| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1499443 = | 19 (1.140) | 3 (0.210) | 3/240 | 1.6 | 18.2% | intergenic (+13/‑153) | trpS/zapE | tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein |
| ? | NC_002947 | 1499526 = | 11 (0.790) | intergenic (+96/‑70) | trpS/zapE | tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGG‑CACCGGCTTTGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGA > NC_002947/1499394‑1499609 | gagCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGGGCCCCCGCAAAAGGCGCCCCGGGGCAAGGCCACCGG‑GTTGGCGGGGTTCGCGGGCCCCCCCCCGCCCCCCGACGGCTTGcccgtaat > 2:225398/1‑144 (MQ=255) ttGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGCAACAGGCGCCGCGGTGCATTG‑CACCCGCGTTTCCGGTGTTGGCGGGCACCCCCGCGCCCACACACAGGTTGGCAGTAAGCGGGCCGATCGcaaaa > 2:12990/1‑146 (MQ=255) ttGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGGGCCCGCGCAACAGGCGCCCCGGGGCCAGG‑CACCCGCGGTGCCCGTGGTAGCCGGCACCCCCGCTCCCCCACAAAGATTTCCATTAAGCGGGCCAAACGcgaac > 2:12991/1‑146 (MQ=255) cTGAGGCTGCCAAACGGTGGGTGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGG‑CACCGGCTTTGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGtttttt < 2:190321/150‑1 (MQ=255) cTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGG‑CACCGGCTTTGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGtttttt < 2:382568/150‑1 (MQ=255) gCCAAAGGGTGGGCGCGGGCGTGCCCGCGAAACTGGCGCCGCGGTGCAGGG‑CACGGGCTTGGCCGGTGTCCGCGGGCACGCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTc < 1:29428/150‑1 (MQ=37) gTGGGAGCGGGCGTGCCCCCGAAACAGGCGCCGCGGTGCATGG‑CACCGGCTTTGCCGGGTGTCGCGGGCACGCCCGCGCCCACAGACTGTTTGCCATTATGCCGGGCGATAGCGAAAGTGGCGGCCCGTTTTTTGTTGCCTCGCGAACGa > 2:352072/1‑150 (MQ=21) ccgcgaacaccggcaaagccggtgccatgcaccgcggcgccggtgttcgcgggcacgcccgctcccacAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTa > 1:20022‑M2/69‑150 (MQ=255) gcaaagccggtgccatgcaccgcggcgcctgtttcgcgggcacgcccgctcccacAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGa < 1:258043‑M2/84‑1 (MQ=255) gcaaagccggtgccatgcaccgcggcgcctgtttcgcgggcacgcccgctcccacAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGa > 2:258043‑M2/56‑139 (MQ=255) cGGTGTTCGCGGGCACGCCCGCTCCCACAGACTGATTGCCATTAAGc > 1:294181/1‑47 (MQ=255) cGGTGTTCGCGGGCACGCCCGCTCCCACAGACTGATTGCCATTAAGc > 1:294218/1‑47 (MQ=255) cGGTGTTCGCGGGCACGCCCGCTCCCACAGACTGATTGCCATTAAGc < 2:294181/47‑1 (MQ=255) cGGTGTTCGCGGGCACGCCCGCTCCCACAGACTGATTGCCATTAAGc < 2:294218/47‑1 (MQ=255) | GAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGG‑CACCGGCTTTGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGA > NC_002947/1499394‑1499609 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |