New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4751964 =	17 (1.020)	2 (0.140)	3/252	1.7	13.8%	intergenic (+18/+54)	PP_4203/mqsA	ubiquinone oxidoreductase electron transfer flavoprotein/type II toxin‑antitoxin MqsRA system antitoxin/DNA‑binding transcriptional repressor
	?	NC_002947	4752008 =	10 (0.680)					intergenic (+62/+10)	PP_4203/mqsA	ubiquinone oxidoreductase electron transfer flavoprotein/type II toxin‑antitoxin MqsRA system antitoxin/DNA‑binding transcriptional repressor
Rejected: Frequency below/above cutoff threshold.

TGAAAACGGCAAGACCACCCCGCCAGTGGCGTTGGTGAAACTGCTCAAGCTGCTGGATCGCCATCCAGAACTCTTTGAGGAAGTGCGTACTGCCTGATAATGGCAGCCAACAAAAAGCCCCCGGCTCATGAGAACCGGGGGCTTTTTGTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4752114‑4751964 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgggggctttttgttgGCTGCCATTATCAGGCAGTACGCACTTCC  >  NC_002947/4752008‑4752036                                                                                                                                                                                      TGAAAACGGCAAGACCACCCCGCCAGTGGCGTTGGTGAAACTGCTCAAGCTGCTGGATCGCCATCCAGAACTCTTTGAGGAAGTGCGTACTGCCTGATAATGGCAGCCAACAAAAAGCCCCCGGTTCTCATGAGCCGGGGGCTTTTTGTT                                <  1:336835/150‑1                                                                                                                      CCCCCGGCTCATGAGAACCGGGGGCTTTTTGTTGGCTGCCATTATCAGGCAGTACGCACTTCC  <  1:69029/63‑1                                                                                                                      CCCCCGGCTCATGAGAACCGGGGGCTTTTTGTTGGCTGCCATTATCAGGCAGTACGCACTTCC  >  2:69029/1‑63                                                                                                                                                                                      TGAAAACGGCAAGACCACCCCGCCAGTGGCGTTGGTGAAACTGCTCAAGCTGCTGGATCGCCATCCAGAACTCTTTGAGGAAGTGCGTACTGCCTGATAATGGCAGCCAACAAAAAGCCCCCGGCTCATGAGAACCGGGGGCTTTTTGTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4752114‑4751964 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgggggctttttgttgGCTGCCATTATCAGGCAGTACGCACTTCC  >  NC_002947/4752008‑4752036

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.