New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1426821	NA (NA)	8 (0.500)	5/276	1.3	NA	coding (712/1422 nt)	PP_1250	group II intron‑encoding maturase
	?	NC_002947	= 1426852	NA (NA)					coding (743/1422 nt)	PP_1250	group II intron‑encoding maturase

CGACATCCTCATGGCCTGCATCGAACGTCGGATCAGAGACAAGTGCGTACTCAGGCTTATCCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1426709‑1426821 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acggcGAGAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGGATAAGCCTGAGTACGCACTTGTCTCTGATCCGACGTTCGATGCAGGCCATGAGGATGTCGTGA  <  NC_002947/1426852‑1426706                                                                                                                                                                                                                                                                      CGACATCCTCATGGCCTGCATCGAACGTCGGATCAAAGACAAGTGCGTACTCAGGCTTATTCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGCAGGAG‑GGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGG                                                                                                               <  2:255441/150‑1  GACATCCTCATGGCCTGCATCGAACGTCGGATCAGAGACAAGTGCGTACTCAGGCTTATCCGCCGATACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAG‑CAACGGCGAGAGCGGGCCGCGTTGCGGCGTCCCCTCCTGCCGTGGG                                                                                                              <  2:13883/150‑1    CATCCTCATGGCCTGCATCGAACGTCGGATCAGAGACAAGTGCGTACTCAGGCTTATCCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGCGAGAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGC                                                                                                             <  2:337759/150‑1      TCCTCATGGCCTGCATCGAACGTCGGATCAGAGACAAGGGCGTACTCAGGCTTATCCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGCAGGAG‑GGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGA                                                                                                          <  1:334660/150‑1                CTGCATCGAACGTCGGATCAGAGACAAGTGCGTACTCAGGCTTATCCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGCGAGAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGG                                                                                                               <  1:367589/136‑1                CTGCATCGAACGTCGGATCAGAGACAAGTGCGTACTCAGGCTTATCCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGCGAGAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGG                                                                                                               >  2:367589/1‑136                                                        CTTATTCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGCAGGAG‑GGGCCGCCTTGCGGCGTCCCCTC                                                                                                                        >  1:139484/1‑86                                                        CTTATTCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGCAGGAG‑GGGCCGCCTTGCGGCGTCCCCTC                                                                                                                        <  2:139484/86‑1                                                                                                               GGCGAGAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGGATAAGCCTGAGTACGCACTTGTCTCTGATCCGACGTTCGATGCAGGCCATGAGGATGTCGTGA  <  1:30668/150‑1                                                                                                               GGCGAGAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGA                                                                                             <  1:303393/59‑1                                                                                                               GGCGAGAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGA                                                                                             >  2:303393/1‑59                                                                                                                                                                                                                                                                      CGACATCCTCATGGCCTGCATCGAACGTCGGATCAGAGACAAGTGCGTACTCAGGCTTATCCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1426709‑1426821 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acggcGAGAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGGATAAGCCTGAGTACGCACTTGTCTCTGATCCGACGTTCGATGCAGGCCATGAGGATGTCGTGA  <  NC_002947/1426852‑1426706

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.