New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 511871 = | 15 (0.900) | 4 (0.250) | 4/270 | 1.5 | 21.5% | intergenic (+8/‑140) | trpC/PP_0423 | indole‑3‑glycerol phosphate synthase/hypothetical protein |
? | NC_002947 | 511893 = | 15 (0.950) | intergenic (+30/‑118) | trpC/PP_0423 | indole‑3‑glycerol phosphate synthase/hypothetical protein |
GATGTGGAGCTGATGGCAATCAACGAGGTTTACTCGTTCCTGGTGGGTGAGGCGTTCATGCGCGCCGAGCAGCCTGGCCTGGAATTACAGCGGCTGTTCTTCCCCGAGCAGGTGAAGAAGACTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACGGGTACGCG‑CCCTGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTGAAATCAACATCATAGGTGGATCAAT > NC_002947/511723‑512012 | gacgctcagggccaggggttgatcggtcattgatccacctatgatgttgatttcactggcctcttcgcgggtaaacccgctcctacgacagggcgcgtacccgtgtaggagcgggcttgcccgcgaagaggccattacaggtacaaaaaa > 2:182629‑M1/149‑150 (MQ=255) aaCGAGGTTTACTCGTTCCTGGTGGGTGAGGCGTTCATGCGCGCCGAGCAGCCTGGCCTGGAATTACAGCGGCTGTTCTTCCCCGAGCAGGTGAAGAAGACTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCttt > 2:235927/1‑150 (MQ=255) aCGAGGTTTACTCGTTCCTGGTGGGTGAGGCGTTCATGCGCGCCGAGCAGCCTGGCCTGGAATTACAGCGGCTGTTCTTCCCCGAGCAGGTGAAGAAGACTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCtttt > 2:100283/1‑150 (MQ=255) gAGGTTTACTCGTTCCTGGTGGGTGAGGCGTTCATGCGCGCCGAGCAGCCTGGCCTGGAATTACAGCGGCTGTTCTTCCCCGAGCAGGTGAAGAAGACTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCtttttt < 2:157284/150‑1 (MQ=255) gAGGTTTACTCGTTCCTGGTGGGTGAGGCGTTCATGCGCGCCGAGCAGCCTGGCCTGGAATTACAGCGGCTGTTCTTCCCCGAGCAGGTGAAGAAGACTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCtttttt < 1:28880/150‑1 (MQ=255) gcCGAGCAGCCTGGCCTGGAATTACAGCGGCTGTTCTTCCCCGAGCAGGTGAAGAAGACTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGCTTGCCCGcgaaga < 1:164643/150‑6 (MQ=255) cagcCTGGCCTGGAATTACAGCGGCTGTTCTTCCCCGAGCAGGTGAAGAAGACTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTGTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACggg > 1:134139/1‑150 (MQ=255) cctggAATTACAGCGGCTGTTCTTCCCCGAGCAGGTGAAGAAGACTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACGGGTACGCG‑cc < 1:289522/150‑1 (MQ=255) gCTGTTCTTCCCCGAGCAGGTGAAGAAGACTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACGGGTACGCG‑CCCTGTCGTAGGAGCgg < 1:220048/150‑1 (MQ=255) gCAGGTGAAGAAGACTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACGGGTACGCG‑CCCTGTCGTAGGAGCGGGTTTACCCGCGAaga < 2:321522/150‑1 (MQ=255) gCAGGTGAAGAAGACTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACGGGTACGCG‑CCCTGTCGTAGGAGCGGGTTTACCCGCGAaga < 2:321533/150‑1 (MQ=255) agaagaCTGTTCAGCACCTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGTAAACCCGCTCCTACGACAGG‑GCGCGTACCCGT‑GTAGGAGCGGGCTTGCCCGCGAAGAGGCCatta < 2:357768/150‑4 (MQ=14) gaagaCTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACGGGTACGCG‑CCCTGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTGa > 1:18907/1‑150 (MQ=255) agaCTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGTAAACCCGCTCCTACGACAGG‑GCGCGTACCCGT‑GTAGGAGCGGGCTTGCCCGCGAAGAGGCCattacag < 1:295776/150‑7 (MQ=14) gcgaagaggccattacaggtacaaaaAAGCCGGCGTTTTTGCCGGCtttt < 1:364767‑M1/24‑1 (MQ=255) gcgaagaggccattacaggtacaaaaAAGCCGGCGTTTTTGCCGGCtttt > 2:364767‑M1/27‑50 (MQ=255) cAACTGTACTGATCAAATGCAGCCGGCGTTTTGGCCGGCTTTTTTGTCCCTGTAATGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACGGGTACGCG‑CCCTGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTGAAATCAACATCATa < 1:235927/150‑1 (MQ=38) gccattacaggtacaaagAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGCAAGCCCGCTc < 2:170644‑M1/62‑1 (MQ=255) gccattacaggtacaaagAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGCAAGCCCGCTc > 1:170644‑M1/19‑80 (MQ=255) aTCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGCAAGCCCGCTACTAC‑ACGGGTACGCG‑CCCTGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTGAAATCAACATCATAGGTGGATCAAt > 2:249843/1‑150 (MQ=255) | GATGTGGAGCTGATGGCAATCAACGAGGTTTACTCGTTCCTGGTGGGTGAGGCGTTCATGCGCGCCGAGCAGCCTGGCCTGGAATTACAGCGGCTGTTCTTCCCCGAGCAGGTGAAGAAGACTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACGGGTACGCG‑CCCTGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTGAAATCAACATCATAGGTGGATCAAT > NC_002947/511723‑512012 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |