New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 5806026 | 8 (0.480) | 3 (0.190) | 3/276 | 1.8 | 26.4% | coding (283/537 nt) | pilN | type IV pili biogenesis protein PilN |
? | NC_002947 | = 5806044 | 9 (0.560) | coding (265/537 nt) | pilN | type IV pili biogenesis protein PilN |
CACTGCACCGGACGCAGCCAACCCTGTCACCTGCAAGCGGCCACTATCAAGGCTCAGGCCGATTAGCTGCACACCTTCAGGCAACGCCCCTTCAAGGTCGGCGAAGACACCGGCCAATACACCCTGATGGGCGCGCAGGCCCTCCAGGGCCACCGCACGGGCAAGTAGCGCTTCATGCTGTGCACGCACTTCGGCCAGCGGCTGCAACTGCTCATCCTGTATATCAAGGGTCGCTTGGCGCTGGGTATTGGCCAGCACCTGCTGCTGCCCGC > NC_002947/5805901‑5806172 | cacTGCACCGGACGCAGCCAACCCTGTCACCTGCAAGCGGCCACTATCAAGGCTCAGGCCGATTAGCTGCACACCTTCAGGCAACGCCCCTTCAAGGTCGGCGAAGACACCGGCCAATACACCCTGATGGGCGCGCAGGCCCTCcagggt > 1:248995‑M2/1‑144 (MQ=255) aCCGGACGCAGCCAACCCTGTCACCTGCAAGCGGCCACTATCAAGGCTCAGGCCGATTAGCTGCACACCTTCAGGCAACGCCCCTTCAAGGTCGGCGAAGACACCGGCCAATACACCCTGATGGGCGCGCAGGCCCTGGAGGGcctgcgc < 1:208538/150‑6 (MQ=255) ggACGCAGCCAACCCTGTCACCTGCAAGCGGCCACTCTCAAGGCTCAGGCCGATTAGCTGCACACCTTCAGGCAACGCCCCTTCAAGGTCTGCGAAGACACCGGCCAATACACCCTGATGGGCGCGCTGGCCCTCCAGGGCCACCGCACg < 2:245183/150‑1 (MQ=255) gACGCAGCCAACCCTGTCACCTGCAAGCGGCCACTATCAAGGCTCAGGCCGATTAGCTGCACACCTTCAGGCAACGCCCCTTCAAGGTCGGCGAAGACACCGGCCAATACACCCTGATGGGCGCGCAGGCCCTCCAGGGCCACCGCACgg > 2:316230/1‑150 (MQ=255) cAACCCTGTCACCAGCAAGCGGCCACGATCAAGGCTCAGGCCGATTAGCTGCACACCTTCCGGCAACGCCCCTTCAAGGTCGGCGCAGACACCGGCCAATACACCCTGATGGGCGCGCAGGCCCTCCAGGGCCACCGCACGGGCAAGTAg < 1:235175/150‑1 (MQ=255) aCCTGCAAGCGGCCACTATCAAGGCTCAGGCCGATTAGCTGCACACCTTCAGGCAACGCCCCTTCAAGGTCGGCGAAGACACCGGCCAATACACCCTGATGGGCGCGCAGGCCCTCCAGGGCCACCGCACGGGCACGTAGCGCTTCATGc > 2:232947/1‑150 (MQ=255) tGCAAGCGGCCACTATCAAGGCTCAGGCCGATTAGCTGCACACCTTCAGGCAACGCCCCGTCAAGGTCGGCGAAGACACCGGCCAATACACCCTGATGGGCGCGCAGGCCCTCCAGGGCCACCGCACGGGCAAGTAGCGCTTCATGCcgt < 1:290892/150‑1 (MQ=255) cAAGGTCGGCGAAGACACCGGCCAATACACCCTGATGGGCGCGCAGGCCCTCCAGGGCCACCGCACGGGCAAGTAGCGCTTCATGCTGTGCACGCACTTCGGCCAGCGGCTGCAACTGCTCATCCTGTATATCAAGGGTCGCTTGGCGCt < 1:253323/150‑1 (MQ=255) gTCGGCGAAGACACCGGCCAATACACCCTGgagggcctgcgcgcccatcagggtgtattggc < 1:341351‑M1/62‑33 (MQ=255) gTCGGCGAAGACACCGGCCAATACACCCTGgagggcctgcgcgcccatcagggtgtattggc > 2:341351‑M1/1‑30 (MQ=255) gCCAATACACCCTGATGGGCGCGCAGGCCCTCcagggtgtattggccggtgtcttcgccgac < 1:341351‑M2/62‑31 (MQ=255) gCCAATACACCCTGATGGGCGCGCAGGCCCTCcagggtgtattggccggtgtcttcgccgac > 2:341351‑M2/1‑32 (MQ=255) acCCTGgagggcctgcgcgcccatcagggtgtattggccggtgtcttcgccgaccttgaaggggcgttgcctgaaggtgtgcagctaatcggcctgagccttgatagtggccgcttgcaggtgacagggttggctgcgtccggtgcagtg > 1:248995‑M1/1‑6 (MQ=255) ccTGATGGGCGCGCAGGCCCTCCAGGGCCACCGCACGGGCAAGTAGCGCTTCATGATGTGCACGCACTTCGGCCAGCGGCTGCCACTGCTCATCCTGTCTATCAAGGGTCGCTTGGCGCGGGGTATTGGCCAGCACCTGCTGCTGCCcgc > 1:253201/1‑150 (MQ=255) | CACTGCACCGGACGCAGCCAACCCTGTCACCTGCAAGCGGCCACTATCAAGGCTCAGGCCGATTAGCTGCACACCTTCAGGCAACGCCCCTTCAAGGTCGGCGAAGACACCGGCCAATACACCCTGATGGGCGCGCAGGCCCTCCAGGGCCACCGCACGGGCAAGTAGCGCTTCATGCTGTGCACGCACTTCGGCCAGCGGCTGCAACTGCTCATCCTGTATATCAAGGGTCGCTTGGCGCTGGGTATTGGCCAGCACCTGCTGCTGCCCGC > NC_002947/5805901‑5806172 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |