New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 274147 = | 5 (0.300) | 3 (0.180) | 3/282 | 1.9 | 37.7% | coding (423/801 nt) | PP_0221 | methionine ABC transporter substrate‑binding protein |
? | NC_002947 | 274172 = | 5 (0.300) | coding (398/801 nt) | PP_0221 | methionine ABC transporter substrate‑binding protein |
CGTACCAGTTGCACCGCCTCGACCTGAAGGATCTTCAGCTTTTTAGGGTTGGCGAGGATGTCAGCCTCGGTGGCCTTGTAGCCCACGCCGGGCTTGAGGGTGATCAACCCGGCCTTGGCCAGCAGCAGCAGGCCACGGCCGCTGTTGATCGGGTCGTTGGCGATGGCCACGCTGGCGCCTTCAGGCAGCTCGGCAAAGCTTTTGTACTTTTTCGAGTACAGGCCAACGTTGTTGATGATGCCCGGGGCGTAAGGCACAAGGTTGAAGCCTGCAGCAGCCTTGGCGTTTTCCAGGAA > NC_002947/274025‑274320 | ggcttcaaccttgtgccttacgccccgggcatcatcaacaacgttggcctgtactcgaaaaagtacaaaagctttgccgagctgcctgaaggcgccagcgtggccatcgccaacgacccgatCAGCAGCAGGCCACGGCCGCTGTTGATc > 2:141983‑M1/123‑150 (MQ=255) aGGATGTCAGCCTCGGTGGCCTTGTAGCCCACGCCGGGCTTGAGGGTGATCAACCCGGCCTTGGCCAGCAGCAGCAGGCCACGGCCGCTGTTGATCGGGTCGTTGGCGATGGCCACGCTGGCGCCTTCAGGCAGCTCGGCAAAGCTTTTg < 1:172663/150‑1 (MQ=255) cAGCCTCGGTGGCCTTGTAGCCCACGCCGGGCTTGAGGGTGATCAACCCGGCCTTGGCCAGCAGCAGCAGGCCACGGCCGCTGTTGATCGGGTCGTTGGCGATGGCCACGCTGGCGCCTTCAGGCAGCTCGGCAAAGCTTTTGTACtttt > 2:128013/1‑150 (MQ=255) aaaagctttgccgagctgcctgaaggcgccagcgtggccatcgccaacgacccgatCAGCAGCAGGCCACGGCCGCTGTTGAt < 1:46102‑M1/27‑1 (MQ=255) aaaagctttgccgagctgcctgaaggcgccagcgtggccatcgccaacgacccgatCAGCAGCAGGCCACGGCCGCTGTTGAt > 2:46102‑M1/57‑83 (MQ=255) gatcaacagcggccgtggcctgctgctgATCGGGTCGTTGGCGATGGCCACGCTGGCGCCTTCAGGCAGCTCGGCAAAGCTTTTGTACTTTTTCGAGTACAGGCCAACGTTGTTGATGATGCCCGGGGCGTAAGGCACAAGGTTGAAGcc > 2:141983‑M2/29‑150 (MQ=255) atcaacagcggccgtggcctgctgctgATCGGGTCGTTGGCGATGGCCACGCTGGCGCCTTCAGGCAGCTCGGCAAAGCtttt < 1:46102‑M2/56‑1 (MQ=255) atcaacagcggccgtggcctgctgctgATCGGGTCGTTGGCGATGGCCACGCTGGCGCCTTCAGGCAGCTCGGCAAAGCtttt > 2:46102‑M2/28‑83 (MQ=255) aCGGCCGCTGTTGATCGGGTCGTTGGCGATGGCCACGCTGGCGCCTTCAGGCAGCTCGGCAAAGCTTTTGTACTTTTTCGAGTACAGGCCAACGTTGTTGATGATGCCCGGGGCGTAAGGCACAAGGTTGAAGCCTGCAGCAGCCTTGGc > 1:232421/1‑150 (MQ=255) cGCTGTTGATCGGGTCGTTGGCGATGGCCACGCTGGCGCCTTCAGGCAGCTCGGCAAAGCTTTTGTACTTTTTCGAGTACAGGCCAACGTTGTTGATGATGCCCGGGGCGTAAGGCACaa < 1:257469/120‑1 (MQ=255) cGCTGTTGATCGGGTCGTTGGCGATGGCCACGCTGGCGCCTTCAGGCAGCTCGGCAAAGCTTTTGTACTTTTTCGAGTACAGGCCAACGTTGTTGATGATGCCCGGGGCGTAAGGCACaa > 2:257469/1‑120 (MQ=255) gATCGGGTCGTTGGCGATGGCCACGCTGGCGCCTTCAGGCAGCTCGGCAAAGCTTTTGTACTTTTTCGAGTACAGGCCAACGTTGTTGATGATGCCCGGGGCGTAAGGCACAAGGTTGAAGCCTGCAGCAGCCTTGGCGTTTTCCAGGaa > 2:146369‑M2/2‑150 (MQ=255) | CGTACCAGTTGCACCGCCTCGACCTGAAGGATCTTCAGCTTTTTAGGGTTGGCGAGGATGTCAGCCTCGGTGGCCTTGTAGCCCACGCCGGGCTTGAGGGTGATCAACCCGGCCTTGGCCAGCAGCAGCAGGCCACGGCCGCTGTTGATCGGGTCGTTGGCGATGGCCACGCTGGCGCCTTCAGGCAGCTCGGCAAAGCTTTTGTACTTTTTCGAGTACAGGCCAACGTTGTTGATGATGCCCGGGGCGTAAGGCACAAGGTTGAAGCCTGCAGCAGCCTTGGCGTTTTCCAGGAA > NC_002947/274025‑274320 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |