New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 4322733 = | 10 (0.600) | 4 (0.250) | 4/270 | 1.5 | 29.1% | intergenic (‑3/‑415) | PP_3791/PP_5629 | site‑specific recombinase/protease/amidase |
? | NC_002947 | 4322760 = | 10 (0.640) | intergenic (‑30/‑388) | PP_3791/PP_5629 | site‑specific recombinase/protease/amidase |
CGAAAAGGGCTAAATCACGAGTTTCCTCCGCGATTTGGAGCCTTACCCGAATGGCCCAGATATCTTTCAGTCGGAGCGGAGCTTTCTGCCCGACCAATTTTCCTTTGTTCAAAGGCTGATGGCTGCTGGTCGTAATGGCGTTCATGGCTTGTCCTCCATGTGAGGTAGGACAAGGATGATCAACCCAATCCAGAGGCGCTAACCGACCCATTGTTGTCCTTCGTGGAGAACAGTTATCGGCCAAACGCGGTCACTTAC > NC_002947/4322586‑4322843 | cGAAAAGGGCTAAATCACGAGTTTCCTCCGCGATTTGGAGCCTTACCCGAATGGCCCAGATATCTTTCAGTCGGAGCGGAGCTTTCTGCCCGACCAATTTTCCTTTGTTCAAAGGCTGATGGCTGCTGGTCGTAATGGCGTTCATGGCtt < 1:177995/150‑1 (MQ=255) acgcaattgactccagaccgccgggggcatttagtgagctcctcagactttgtcttcagtaagtgaccgcgtttggccgataactgttctccacgaaggacaacaatgggtcggttagcgcctctggattgggttgatcatcCTTGtcct < 2:359776‑M1/8‑1 (MQ=255) ctccagaccgccgggggcatttagtgagctcctcagactttgtcttcagtaagtgaccgcgtttggccgataactgttctccacgaaggacaacaatgggtcggttagcgcctctggattgggttgatcatcCTTGTCCTCCATGTGAgg < 1:310815‑M1/18‑1 (MQ=255) cACGAGTTTCCTCCGCGATTTGGAGCCTTACCCGAATGGCCCAGATATCTTTCAGTCGGAGCGGAGCTTTCTGCCCGACCAATTTTCCTTTGTTCAAAGGCTGATGGCTGCTGGTCGTAATGGCGTTCATGGCTTGTCCTCCATGTGAgg > 2:233807/1‑150 (MQ=255) cgccgggggcatttagtgagctcctcagactttgtcttcagtaagtgaccgcgtttggccgataactgttctccacgaaggacaacaatgggtcggttagcgcctctggattgggttgatcatcCTTGTCCTCCATGTGAGGTAGGACaa > 2:310815‑M1/125‑150 (MQ=255) gccgggggcatttagtgagctcctcagactttgtcttcagtaagtgaccgcgtttggccgataactgttctccacgaaggacaacaatgggtcggttagcgcctctggattgggttgatcatcc > 2:10987‑M1/124‑124 (MQ=255) gccgggggcatttagtgagctcctcagactttgtcttcagtaagtgaccgcgtttggccgataactgttctccacgaaggacaacaatgggtcggttagcgcctctggattgggttgatcatcc < 1:10987‑M1/1‑1 (MQ=255) ctccGCGATTTGGAGCCTTACCCGAATGGCCCAGATATCTTTCAGTCGGAGCGGAGCTTTCTGCCCGACCAATTTTCCTTTGTTCAAAGGCTGATGGCTGCTGGTCGTAATGGCGTTCATGGCTTGTCCTCCATGTGAGGTAGGACAAgg < 2:187560/150‑1 (MQ=255) tccGCGATTTGGAGCCTTACCCGAATGGCCCAGATATCTTTCAGTCGGAGCGGAGCTTTCTGCCCGACCAATTTTCCTTTGTTCAAAGGCTGATGGCTGCTGGTCGTAATGGCGTTCATGGCTTGTCCTCCATGTGAGGTAGGACAAGga > 1:263265/1‑150 (MQ=255) cccGAATGGCCCAGATATCTTTCAGTCGGAGCGGAGCTTTCTGCCCGACCAATTTTCCTTTGTTCAAAGGCTGATGGCTGCTGGTCGTAATGGCGTTCATGGCTTGTCCTCCATGTGAGGTAGGACAAGGATGATCAACCCAATCCagag > 2:122674/1‑150 (MQ=255) tatCTTTCAGTCGGAGCGGAGCTTTCTGCCCGACCAATTTTCCTTTGTTCAAAGGCTGATGGCTGCTGGTCGTAATGGCGTTCATGGCTTGTCCTCCATGTGAGGTAGGACAAGGATGATCAACCCAATCCAGAGGCGCTAACCGACCCa < 1:233807/150‑1 (MQ=255) tttCAGTCGGAGCGGAGCTTTCTGCCCGACCAATTTTCCTTTGTTCAAAGGCTGATGGCTGCTGGTCGTAATGGCGTTCATGGCTTGTCCTCCATGTGAGGTAGGACAAGGATGATCAACCCAATCCAGAGGCGCTAACCGACCCAttgt > 2:314619/1‑150 (MQ=255) tgaccgcgtttggccgataactgttctccacgaaggacaacaatgggtcggttagcgcctctggattgggttgatcatcCTTGTCCTCCATGTGAGGTAGGACAAGgatg > 1:269055‑M1/80‑110 (MQ=255) tgaccgcgtttggccgataactgttctccacgaaggacaacaatgggtcggttagcgcctctggattgggttgatcatcCTTGTCCTCCATGTGAGGTAGGACAAGgatg < 2:269055‑M1/31‑1 (MQ=255) aCCAATTTTCCTTTGTTCAAAGGCTGATGGCTGCTGGTCGTAATGGCGTTCATGGCTTGTCCTCCATGTGAGGTAGGACAAGGATGATCAACCCAATCCAGAGGCGCTAACCGACCCATTGTTGTCCTTCGTGGAGAACAGTTATCGGcc > 1:241039/1‑150 (MQ=255) ttGTTCAAAGGCTGATGGCTGCTGGTCGTAATGGCGTTCATGGCTTGTCCTCCATGTGAGGTAGGACAAGGATGATCAACCCAATCCAGAGGCGCTAACCGACCCATTGTTGTCCTTCGTGGAGAACAGTTATCGGCCAAACGCGGTCAc < 2:228999/150‑1 (MQ=255) tCAAAGGCTGATGGCTGCTGGTCGTAATGGCGTTCATGGCTTGTCCTCCATGTGAGGTAGGACAAGGATGATCAACCCAATCCAGAGGCGCTAACCGACCCATTGTTGTCCTTCGTGGAGAACAGTTATCGGCCAAGCGCGGTCACTTAc > 1:193019/1‑150 (MQ=255) | CGAAAAGGGCTAAATCACGAGTTTCCTCCGCGATTTGGAGCCTTACCCGAATGGCCCAGATATCTTTCAGTCGGAGCGGAGCTTTCTGCCCGACCAATTTTCCTTTGTTCAAAGGCTGATGGCTGCTGGTCGTAATGGCGTTCATGGCTTGTCCTCCATGTGAGGTAGGACAAGGATGATCAACCCAATCCAGAGGCGCTAACCGACCCATTGTTGTCCTTCGTGGAGAACAGTTATCGGCCAAACGCGGTCACTTAC > NC_002947/4322586‑4322843 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |