| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,107,600 | 0 | T | A | 54.5% | ‑3.7 / 10.3 | 11 | intergenic (+40/+45) | PP_3612/PP_3613 | TonB‑dependent receptor/L‑sorbosone dehydrogenase |
| Reads supporting (aligned to +/- strand): ref base T (3/2); new base A (2/4); total (5/6) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.67e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.59e-01 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CGTGTTCGACCGTGACTACTATGCCTCGGCACATGGCTCGGTCGACCTGATCACCCCAGGGGCACCGCGCACGCTGGAAGCCAGCTTCAACTACCGCTTCTGACCCACGCGCAATGCCTGTCAGTCAGCAATTGGGCCGCTCTGCGGCCCATCGCCAGCAAGCTTTGACGATTTGATCAGATAGCATTCAGCGATTACGCGTCACTCGCCACACCGTATTCGCCAGGTCATCGGCAATGATCAACGCCCCACGCGGGTCCACCGTCACGCCAACCGGTCGCCCCCGGGTCTT > NC_002947/4107458‑4107749 | cGTGTTCGACCGTGACTACTATGCCTCGGCACATGGCTCGGTCGACCTGATCACCCCAGGGGCACCGCGCACGCTGGAAGCCAGCTTCAACTACCGCTTCTGACCCACGCGCAATGCCTGTCAGTCAGCAATTGGGCCGCAGAGCGGccc < 2:228435/150‑1 (MQ=255) tgtTCGACCGTGACTACTATGCCTCGGCACATGGCTCGGTCGACCTGATCACCCCAGGGGCACCGCGCACGCTGGAAGCCAGCTTCAACTACCGCTTCTGTCCCACGCGCAATGCCTGTCAGTCAGCAATTGGGCCGCAGAGCGGCCCaa < 2:9720/150‑2 (MQ=255) aCCTGATCACCCCAGGGGCACCGCGCACGCTGGAAGCCAGCTTCAACTACCGCTTCTGACCCACGCGCAATGCCTGTCAGTCAGCAATTGGGCCGCTCTGCGGCCCATCGCCAGCAAGCTTTGACGATTTGATCAGATAGCATTCAGCGa < 2:80587/150‑1 (MQ=255) cccAGGGGCACCGCGCACGCTGGAAGCCAGCTTCAACTACCGCTTCTGACCCACGCGCAATGCCTGTCAGTCAGCAATTGGGCCGCTCTGCGGCCCATCGCCAGCAAGCTTTGACGATTTGATCAGATAGCATTCAGCGATTACGCGTCa > 1:284190/1‑150 (MQ=255) cccAGGGGCACCGCGCACGCTGGAAGCCAGCTTCAACTACCGCTTCTGACCCACGCGCAATGCCTGTCAGTCAGCAATTGGGCCGCTCTGCGGCCCATCGCCAGCAAGCTTTGACGATTTGATCAGATAGCATTCAGCGATTACGCGTCa > 2:27393/1‑150 (MQ=255) aCCGCGCACGCTGGAAGCCAGCTTCAACTACCGCTTCTGACCCACGCGCAATGCCTGTCAGTCAGCAATTGGGCCGCAGAGCGGCCCaa < 1:120258/89‑2 (MQ=255) aCCGCGCACGCTGGAAGCCAGCTTCAACTACCGCTTCTGACCCACGCGCAATGCCTGTCAGTCAGCAATTGGGCCGCAGAGCGGCCCaa < 1:120260/89‑2 (MQ=255) aCCGCGCACGCTGGAAGCCAGCTTCAACTACCGCTTCTGACCCACGCGCAATGCCTGTCAGTCAGCAATTGGGCCGCAGAGCGGCCCaa > 2:120258/1‑88 (MQ=255) aCCGCGCACGCTGGAAGCCAGCTTCAACTACCGCTTCTGACCCACGCGCAATGCCTGTCAGTCAGCAATTGGGCCGCAGAGCGGCCCaa > 2:120260/1‑88 (MQ=255) aGCTTCAACTACCGCTTCTGACCCACGCGCAATGCCTGTCAGTCAGCAATTGGGCCGCTCTGCGGCCCATCGCCAGCAAGCTTTGACGATTTGATCAGATAGCATTCAGCGATTACGCGTCACTCGCCACACCGTATTCGCCAGGTCATc < 2:200612/150‑1 (MQ=255) aaTGCCTGTCAGTCAGCAATTGGGCCGCTCTGCGGCCCATCGCCAGCAAGCTTTGACGATTTGATCAGATAGCATTCAGCGATTACGCGTCACTCGCCACACCGTATTCGCCAGGTCATCGGCAATGATCAACGCCCCACGCGGGTCCAc > 2:121152/1‑150 (MQ=255) tGCGGCCCATCGCCAGCAAGCTTTGACGATTTGATCAGATAGCATTCAGCGATTACGCGTCACTCGCCACACCGTATTCGCCAGGTCATCGGCAATGATCAACGCCCCACGCGGGTCCACCGTCACGCCAACCGGTCGCCCCCGGGTCtt > 1:11708/1‑150 (MQ=255) tGCGGCCCATCGCCAGCAAGCTTTGACGATTTGATCAGATAGCATTCAGCGATTACGCGTCACTCGCCACACCGTATTCGCCAGGTCATCGGCAATGATCAACGCCCCACGCGGGTCCACCGTCACGCCAACCGGTCGCCCCCGGGTCtt > 1:11709/1‑150 (MQ=255) | CGTGTTCGACCGTGACTACTATGCCTCGGCACATGGCTCGGTCGACCTGATCACCCCAGGGGCACCGCGCACGCTGGAAGCCAGCTTCAACTACCGCTTCTGACCCACGCGCAATGCCTGTCAGTCAGCAATTGGGCCGCTCTGCGGCCCATCGCCAGCAAGCTTTGACGATTTGATCAGATAGCATTCAGCGATTACGCGTCACTCGCCACACCGTATTCGCCAGGTCATCGGCAATGATCAACGCCCCACGCGGGTCCACCGTCACGCCAACCGGTCGCCCCCGGGTCTT > NC_002947/4107458‑4107749 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |