New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 4702712 = | 20 (1.200) | 4 (0.270) | 4/258 | 1.4 | 21.0% | intergenic (‑57/+93) | kdpD/kdpC | sensor protein/potassium‑transporting ATPase subunit C |
? | NC_002947 | 4702784 = | 12 (0.800) | intergenic (‑129/+21) | kdpD/kdpC | sensor protein/potassium‑transporting ATPase subunit C |
GCCGGGGGCAGCGCCCAGGAACACCTTCAGCCGGCCCCGGCCGGTGCGTGGGAGGTTGGCCAACAGCGCATCGGCGCGGGCGGAGTCACTCATGTTTCATCCTTTACTTTGTCCAACAGTCCGCCGCTTCAGGGAAAGCCCCCTTAACGTGTAGGAGCGGGTTTACCCGCGAATACGTCAGTGGCACCACCACCGCATTCGCGGGTGAACCCGCTCCTACAGGCTTCCTGCCAGCGCTTCGATTACCTGACAATGGCGAGCTTTTCCAAGGCCTGGTTCAACGCCAG > NC_002947/4702563‑4702849 | ggcagctgccggtcgagcgcttgcaagccttgctggaacaggccaccctccacccattgatcggcccgccggtggtcaacgtgctggcgttgaaccaggccttggaaaagctcgccattgtcaggtaatcgaagcgctggcaggaagcct < 1:311247‑M1/1‑1 (MQ=255) gctgccggtcgagcgcttgcaagccttgctggaacaggccaccctccacccattgatcggcccgccggtggtcaacgtgctggcgttgaaccaggccttggaaaagctcgccattgtcaggtaatcgaagcgctggcaggaagccTGTAg < 1:42520‑M1/5‑1 (MQ=255) cTTCAGCCGGCCCCGGCCGGTGCGTGGGAGGTTGGCCAACAGCGCATCGGCGCGGGCGGAGTCACTCATGTTTCATCCTTTACTTTGTCCAACAGTCCACCGCTTCAGGGAAAGCCCCCTTAACGTGTAGGAGCGGGTAAACCcgctcct < 1:127495/150‑5 (MQ=255) aagccttgctggaacaggccaccctccacccattgatcggcccgccggtggtcaacgtgctggcgttgaaccaggccttggaaaagctcgccattgtcaggtaatcgaagcgctggcaggaagcct > 1:127215‑M1/126‑126 (MQ=255) aagccttgctggaacaggccaccctccacccattgatcggcccgccggtggtcaacgtgctggcgttgaaccaggccttggaaaagctcgccattgtcaggtaatcgaagcgctggcaggaagcct < 2:127215‑M1/1‑1 (MQ=255) acgcaccggccggggccGGTGCGTGGGAGGTTGGCCAACAGCGCATCGGCGCGGGCGGAGTCACTCATGTTTCATCCTTTACTTTGTCCAACAGTCCGCCGCTTCAGGGAAAGCCCCCTTAACGTGTAGGAGCGGGTTTACCCGCGAATa > 2:78689/6‑150 (MQ=255) cgcaccggccggggccGGTGCGTGGGAGGTTGGCCAACAGCGCATCGGCGCGGGCGGAGTCACTCATGTTTCATCCTTTACTTTGTCCAACAGTCCGCCGCTTCAGGGAAAGCCCCCTTAACGTGTAGGAGCGGGTTTACCCGCGAATAc < 1:78689/146‑1 (MQ=255) ccggccccggccGGTGCGTGGGAGGTTGGCCAACAGCGCATCGGCGCGGGCGGAGTCACTCATGTTTCATCCTTTACTTTGTCCAACAGTCCGCCGCTTCAGGGAAAGCCCCCTTAACGTGTAGGAGCGGGTTTACCCGCGAATACGTCa > 2:384411/1‑150 (MQ=255) ccccggccGGTGCGTGGGAGGTTGGCCAACAGCGCATCGGCGCGGGCGGAGTCACTCATGTTTCATCCTTTACTTTGTCCAACAGTCCGCCGCTTCAGGGAAAGCCCCCTTAACGTGTAGGAGCGGGTTTACCCGCGAATACGTCAGTgg < 2:142199/150‑1 (MQ=255) gTGCGTGTGAGGTTGGCCAACAGCGCATCGGCGCGGGCGGAGTCACTCATGTTTCATCCTTTACTTTGTCCAACAGTCCGCCGCTTCAGGGAAAGCCCGCTTAACGTGTAGGAGCGGGTTTACCCGCGAATACGTGAGTGGgacctcctc < 2:304709/150‑3 (MQ=255) gTGCGTGGGAGGTTGGCCAACAGCGCATCGGCGCGGGCGGAGTCACTCATGTTTCATCCTTTACTTTGTCCAACAGTCCGCCGCTTCAGGGAAAGCCCCCTTAACGTGTAGGAGCGGGTTTACCCGCGAATACGTCAGTGGcaccaccac < 2:304707/150‑1 (MQ=255) gTGCGTGGGAGGTTGGCCAACAGCGCATCGGCGCGGGCGGAGTCACTCATGTTTCATCCTTTACTTTGTCCAACAGTCCGCCGCTTCAGGGAAAGCCCCCTTAACGTGTAGGAGCGGGTTTACCCGCGAATACGTCAGTGGcaccaccac < 2:304694/150‑1 (MQ=255) gTGCGTGGGAGGTTGGCCAACAGCGCATCGGCGCGGGCGGAGTCACTCATGTTTCATCCTTTACTTTGTCCAACAGTCCGCCGCTTCAGGGAAAGCCCCCTTAACGTGTAGGAGCGGGTTTACCCGCGAATACGTCAGTGGcaccaccac < 2:304688/150‑1 (MQ=255) gTTGGCCAACAGCGCATCGGCGCGGGCGGAGTCACTCATGTTTCATCCTTTACTTTGTCCAACAGTCCGCCGCTTCAGGGAAAGCCCCCTTAACGTGTAGGAGCGGGTTCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCgg < 1:379696/150‑1 (MQ=25) cattgatcggcccgccggtggtcaacgtgctggcgttgaaccaggccttggaaaagctcgccattgtcaggtaatcgaagcgctggcaggaagccTGTAGGAGCGGGTTCACCCGCGAATACGTCAGTGGCACCACCACCGCATTCGCgg > 2:347770‑M1/96‑150 (MQ=255) cggcccgccggtggtcaacgtgctggcgttgaaccaggccttggaaaagctcgccattgtcaggtaatcgaagcgctggcaggaagccTGTAGGAGCGGGTTTACCCGCGAATACGTCAGTGGCACCACCACCGCATTCGCgg > 1:103849‑M1/89‑143 (MQ=255) cggcccgccggtggtcaacgtgctggcgttgaaccaggccttggaaaagctcgccattgtcaggtaatcgaagcgctggcaggaagccTGTAGGAGCGGGTTTACCCGCGAATACGTCAGTGGCACCACCACCGCATTCGCgg < 2:103849‑M1/55‑1 (MQ=255) cTCATGTTTCATCCTTTACTTTGTCCAACAGTCCGCCGCTTCAGGGAAAGCCCCCTTAACGTGTAGGAGCGGGTTTACCCGCGAATACGTCAGTGGCACCACCACCGCATTCGCGGGTGAACCCGCTCCTACAGGCTTCCTGCCAGCGCt > 2:213887/1‑150 (MQ=255) cTCATGTTTCATCCTTTACTTTGTCCAACAGTCCGCCGCTTCAGGGAAAGCCCCCTTAACGTGTAGGAGCGGGTTTACCCGCGAATACGTCAGTGGCACCACCACCGCATTCGCGGGTGAACCCGCTCCTACAGGCTTCCTGCCAGCGCt > 2:213894/1‑150 (MQ=255) cATGTTTCATCCTTTACTTTGTCCAACAGTCCGCCGCTTCAGGGAAAGCCCCCTTAACGTGTAGGAGCGGGTTTACCCGCGAATACGTCAGTGGCACCACCACCGCATTCGCGGGTGAACCCGCTCCTACAGGCTTCCTGCCAGCGCTTc < 1:258375/150‑1 (MQ=255) tCATCCTTTACTTTGTCCAACAGTCCGCCGCTTCAGGGAAAGCCCCCTTAACGTGTAGGAGCGGGTTTACCCGCGAATACGTCAGTGGCACCACCACCGCATTCGCGGGTGAACCCGCTCCTACAGGCTTCCTGCCAGCGCTTCGATTAc < 1:213894/150‑1 (MQ=255) tCATCCTTTACTTTGTCCAACAGTCCGCCGCTTCAGGGAAAGCCCCCTTAACGTGTAGGAGCGGGTTTACCCGCGAATACGTCAGTGGCACCACCACCGCATTCGCGGGTGAACCCGCTCCTACAGGCTTCCTGCCAGCGCTTCGATTAc < 1:213887/150‑1 (MQ=255) tttACTTTGTCCAACAGTCCGCCGCTTCAGGGAAAGCCCCCTTAACGTGTAGGAGCGGGTTTACCCGCGAATACGTCAGTGGCACCACCACCGCATTCGCGGGTGAACCCGCTCCTACAGGCTTCCTGCCAGCGCTTCGATTACCTGACa > 2:42520/1‑150 (MQ=255) ttGTCCAACAGTCCGCCGCTTCAGGGAAAGCCCCCTTAACGTGTAGGAGCGGGTTTACCCGCGAATACGTCAGTGGCACCACCACCGCATTCGCGGGTGAACCCGCTCCTACAGGCTTCCTGCCAGCGCTTCGATTACCTGACAATGGCg < 1:101999/150‑1 (MQ=255) tGTCCAACAGTCCGCCGCTTCAGGGAAAGCCCCCTTAACGTGCAGGAGCGGGTTTACCCGCGAATACGTCAGTGGCACCACCACCGCATTCGCGGGTGAACCCGCTCCTACAGGCTTCCTGCCAGCGCTTCGATTACCTGACAATGGCGa < 1:87736/150‑1 (MQ=255) cAACAGTCCGCCGCTTCAGGGAAAGCCCCCTTAACGTGTAGGAGCGGGTTTACCCGCGAATACGTCAGTGGCACCACCACCGCATTCGCGGGTGAACCCGCTCCTACAGGCTTCCTGCCAGCGCTTCGATTACCTGACAATGGCGAGCtt > 2:311247/1‑150 (MQ=255) gcTTCAGGGAAAGCCCCCTTAACGTGTAGGAGCGGGTTTACCCGCGAATACGTCAGTGGCACCACCACCGCATTCGCGGGTGAACCCGCTCCTACAGGCTTCCTGCCAGCGCTTCGATTACCTGACAATGGCGAGCTTTTCCAAGGCCTg < 2:142946/150‑1 (MQ=255) tggcaggaagccTGTAGGAGCGGGTTCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGGGTAAACCCGCTCCTACAGGCTTCCTGCCAGCGCTTCGATTACCTGACAATGGCGAGCTTTTCCAAGGCCTGGTTCAACGCCAg < 2:349407‑M1/138‑1 (MQ=255) | GCCGGGGGCAGCGCCCAGGAACACCTTCAGCCGGCCCCGGCCGGTGCGTGGGAGGTTGGCCAACAGCGCATCGGCGCGGGCGGAGTCACTCATGTTTCATCCTTTACTTTGTCCAACAGTCCGCCGCTTCAGGGAAAGCCCCCTTAACGTGTAGGAGCGGGTTTACCCGCGAATACGTCAGTGGCACCACCACCGCATTCGCGGGTGAACCCGCTCCTACAGGCTTCCTGCCAGCGCTTCGATTACCTGACAATGGCGAGCTTTTCCAAGGCCTGGTTCAACGCCAG > NC_002947/4702563‑4702849 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |