New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 1780127 | 2 (0.120) | 8 (0.550) | 7/248 | 0.8 | 77.2% | intergenic (+44/+62) | PP_1587/dapC | NhaP‑type Na+(K+)/H+ antiporter/N‑succinyl‑L,L‑diaminopimelate aminotransferase |
? | NC_002947 | = 1780151 | 3 (0.210) | intergenic (+68/+38) | PP_1587/dapC | NhaP‑type Na+(K+)/H+ antiporter/N‑succinyl‑L,L‑diaminopimelate aminotransferase |
GAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCA > NC_002947/1780018‑1780298 | gAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTgtacctgtgggagcgg > 1:220480‑M2/1‑134 (MQ=255) cTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCTGCGCGGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGt > 2:131030/1‑150 (MQ=255) aTCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACACGTACTGCGCTGCGCGTGTAATCAGCGCTGTTCCTGGGGGCGCGGGCGGGCCCGCGAAGGGGGTGGTCAGCAGTTTTGCAGGAAGGCGCGAATGCGCGCCGCCCCGGCCATGCAtt > 2:130992/1‑150 (MQ=25) acaGGTACTGCGCTGCGCTTGAAATCAGCGCTgtacctgtgggagcgggcgcgcccgcgaagggccttgatagggtctacttgactgaacccaggttcgcctcactcatatcca > 1:20906‑M2/1‑32 (MQ=255) acaGGTACTGCGCTGCGCTTGAAATCAGCGCTgtacctgtgggagcgggcgcgcccgcgaagggccttgatagggtctacttgactgaacccaggttcgcctcactcatatcca < 2:20906‑M2/114‑83 (MQ=255) tACTGCGCTGCGCTTGAAATCAGCGCTgtacctgtgggagcgggcgcgcccgcgaagggccttgatagggtctacttgactgaacccaggttcgcctcact < 1:130798‑M2/101‑75 (MQ=255) tACTGCGCTGCGCTTGAAATCAGCGCTgtacctgtgggagcgggcgcgcccgcgaagggccttgatagggtctacttgactgaacccaggttcgcctcact > 2:130798‑M2/1‑27 (MQ=255) aCTGCGCTGCGCTTGAAATCAGCGCTgtacctgtgggagcgggcgtgcccgcgaagggccttgatagggtctacttgactgaacccaggttcgcctcactcatatccagctcacccagtacttgccgcaccacctcatcccccaccaggt < 2:41023‑M2/150‑125 (MQ=255) aCTGCGCTGCGCTTGAAATCAGCGCTgtacctgtgggagcgggcgtgcccgcgaagggccttgatagggtctacttgactgaacccaggttcgcctcactcatatccagctcacccagtacttgccgcaccacctcatcccccaccaggt < 2:41031‑M2/150‑125 (MQ=255) aGCGCTgtacctgtgggagcgggcgcgcccgcgaagggccttgatagggtctacttgactgaa > 1:275076‑M2/1‑6 (MQ=255) aGCGCTgtacctgtgggagcgggcgcgcccgcgaagggccttgatagggtctacttgactgaa < 2:275076‑M2/63‑58 (MQ=255) gcTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCa > 1:144929/1‑150 (MQ=255) | GAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCA > NC_002947/1780018‑1780298 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |