New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1640954 =	37 (2.220)	4 (0.240)	4/284	1.6	10.0%	coding (39/957 nt)	cmoB	tRNA 5‑methoxyuridine(34) synthase CmoB
	?	NC_002947	1640972 =	35 (2.110)					coding (21/957 nt)	cmoB	tRNA 5‑methoxyuridine(34) synthase CmoB
Rejected: Frequency below/above cutoff threshold.

ATTTCACTGGGTTGCAGGGCGGGCAGGGCTTCCAGCGCCCCGCGCCAGCGGTCGAGGTCACCGTGACCCTTTTCCAGCTTGGCGTCCAGTTGTGCTTGCAGGCCTTGCGACCAGGAAGCCAGGGGCGTGCCCGCCAGGCGGCGGACGAGGGGAGACAGATCGATCATGGCAGGGCTATCAACGAGGCGAAGTTAAGGCATTGGAACCAAGGCACCACTTTCGAGAAGCCGGCTGCGCGCAGGCGTTCCTGGTGGGTTTCGAGTGTATCGGGCTTCATCACGTTTTCGAT  >  NC_002947/1640826‑1641114                                                                                                                                                   |                                                                                                                                               aTTTCACTGGGTTGCAGGGCGGGCAGGGCTTCCAGCGCCCCGCGCCAGCGGTCGAGGTCACCGTGACCCTTTTCCAGCTTGGCGTCCAGTTGTGCTTGCAGGCCTTGCGACCAGGAAGCCAGGGGCGTGCCCGCCAGGCGGCGGACGAgg                                                                                                                                             <  1:289749/150‑1 (MQ=255)                      caccaggaacgcctgcgcgcagccggcttctcgaaagtggtgccttggttccaatgccttaacttcgcctcgttgatagccctgccatgatcgatctgtctcccctcGTCCGCCAGGCGGCGGACGa                                                                                                                                               <  1:100051‑M1/20‑1 (MQ=255)                      caccaggaacgcctgcgcgcagccggcttctcgaaagtggtgccttggttccaatgccttaacttcgcctcgttgatagccctgccatgatcgatctgtctcccctcGTCCGCCAGGCGGCGGACGa                                                                                                                                               >  2:100051‑M1/108‑127 (MQ=255)                                   gcgcCCCGCGCCAGCGGTCGAGGTCACCGTGACCCTTTTCCAGCTTGGCGTCCAGTTGTGCTTGCAGGCCTTGCGACCAGGAAGCCAGGGGCGTGCCCGCCAGGCGGCGGACGAGGGGAGACAGATCGATCATGGCAGGGCTATCAACGa                                                                                                           >  2:97487/1‑150 (MQ=255)                                   gcgcCCCGCGCCAGCGGTCGAGGTCACCGTGACCCTTTTCCAGCTTGGCGTCCAGTTGTGCTTGCAGGCCTTGCGACCAGGAAGCCAGGGGCGTGCCCGCCAGGCGGCGGACGAGGGGAGACAGATCGATCATGGCAGGGCTATCAACGa                                                                                                           >  2:355543/1‑150 (MQ=255)                                        ccGCGCCAGCGGTCGAGGTCACCGTGACCCTTTTCCAGCTTGGCGTCCAGTTGTGCTTGCAGGCCTTGCGACCAGGAAGCCAGGGGCGTGCCCGCCAGGCGGCGGACGAGGGGAGACAGATCGATCATGGCAGGGCTATCAACGAGGCGa                                                                                                      >  2:92476/1‑150 (MQ=255)                                        ccGCGCCAGCGGTCGAGGTCACCGTGACCCTTTTCCAGCTTGGCGTCCAGTTGTGCTTGCAGGCCTTGCGACCAGGAAGCCAGGGGCGTGCCCGCCAGGCGGCGGACGAGGGGAGACAGATCGATCATGGCAGGGCTATCAACGAGGCGa                                                                                                      >  2:18195/1‑150 (MQ=255)                                         cgcgCCAGCGGTCGAGGTCACCGTGACCCTTTTCCAGCTTGGCGTCCAGTTGTGCTTGCAGGCCTTGCGACCAGGAAGCCAGGGGCGTGCCCGCCAGGCGGCGGACGAGGGGAGACAGATCGATCATGGCAGGGCTATCAACGAGGCGaa                                                                                                     >  2:153758/1‑150 (MQ=255)                                              cAGCGGTCGAGGTCACCGTGACCCTTTTCCAGCTTGGCGTCCAGTTGTGCTTGCAGGCCTTGCGACCAGGAAGCCAGGGGCGTGCCCGCCAGGCGGCGGACGAGGGGAGACAGATCGATCATGGCAGGGCTATCAACGAGGCGAAGTTaa                                                                                                <  2:52928/150‑1 (MQ=255)                                                  ggTCGAGGTCACCGTGACCCTTTTCCAGCTTGGCGTCCAGTTGTGCTTGCAGGCCTTGCGACCAGGAAGCCAGGGGCGTGCCCGCCAGGCGGCGGACGAGGGGAGACAGATCGATCATGGCAGGGCTATCAACGAGGCGAAGTTAAGGCa                                                                                            >  2:271185/1‑150 (MQ=255)                                                  ggTCGAGGTCACCGTGACCCTTTTCCAGCTTGGCGTCCAGTTGTGCTTGCAGGCCTTGCGACCAGGAAGCCAGGGGCGTGCCCGCCAGGCGGCGGACGAGGGGAGACAGATCGATCATGGCAGGGCTATCAACGAGGCGAAGTTAAGGCa                                                                                            >  2:256441/1‑150 (MQ=255)                                                   gTCGAGGTCACCGTGACCCTTTTCCAGCTTGGCGTCCAGTTGTGCTTGCAGGCCTTGCGACCAGGAAGCCAGGGGCGTGCCCGCCAGGCGGCGGACGAGGGGAGACAGATCGATCATGGCAGGGCTATCAACGAGGCGAAGTTAAGGCAt                                                                                           >  1:131680/1‑150 (MQ=255)                                                      gAGGTCACCGTGACCCTTTTCCAGCTTGGCGTCCAGTTGTGCTTGCAGGCCTTGCGACCAGGAAGCCAGGGGCGTGCCCGCCAGGCGGCGGACGAGGGGAGACAGATCGATCATGGCAGGGCTATCAACGAGGCGAAGTTAAGGCATTgg                                                                                        >  2:305454/1‑150 (MQ=255)                                                         gTCACCGTGACCCTTTTCCAGCTTGGCGTCCAGTTGTGCTTGCAGGCCTTGCGACCAGGAAGCCAGGGGCGTGCCCGCCAGGCGGCGGACGAGGGGAGACAGATCGATCATGGCAGGGCTATCAACGAGGCGAAGTTAAGGCATTGGAAc                                                                                     <  2:131680/150‑1 (MQ=255)                                                         gTCACCGTGACCCTTTTCCAGCTTGGCGTCCAGTTGTGCTTGCAGGCCTTGCGACCAGGAAGCCAGGGGCGTGCCCGCCAGGCGGCGGACGAGGGGAGACAGATCGATCATGGCAGGGCTATCAACGAGGCGAAGTTAAGGCATTGGAAc                                                                                     <  1:298382/150‑1 (MQ=255)                                                              cGTGACCCTTTTCCAGCTTGGCGTCCAGTTGTGCTTGCAGGCCTTGCGACCAGGAAGCCAGGGGCGTGCCCGCCAGGCGGCGGACGAGGGGAGACAGATCGATCATGGCAGGGCTATCAACGAGGCGACGTTAAGGCATTGGAACCAAgg                                                                                >  1:171633/1‑150 (MQ=255)                                                              cGTGACCCTTTTCCAGCTTGGCGTCCAGTTGTGCTTGCAGGCCTTGCGACCAGGAAGCCAGGGGCGTGCCCGCCAGGCGGCGGACGAGGGGAGACAGATCGATCATGGCAGGGCTATCAACGAGGCGAAGTTAAGGCATTGGAACCAAgg                                                                                >  2:346147/1‑150 (MQ=255)                                                              cGTGACCCTTTTCCAGCTTGGCGTCCAGTTGTGCTTGCAGGCCTTGCGACCAGGAAGCCAGGGGCGTGCCCGCCAGGCGGCGGACGAGGGGAGACAGATCGATCATGGCAGGGCTATCAACGAGGCGAAGTTAAGGCATTGGAACCAAgg                                                                                >  2:152942/1‑150 (MQ=255)                                                               gTGACCCTTTTCCAGCTTGGCGTCCAGTTGTGCTTGCAGGCCTTGCGACCAGGAAGCCAGGGGCGTGCCCGCCAGGCGGCGGACGAGGGGAGACAGATCGATCATGGCAGGGCTATCAACGAGGCGAAGTTAAGGCATTGGAACCAAGGc                                                                               <  1:92476/150‑1 (MQ=255)                                                                tGACCCTTTTCCAGCTTGGCGTCCAGTTGTGCTTGCAGGCCTTGCGACCAGGAAGCCAGGGGCGTGCCCGCCAGGCGGCGGACGAGGGGAGACAGATCGATCATGGCAGGGCTATCAACGAGGCGAAGTTAAGGCATTGGAACCAAGGca                                                                              >  2:82999/1‑150 (MQ=255)                                                                        ttCCAGCTTGGCGTCCAGTTGTGCTTGCAGGCCTTGCGACCAGGAAGCCAGGGGCGTGCCCGCCAGGCGGCGGACGAGGGGAGACAGATCGATCATGGCAGGGCTATCAACGAGGc                                                                                                        <  1:28001/116‑1 (MQ=255)                                                                        ttCCAGCTTGGCGTCCAGTTGTGCTTGCAGGCCTTGCGACCAGGAAGCCAGGGGCGTGCCCGCCAGGCGGCGGACGAGGGGAGACAGATCGATCATGGCAGGGCTATCAACGAGGc                                                                                                        >  2:28001/1‑116 (MQ=255)                                                                          ccAGCTTGGCGTCCAGTTGTGCTTGCAGGCCTTGCGACCAGGAAGCCAGGGGCGTGCCCGCCAGGCGGCGGACGAGGGGAGACAGATCGATCATGGCAGGGCTATCAACGAGGCGAAGTTAAGGCATTGGAACCAAGGCACCACTTTCga                                                                    <  2:138953/150‑1 (MQ=255)                                                                          aatgccttaacttcgcctcgttgatagccctgccatgatcgatctgtctcccctcGCCCGCCAGGCGGCGGACGAgggg                                                                                                                                           <  1:67296‑M1/24‑1 (MQ=255)                                                                          aatgccttaacttcgcctcgttgatagccctgccatgatcgatctgtctcccctcGCCCGCCAGGCGGCGGACGAgggg                                                                                                                                           >  2:67296‑M1/56‑79 (MQ=255)                                                                             ccTTGGCGTCCAGTTGTGCTTGCAGGCCTTGCGACCAGGAAGCCAGGGGCGTGCCCGCCAGGCGGCGGACGAGGGGAGACAGATCGATCATGGCAGGGCTATCAACGAGGCGAAGTTAAGGCATTGGAACCAAGGCACCACTTTCGAGaa                                                                 <  2:334541/149‑1 (MQ=255)                                                                                                       ccTTGCGACCAGGAAGCCAGGGGCGTGCCCGCCAGGCGGCGGACGAGGGGAGACAGATCGATCATGGCAGGGCTATCAACGAGGCGAAGTTAAGGCATTGGAACCAAGGCACCACTTTCGAGAAGCCGGCTGCGCGCAGGCGTTCCtggt                                       <  1:66764/150‑1 (MQ=255)                                                                                                         ttGCGACCAGGAAGCCAGGGGCGTGCCCGCCAGGCGGCGGACGAGGGGAGACCGATCGATCATGGCAGGGCTATCAACGAGGCGAAGTTAAGGCATTGGAACCAAGGCACCACTTTCGAGAAGCCGGCTGCGCGCAGGCGTTCCtggtgg                                     >  2:168514/1‑150 (MQ=255)                                                                                                         ttGCGACCAGGAAGCCAGGGGCGTGCCCGCCAGGCGGCGGACGAGGGGAGACAGATCGATCATGGCAGGGCTATCAACGAGGCGAAGTTAAGGCATTGGAACCAAGGCACCACTTTCGAGAAGCCGGCTGCGCGCAGGCGTTCCtggtgg                                     >  1:237862/1‑150 (MQ=255)                                                                                                                cAGGAAGCCAGGGGCGTGCCCGCCAGGCGGCGGACGAGGGGAGACAGATCGATCATGGCAGGGCTATCAACGAGGCGAAGTTAAGGCATTGGAACCAAGGCACCACTTTCGAGAAGCCGGCTGCGCGCAGGCGTTCCTGGTGGGTTTCGa                              <  1:282612/150‑1 (MQ=255)                                                                                                                 aGGAAGCCAGGGGCGTGCCCGCCAGGCGGCGGACGAGGGGAGACAGATCGATCATGGCAGGGCTATCAACGAGGCGAAGTTAAGGCATTGGAACCAAGGCACCACTTTCGAGAAGCCGGCTGCGCGCAGGCGTTCCTGGTGGGTTTCGAg                             <  1:304020/150‑1 (MQ=255)                                                                                                                 aGGAAGCCAGGGGCGTGCCCGCCAGGCGGCGGACGAGGGGAGACAGATCGATCATGGCAGGGCTATCAACGAGGCGAAGTTAAGGCATTGGAACCAAGGCACCACTTTCGAGAAGCCGGCTGCGCGCAGGCGTTCCTGGTGGGTTTCGAg                             <  1:304039/150‑1 (MQ=255)                                                                                                                  ggAAGCCAGGGGCGTGCCCGCCAGGCGGCGGACGAGGGGAGACAGATCGATCATGGCAGGGCTATCAACGAGGCGAAGTTAAGGCATTGGAACCAAGGCACCACTTTCGAGAAGCCGGCTGCGCGCAGGCGTTCCTGGTGGGTTTCGAgt                            >  1:149410/1‑150 (MQ=255)                                                                                                                           cccctcgtccgccgcctggcgggcGAGGGGAGACAGATCGATCATGGCAGGGCTATCAACGAGGCGAAGTTAAGGCAtt                                                                                          >  2:67296‑M2/25‑79 (MQ=255)                                                                                                                           cccctcgtccgccgcctggcgggcGAGGGGAGACAGATCGATCATGGCAGGGCTATCAACGAGGCGAAGTTAAGGCAtt                                                                                          <  1:67296‑M2/55‑1 (MQ=255)                                                                                                                               tcgtccgccgcctggcggacGAGGGGAGACAGATCGATCATGGCAGGGCTATCAACGAGGCGAAGTTAAGGCATTGGAACCAAGGCACCACTTTCGAGAAGCCGGCTGCGCGCAGGCGTTCCtggtg                                      <  1:100051‑M2/107‑1 (MQ=255)                                                                                                                               tcgtccgccgcctggcggacGAGGGGAGACAGATCGATCATGGCAGGGCTATCAACGAGGCGAAGTTAAGGCATTGGAACCAAGGCACCACTTTCGAGAAGCCGGCTGCGCGCAGGCGTTCCtggtg                                      >  2:100051‑M2/21‑127 (MQ=255)                                                                                                                                   ccGCCAGGCGGCGGACGAGGGGAGACAGATCGATCATGGCAGGGCTATCAACGAGGCGAAGTTAAGGCATTGGAACCAAGGCACCACTTTCGAGAAGCCGGCTGCGCGCAGGCGTTCCTGGTGGGTTTCGAGTGTATCGGGCTTCATCAc           <  2:127788/150‑1 (MQ=255)                                                                                                                                     gCCAGGCGGCGGACGAGGGGAGACAGATCGATCATGGCAGGGCTATCAACGAGGCGAAGTTAAGGCATTGGAACCAAGGCACCACTTTCGAGAAGCCGGCTGCGCGCAGGCGTTCCTGGTGGGTTTCGAGTGTATCGGGCTTCATCACGt         >  2:240963/1‑150 (MQ=255)                                                                                                                                     gCCAGGCGGCGGACGAGGGGAGACAGATCGATCATGGCAGGGCTATCAACGAGGCGAAGTTAAGGCATTGGAACCAAGGCACCACTTTCGAGAAGCCGGCTGCGCGCAGGCGTTCCTGGTGGGTTTCGAGTGTATCGGGCTTCATCACGt         >  2:240958/1‑150 (MQ=255)                                                                                                                                         ggcggcGGACGAGGGGAGACAGATCGATCATGGCAGGGCTATCAACGAGGCGAAGTTAAGGCATTGGAACCAAGGCACCACTTTCGAGAAGCCGGCTGCGCGCAGGCGTTCCTGGTGGGTTTCGAGTGTATCGGGCTTCATCACGTTTTc     <  1:355543/150‑1 (MQ=255)                                                                                                                                         ggcggcGGACGAGGGGAGACAGATCGATCATGGCAGGGCTATCAACGAGGCGAAGTTAAGGCATTGGAACCAAGGCACCACTTTCGAGAAGCCGGCTGCGCGCAGGCGTTCCTGGTGGGTTTCGAGTGTATCGGGCTTCATCACGTTTTc     <  1:97487/150‑1 (MQ=255)                                                                                                                                            ggcggACGAGGGGAGACAGATCGATCATGGCAGGGCTATCAACGAGGCGAAGTTAAGGCATTGGAACCAAGGCACCACTTTCGAGAAGCCGGCTGCGCGCAGGCGTTCCTGGTGGGTTTCGAGTGTATCGGGCTTCATCACGTTTTCGAt  <  2:236435/150‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                               ATTTCACTGGGTTGCAGGGCGGGCAGGGCTTCCAGCGCCCCGCGCCAGCGGTCGAGGTCACCGTGACCCTTTTCCAGCTTGGCGTCCAGTTGTGCTTGCAGGCCTTGCGACCAGGAAGCCAGGGGCGTGCCCGCCAGGCGGCGGACGAGGGGAGACAGATCGATCATGGCAGGGCTATCAACGAGGCGAAGTTAAGGCATTGGAACCAAGGCACCACTTTCGAGAAGCCGGCTGCGCGCAGGCGTTCCTGGTGGGTTTCGAGTGTATCGGGCTTCATCACGTTTTCGAT  >  NC_002947/1640826‑1641114

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.