New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 4747991 = | 23 (1.380) | 4 (0.250) | 3/276 | 1.8 | 15.9% | intergenic (‑18/+58) | PP_4200/etfA | hypothetical protein/electron transfer flavoprotein subunit alpha |
? | NC_002947 | 4748033 = | 20 (1.240) | intergenic (‑60/+16) | PP_4200/etfA | hypothetical protein/electron transfer flavoprotein subunit alpha | |||||
Rejected: Frequency below/above cutoff threshold. |
AGGACGAAGAAGCGCCGATCTTCCAGGTGGCCGACTACGGCCTGGTCGCTGACCTGTTCGAAGCGGTTCCGGAGCTGGAAAAGCTGGTCTGATCCGCCTGCTTCACTTAT‑AAAGAACCCGGCCCTCGTTTTGAGGGTCGGGTTTTTTTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4748140‑4747991 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tttatAAGTGAAGCAGGCGGATCAGACCAGCTTTTCCAGCTCCGGAACCGCTTCGAACAGGTCAGCGACCAGGCCGTAGTCGGCCACCTGGAAGATCGGCGCTTCTTCGTCCTTGTTGATCGCCACGATCACTTTGGAGTCTTTCATGCCG > NC_002947/4748033‑4748178 AGGACGAAGAAGCGCCGATCTTCCAGGTGGCCGACTACGGCCTGGTCGCTGACCTGTTCGAAGCGGTTCCGGAGCTGGAAAAGCTGGTCTGATCCGCCTGCTTCACTTAT‑AAAGAACCCGGCCCTCGTTTTGAGGGTCGGGTTTTTTTAT < 1:229851/150‑1 AGGACGAAGAAGCGCCGATCTTCCAGGTGGCCGACTACGGCCTGGTCGCTGACCTGTTCGAAGCGGTTCCGGAGCTGGAAAAGCTGGTCTGATCCGCCTGCTTCACTTAT‑AAAGAACCCGGCCCTCGTTTTGAGGGTCGGGTTTTTTTAT < 1:229853/150‑1 GCCGATCTTCCAGGTGGCCGACTACGGCCTGGTCGCTGACCTGTTCGAAGCGGTTCCGGAGCTGGAAAAGCTGGTCTGATCCGCCTGCTTCACTTATAAAAAAACCCGACCCTCAAAACGAGGGCCGGG‑TTCTTTATAAGTGAAGCAGGC < 1:108673/150‑1 TTAT‑AAAGAACCCGGCCCTCGTTTTGAGGGTCGGGTTTTTTTATAAGTGAAGCAGGCGGATCAGACCAGCTTTTCCAGCTCCGGAACCGCTTCGAACAG < 1:204557/99‑1 TTAT‑AAAGAACCCGGCCCTCGTTTTGAGGGTCGGGTTTTTTTATAAGTGAAGCAGGCGGATCAGACCAGCTTTTCCAGCTCCGGAACCGCTTCGAACAG > 2:204557/1‑99 TTAT‑AAAGAACCCGGCCCTCGTTTTGAGGGTCGGG‑TTTTTTATAAGTGAAGCAGGCGGATCAGACCAGCTTTTCCAGCTCCGGAACCGCTTCGAACAGGTCAGCGACCAGGCCGTAGTCGGCCACCTGGAAGATCGGCGCTTCTTCGTCC > 2:256528/1‑150 TTTAAAAGTGAAGCAGGCGGATCAGACCAGCTTTTCCAGCTCCGGAACCGCTTCGAACAGCTCAGCGACCAGGCCGTAGTCGGCCACCTGGAAGATCGGCGCTTCTTCGTCCTTGTTGATCGCCACGACCACTTTGTAGTCTTTCATGCC > 1:373868/1‑150 TTATAAGTGAAGCAGGCGGATCAGACCAGCTTTTCCAGCTCCGGAACCGCTTCGAACAGGTCAGCGACCAGGCCGTAGTCGGCCACCTGGAAGATCGGCGCTTCTTCGTCCTTGTTGATCGCCACGATCACTTTGGAGTCTTTCATGCCG > 1:209838/1‑150 AGGACGAAGAAGCGCCGATCTTCCAGGTGGCCGACTACGGCCTGGTCGCTGACCTGTTCGAAGCGGTTCCGGAGCTGGAAAAGCTGGTCTGATCCGCCTGCTTCACTTAT‑AAAGAACCCGGCCCTCGTTTTGAGGGTCGGGTTTTTTTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4748140‑4747991 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tttatAAGTGAAGCAGGCGGATCAGACCAGCTTTTCCAGCTCCGGAACCGCTTCGAACAGGTCAGCGACCAGGCCGTAGTCGGCCACCTGGAAGATCGGCGCTTCTTCGTCCTTGTTGATCGCCACGATCACTTTGGAGTCTTTCATGCCG > NC_002947/4748033‑4748178 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |