCGAAGTCGTGCCGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATcgc < 1:4272942/150‑1 (MQ=255) aGTGCCCAATGTGTGCGAAGTCGTGCCGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGa > 2:4397312/1‑150 (MQ=255) aGTGCCCAATGTGTGCGAAGTCGTGCCGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGa < 1:2665472/150‑1 (MQ=255) aGTGCCCAATGTGTGCGAAGTCGTGCCGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGa < 1:895071/150‑1 (MQ=255) aGTGCCCAATGTGTGCGAAGTCGTGCCGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGa < 1:3677267/150‑1 (MQ=255) cccAATGTGTGCGAAGTCGTGCCGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGAcaca > 2:3926776/1‑150 (MQ=255) cAATGTGTGCGAAGTCGTGCCGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAg < 2:857914/150‑1 (MQ=255) cAATGTGTGCGAAGTCGTGCCGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAg > 2:3461599/1‑150 (MQ=255) cAATGTGTGCGAAGTCGTGCCGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCGGCGGGCCCCGATCGCGGCACAAg > 1:755246/1‑150 (MQ=255) cAAAGTGTGCGAAGTCGTGCCGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATACTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCATGGAAACGGGGGCCCAGCGCGCCCCAATCGCGACACAAg > 2:967592/1‑150 (MQ=255) aaTGTGTGCGAAGTCGTGCCGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAgg < 1:2811271/150‑1 (MQ=255) aaTGTGTGCGAAGTCGTGCCGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTAGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAgg < 2:165970/150‑1 (MQ=255) aaTGTGTGCGAAGTCGTGCCGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAAGACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAgg < 2:3832805/150‑1 (MQ=255) cGAAGTCGTGCCGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTccc < 2:1474878/150‑1 (MQ=255) gAAGTCGTGCCGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCca < 1:3727409/150‑1 (MQ=255) gAAGTCGTGCCGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCca < 1:2581821/150‑1 (MQ=255) gAAGTCGTGCCGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCca < 1:1531848/150‑1 (MQ=255) gAAGTCGTGCCGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCca < 1:2606968/150‑1 (MQ=255) gAAGTCGTGCCGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCAGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCca < 1:1531836/150‑1 (MQ=255) gTCGTGCCGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCGGCGGGCCCCGATCGCGGCACAAGGCCGCGCCCCCAg > 1:2158503/1‑150 (MQ=255) cGTGCCGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGAt < 1:2198926/150‑1 (MQ=255) gCCGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAAt < 2:4200064/150‑1 (MQ=255) cGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAATGCCGCTCCCACAGATAATgc > 1:4097810/1‑150 (MQ=255) cGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATgc < 2:1385211/150‑1 (MQ=255) cGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATgc < 1:1602903/150‑1 (MQ=255) ccGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTc < 2:4108792/150‑1 (MQ=255) ccGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTc < 2:4226954/150‑1 (MQ=255) tGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCa < 1:416133/150‑1 (MQ=255) acatACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCaga < 2:507101/147‑1 (MQ=255) aCCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCaga < 1:2915516/150‑1 (MQ=255) aCCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCaga < 1:1372953/150‑1 (MQ=255) aCCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCaga < 2:831100/150‑1 (MQ=255) aCCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCaga < 2:4147596/150‑1 (MQ=255) ccTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCagag < 2:835361/150‑1 (MQ=255) cGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGcaca < 2:1121645/150‑1 (MQ=255) gAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACA‑g < 2:1934114/150‑1 (MQ=255) gACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGACCGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACC‑GCGt > 2:4388111/1‑150 (MQ=255) gACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACA‑GCGt < 2:563802/150‑1 (MQ=255) tCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACA‑GCGTAtt < 2:3087010/150‑1 (MQ=255) ccAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCGGCGGGCCCCTATCGCGACACAAGGCCGCACCCACAGAAAATGCGCTCAGCCACAGCACA‑GCGGATTAc > 1:3303754/1‑150 (MQ=255) aGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCAATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCCCA‑GCGGATTAACt > 2:3955135/1‑150 (MQ=255) gggCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACA‑GCGTATTACCtg < 1:4423831/150‑1 (MQ=255) ggCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACA‑GCGTATTACCtgt < 2:1988701/150‑1 (MQ=255) ccAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACA‑GCGTATTACCTGTgg < 2:1919322/150‑1 (MQ=255) ccAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACA‑GCGTATTACCTGTgg < 1:3067269/150‑1 (MQ=255) ccAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACA‑GCGTATTACCTGTgg < 2:2270741/150‑1 (MQ=255) agaagaACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGAGCTCAGCCAGAGCACA‑CCGTATTAACGGTgggg > 2:252496/1‑149 (MQ=255) aGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACA‑GCGTATTACCAGTGGGa > 2:252475/1‑150 (MQ=255) gAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGGTAATACGCTGTGCTCTGGCTGA‑GCGCATTATCTGTGGGAg < 1:1373966/150‑1 (MQ=21) gCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCGGCGGGCCCCAATCGCGCCACAAGGCCCCACCCACAGAAAAAGCGCGCAGCCAGAGCACACCCGTA‑TAACTGGGGGAGCgg > 1:1487042/1‑150 (MQ=255) acaTTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCAGCGGGCCCCAATCGCGACACAAAGCCGCGCCCACACAAAAATCGCGCAGCCACAGCACA‑CCCGATTACCGGTGGGAgccgcc > 1:4091479/1‑150 (MQ=255) aTTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCAGCGGGCCCCTAAAGCGACAAAAGGCCCCGCCCACCCATAAATCGCGCCGCCAGAGCACA‑CCCGATTACCAGTGGGGGCGGccgg > 1:2421595/1‑148 (MQ=255) ttCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCCGCGGGCCCCCAACCCCCCACAACGCCCCCCCCCCCCATAAAGCGCGCACCCCCAGCACC‑CCGGGTTACCCGTGGGGgccgcccgg > 1:992571/1‑147 (MQ=255) tcGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCGGCGGGCCCCAAACGCGCCACAAGGCCCCGCCCACAGATAAAGCGCGCAGCCCCAACCCA‑CCGGAATAACGGTGGGAGCGGCCgtgtgt > 1:2587972/1‑150 (MQ=255) gAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACA‑GCGTATTAACAGTGGGAGCGGCCATGTGTcg > 2:1753163/1‑150 (MQ=255) aaTACCGCGTTTTGGGGAACGGCTGCTCCAACGGCTTATACCTTGTAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACT‑GCGTATTACCTGTGGGAGCGGCCTTGTGTcgc < 1:542438/150‑1 (MQ=39) aaTACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGTAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACA‑GCGTATTACCTGTGGGAGCGGCCTTGTGTcgc < 1:1420729/150‑1 (MQ=255) aaTACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGGCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACA‑GCGTATTACCTGTGGGAGCGGCCTTGTGTcgc < 2:2941601/150‑1 (MQ=255) cgcgTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCGGCGGGCCCCAATCGCGACACAAGGCCGCTCCCACAGATAATGCGCGCAGCCCGAGCACA‑GCGGATTACCGGTGGGAGCGGCCGTGTGTCGCGAAAg > 2:2252991/1‑150 (MQ=38) tGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGATCAGCCAGAGCACA‑GGGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACt < 2:447045/150‑1 (MQ=255) gATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACACGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACA‑GCGTTTTACGTGTGGGTGCGGCCTTGTGTCGCGAAAGGACTg < 2:428790/150‑1 (MQ=255) ggtaaCGGCTGCTCCAACGGCTGATACCTTGTAATCGGGGGCCCGGCGGGCCCCTATCGCGACACACGGCCGCTCCCACAGATAATGCGCCCAGCCAGCGCACC‑GCGTTTTACCTGTGGGCGCGGCCTTGTGCCGCGAAAGGACTGCAAc < 1:2170128/147‑1 (MQ=255) ctCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACA‑GCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCGTTGCAGTcctttc < 2:1670267/150‑5 (MQ=255) ctCCAACGGCTGATACCTTGGAATCGGGGGCCCAGCGGGCCCCTATCGCCGCCCAAGGCCCCGCCCAAACAAAAAACCCTAAACCCCACCCCA‑GCGGATTAACAGTGGGGGCCGCCCATTGTCGCGAAAGGACAGCAACCCAGTcccccg > 2:1125626/1‑147 (MQ=255) cAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGCCACCAGGCCCCTCCCACACATAAAGCGCTCAGCCCGCGCACA‑GCCGCTTAACGGTGGGAGCGGCCGTGTGTAGCCCAAGGACGGCCACCCAGTCCCAGGtgc > 2:4176148/1‑148 (MQ=255) aaCGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGCCACAAGGCCCCTCCCACAGATAAAGCGCTCACCCAGAGCACC‑GCGTATTACCGGTGGGAGCGGCCGTGTGGCGCGAAAGGACTGCAACGCAGTCCCAGGGTCt > 2:1364579/1‑150 (MQ=255) aCGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACA‑GCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCtt < 1:2227404/150‑1 (MQ=255) tGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACACGGCCGCTCCCACAGAGAATGCGCCCCGCCAGAGCACA‑GCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGAcc < 1:1449452/150‑1 (MQ=255) ctttGGAATGGGGGGCCCTGCGGGCCCCTATCGCGACACACGGCCGCTCCCACTTTTAATGCGCTCAGCCATAGCACA‑GCTTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACcaacaa < 1:270096/148‑1 (MQ=38) ccTTGTATTCGGGGGCCGGGCGGGCCCCTATCGCGACACAAGGCCGCTCCAACAGATAATGCGCTCAGCCTTAGAACA‑GCTTTTTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACcaacaa < 1:270009/150‑1 (MQ=38) cTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACTCAAGGCCGCTCCCACATATATTGCGCTCAGCCAGAGCACA‑GCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCaacaac < 2:2254198/150‑1 (MQ=255) ttGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACA‑GCGTATTACCTGTGGGAGCGGCCATGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACt > 2:2988745/1‑150 (MQ=255) gcgataggggCCCGCAGGGCCCCCATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACA‑GCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAAt > 2:1479312/7‑150 (MQ=38) gcgataggggCCCGCAGGGCCCCCATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACA‑GCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACAGCAACGCAGTCCCAGGTTCTTTGACCCACAACaaaa > 2:1479392/7‑149 (MQ=37) atggggggCCCGGCGGGCCCATATCGCGACACAAGGCCGCTCCCACATATATGGCGCACAGCCTGAGCACA‑GCTTTTTACGTGTGGGCGGGGCCTTGTGGCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATcc < 1:3440893/147‑1 (MQ=255) gggggCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACCGATAATGCGCGCCGCCCGAGCCCA‑GCGGATTACCAGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACCCCGTCCCCGGTGCTTTGACCAACAACTAATccgcc > 1:1488828/1‑150 (MQ=37) gggggCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACA‑GCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACCAATccgcc < 2:4493724/150‑1 (MQ=255) gggggCCCGGCGGGCCCCTAGCGCGACACACGGCCGCTCCCACAGATATTGCGCTCAGCCAGTGCACT‑GCTTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATccgcc < 1:447182/150‑1 (MQ=255) ggggCCCTGCGGGCCCCTATCGCGACACAATGCCGCTCCCACAGATAAAGCGCTCAGCCAGAGCACA‑GCGTATTACCAGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCATTTACCAACAACTAAAacgccg > 1:3762769/1‑150 (MQ=38) ggggCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACA‑GCGTATTACCTGTGGGAGCGGCCTTGTGGCGCGAAAGGACTGCAACGCCGTCCCAGGTTCTTTGACCAACAACTAATccgccc > 2:3734464/1‑149 (MQ=255) gCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCGCAGCCAGAGCACA‑GCGTATTAACAGTGGGAGCGGCCGTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGGTCTTTGACCAACAAAAAAACCGCCGACt > 1:730805/1‑150 (MQ=38) tGCGGGCCCCTATCGCTACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACA‑GCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGtt > 2:3713821/1‑150 (MQ=255) | GTTATTTCCATGAGCGAAGTGCCCAATGTGTGCGAAGTCGTGCCGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACA‑GCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTT > NC_002947/5101756‑5102054 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |