New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 2052560 | 11 (0.660) | 5 (0.400) | 3/212 | 1.4 | 33.2% | intergenic (‑88/+87) | PP_1824/PP_1825 | Smr domain‑containing protein/hypothetical protein |
? | NC_002947 | = 2052596 | 12 (0.970) | intergenic (‑124/+51) | PP_1824/PP_1825 | Smr domain‑containing protein/hypothetical protein |
CCGCGCACTTCGGCCTTGAACAGGGAAAAATCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGA > NC_002947/2052429‑2052708 | ccgcGCACTTCGGCCTTGAACAGGGAAAAATCGTCGTCTTGCATGATGCCTCCACGTTGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGccc < 2:213315/150‑1 (MQ=255) ccgcGCACTTCGGCCTTGAACAGGGAAAAATCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGccc < 1:119243/150‑1 (MQ=255) ccgcGCACTTCGGCCTTGAACAGGGAAAAATCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTAGTTGACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGccc < 2:253658/150‑1 (MQ=255) aaaaTCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACaggcaccccgccgtcttcgggctctgtgacatccccgtaggagc < 1:131367‑M1/150‑45 (MQ=255) aaaaTCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACaggcaccccgccgtcttcgggctctgtgacatccccgtaggagc < 1:325103‑M1/150‑45 (MQ=255) aTCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACaggcaccccgccgtcttcgggctctgtgacatccccgtaggagcggg < 2:352013‑M1/150‑48 (MQ=255) gggggggggGTGGCCCGCCTGGGGGGGCCTCTGCGGGGGTCACCCCGCCCCTCGGGGTTTGTCACCGAGCCCGACGCGGGGGGGGTGCTTGTTGGTGGGGTTACCCCCGCTAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGc < 2:82453/147‑1 (MQ=255) gtgtGCAGCCTGTGCGGGCCTCTTCGCGGGTGTAACCCCTCCAACGGGGAGGTAAAACAGCCCCAAGACGGCCGGGTGCCGGTGGGGGCGGGGTAAACCCCGAAGAGGCCCCCACACGTTACGCAAAACAAACAATACTGcttggtgatc > 2:367402/1‑143 (MQ=255) cAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACaggcaccccgccgtcttcgggctctgtgacatccccgtaggagcggg < 1:39375‑M1/87‑48 (MQ=255) cAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACaggcaccccgccgtcttcgggctctgtgacatccccgtaggagcggg > 2:39375‑M1/1‑40 (MQ=255) tGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTcccgcccg > 1:75481/1‑150 (MQ=255) cccGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTgtaggagcgggttcacccgcgaagaggcccgcacaggctgcacaccgccccacagtcgcgtaaactacgccgcctacgtggaggcatcatgcaagacgacgat < 2:352013‑M2/150‑104 (MQ=255) cccGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTgtaggagcgggttcacccgcgaagaggcccgcacaggctg < 1:39375‑M2/87‑41 (MQ=255) cccGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTgtaggagcgggttcacccgcgaagaggcccgcacaggctg > 2:39375‑M2/1‑47 (MQ=255) ccGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCgcggcg > 2:135529/1‑150 (MQ=255) gCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTgtaggagcgggttcacccgcgaagaggcccgcacaggctgcacaccgccccacagtcgcgtaaactacgccgcctacgtggaggcatcatgcaagacgacgatttt < 1:325103‑M2/150‑107 (MQ=255) gCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTgtaggagcgggttcacccgcgaagaggcccgcacaggctgcacaccgccccacagtcgcgtaaactacgccgcctacgtggaggcatcatgcaagacgacgatttt < 1:131367‑M2/150‑107 (MQ=255) tCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAg > 1:116289/1‑150 (MQ=255) cTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGctt < 2:14495/102‑1 (MQ=255) cTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGctt > 1:14495/1‑102 (MQ=255) aCGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGa < 2:75481/150‑1 (MQ=255) | CCGCGCACTTCGGCCTTGAACAGGGAAAAATCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGA > NC_002947/2052429‑2052708 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |