New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 1076410 = | 13 (0.780) | 3 (0.190) | 3/274 | 1.8 | 21.9% | intergenic (+4/‑217) | mreB/mreC | cell wall structural actin‑like protein MreB/cell shape‑determining protein MreC |
? | NC_002947 | 1076429 = | 9 (0.560) | intergenic (+23/‑198) | mreB/mreC | cell wall structural actin‑like protein MreB/cell shape‑determining protein MreC |
GCTGGCCCAGGAAACCGGCCTGCCGGTGATTGTCGCCGAGGACCCGCTGACCTGCGTCGCCCGTGGCGGCGGTCGCGCCCTGGAGATGATGGACAAGCACGCGATGGACCTGCTCTCCAGCGAGTGATCCCGCTCGCTGTTCA‑CGAGCGCCCGGTTTACAGGTAGTACGTACAGTGCTACCTGTATGCGCTGGGCTGGCGCCCGTTTGGGGCGCCGTATCCGTCAACCCGCAACCAGGCTGGTGCGTTGTTCCATGTCCAATGACCTCCTGAGTCGTCCA > NC_002947/1076280‑1076559 | ggacgactcaggaggtcattggacatggaacaacgcaccagcctggttgcgggttgacggatacggcgccccaaacgggcgccagcccagcgcatacaggtagcactgtacgtactacctgtaaaccgggCGCTCGCTGTTCA‑CGAgcgc > 1:244751‑M1/131‑150 (MQ=255) cGGCCTGCCGGTGATTGTCGCCGAGGACCCGCTGACCTGCGTCGCCCGTGGCGGCGGTCGCGCCCTGGAGATGATGGACAAGCACGCGATGGACCTGCTCTCCAGCGAGTGATCCCGCTCGCTGTTCA‑CGAGCGCCCGGTTTACAGgtag < 2:165789/150‑1 (MQ=255) gCCGAGGACCCGCTGACCTGCGTCGCCCGTGGCGGCGGTCGCGCCCTGGAGATGATGGACAAGCACGCGATGGACCTGCTCTCCAGCGAGTGATCCCGCTCGCTGTTCA‑CGAGCGCCCGGTTTACAGGTAGTACGTACAGTGCTACCTGt < 2:201946/150‑1 (MQ=255) ccGTGGCGGCGGTCGCGCCCTGGAGATGATGGACAAGCACGCGATGGACCTGCTCTCCAGCGAGTGATCCCGCTCGCTGTTCA‑CGAGCGCCCGGTTTACAGGTAGTACGTACAGTGCTACCTGTATGCGCTGGGCTGGCGCCCGTTTggg < 2:6660/150‑1 (MQ=255) aaacgggcgccagcccagcgcatacaggtagcactgtacgtactacctgtaaaccgggcgctcgctgttcacgagcgCCCGGtt < 1:69510‑M2/7‑1 (MQ=255) aaacgggcgccagcccagcgcatacaggtagcactgtacgtactacctgtaaaccgggcgctcgctgttcacgagcgCCCGGtt > 2:69510‑M2/78‑84 (MQ=255) ggAGTTGATGGACAAGCACGCGATGGACCTGCTCTCCAGCGAGTGATCCCGCTCGCTGTTCA‑CGAGCGGGCGGTTTACAGGTAGTACGTACAGTGGTAGCTGTATGCGCTGGGCTGGCGCCCGTTTGGGGCGCCGTATCCGTCAACCCGc > 2:145144/1‑150 (MQ=255) ggAGATGATGGACAAGCACGCGATGGACCTGCTCTCCAGCGAGTGATCCCGCTCGCTGTTCA‑CGAGCGCCCGGTTTACAGGTAGTACGTACAGTGCTACCTGTATGCGCTGGGCTGGCGCCCGTTTGGGGCGCCGTATCCGTCAACCCGc > 2:186483/1‑150 (MQ=255) cTGCTCTCCAGCGAGTGATCCCGCTCGCTGTTCA‑CGAGCGCCCGGTTTACAGGTAGTACGTACAGTGCTa > 1:71118/1‑70 (MQ=255) cTGCTCTCCAGCGAGTGATCCCGCTCGCTGTTCA‑CGAGCGCCCGGTTTACAGGTAGTACGTACAGTGCTa < 2:71118/70‑1 (MQ=255) aaccgggCGCTCG‑TGAACAGCGAGCGCCCGGTTTACAGGTAGTACGTACAGTGCTACCTGTATGCGCTGGGCTGGCGCCCGttt < 1:69510‑M1/77‑1 (MQ=255) aaccgggCGCTCG‑TGAACAGCGAGCGCCCGGTTTACAGGTAGTACGTACAGTGCTACCTGTATGCGCTGGGCTGGCGCCCGttt > 2:69510‑M1/8‑84 (MQ=255) aTCCCGCTCGCTGTTCA‑CGAGCGCCCGGTTTACAGGTAGTACGTACAGTGCTACCTGTATGCGCTGGGCTGGCGCCCGTTTGGGGCGCCGTATCCGTCAACCCGCAACCAGGCTGGTGCGTTGTTCCATGTc < 1:194616/132‑1 (MQ=255) aTCCCGCTCGCTGTTCA‑CGAGCGCCCGGTTTACAGGTAGTACGTACAGTGCTACCTGTATGCGCTGGGCTGGCGCCCGTTTGGGGCGCCGTATCCGTCAACCCGCAACCAGGCTGGTGCGTTGTTCCATGTc > 2:194616/1‑132 (MQ=255) gcgctcgtgaacagcgagcgCCCGGTTTACAGGTAGTACGTACAGTGCTACCTGTATGCGCTGGGCTGGCGCCCGTTTGGGGCGCCGTATCCGTCAACCCGCAACCAGGCTGGTGCGTTGTTCCATGTCCAATGACCTCCTGAGTCGTcc > 1:244751‑M2/21‑150 (MQ=255) CGCTCGCTGTTCA‑CGAGCGCCCGGTTTACAGGTAGTACGTACAGTGCTACCTGTATGCGCTGGGCTGGCGCCCGTTTGGGGCGCCGTATCCGTCAACCCGCAACCAGGCTGGTGCGTTGTTCCATGTCCAATGACCTCCTGAGTCGTCCa < 1:46671‑M1/150‑1 (MQ=255) | GCTGGCCCAGGAAACCGGCCTGCCGGTGATTGTCGCCGAGGACCCGCTGACCTGCGTCGCCCGTGGCGGCGGTCGCGCCCTGGAGATGATGGACAAGCACGCGATGGACCTGCTCTCCAGCGAGTGATCCCGCTCGCTGTTCA‑CGAGCGCCCGGTTTACAGGTAGTACGTACAGTGCTACCTGTATGCGCTGGGCTGGCGCCCGTTTGGGGCGCCGTATCCGTCAACCCGCAACCAGGCTGGTGCGTTGTTCCATGTCCAATGACCTCCTGAGTCGTCCA > NC_002947/1076280‑1076559 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |