New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 652786	31 (1.400)	16 (0.990)	5/194	0.7	58.5%	coding (1960/1962 nt)	ctpL	methyl‑accepting chemotaxis protein CtpL
	?	NC_002947	4810176 =	0 (0.000)					intergenic (‑318/‑237)	PP_4234/dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2

ACAGGCGGCGCATGGCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTCGTGAATCCGCTCGCTGTGGTCACGAA  >  NC_002947/652654‑652920                                                                                                                                     |                                                                                                                                       aCAGGCGGCGCATGGCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGAc                                                                                                                                     >  1:288731/1‑136 (MQ=255)  ctggcggcGCATGGCGGACTGGCGTGGTGGAACGTGCCCGGCATTATAACGGATGCGCAGGAATATTTGGCCCTAAACAAAGGTAGGAGCGGGTTTACCCGCTAAGCGCCGCGCGGGCGGCGCTCGATCTCAGAcc                                                                                                                                    <  2:577965/134‑1 (MQ=25)      cggcgCATGGCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGCCCCTGa                                                                                                                                >  2:458617/1‑136 (MQ=255)            ttGGCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCTGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTc                                                                                                                          <  1:366989/135‑1 (MQ=255)            tgtgCGGAGTCGGGAGGGGTAAGGTGCCCGTCTTTTTAACGTATGCGCTGTAATATTTGCCCCGAACCAACCGATGGTGCGGGTTAACCGGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTc                                                                                                                          <  2:412980/133‑1 (MQ=16)                 ggACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGTAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCAcc                                                                                                                     <  1:409794/136‑1 (MQ=255)                                  cctGCCCCGCATGATAACGCATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACACGCGAAGCGCCGCGCGCGCGGCCCACGAACTAAAAACCTGAAAGCAAGCACCCCCCCGTtcacctcacc                                                                                                    >  2:474268/3‑136 (MQ=18)                                  cGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCAcc                                                                                                    >  2:17055/1‑136 (MQ=255)                                   gTGCCCGGCATGATAAGGTTTGCGCAGGATTAATTGCCCCGAAACAAAGGTTGGAGCGGGTTAACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCg                                                                                                   <  2:88470/136‑1 (MQ=25)                                    tGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGc                                                                                                  <  2:288731/136‑1 (MQ=255)                                           cATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCt                                                                                           <  1:315294/136‑1 (MQ=255)                                             ttaTAACGGATGGGCAGTAATAATTGGCCCGAAACAAACTTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTca                                                                                         <  2:105732/134‑1 (MQ=255)                                             tGATAACGTATGCGCAGTAAAAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCTAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTca                                                                                         <  1:448790/136‑1 (MQ=255)                                             tGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCGCGATATCAGACCCAGAACGCTCGCACCGCCCGGTTAAGCTCACCCCCCACGcgaa                                                                                         >  2:104216/1‑133 (MQ=25)                                                 aaCGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGGCCAGGCAgagcag                                                                                     >  2:493045/1‑136 (MQ=255)                                                 aaCGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCAAGATATCAGACCCAGAACGCACGCACCGCCCGGTTCAGCTAACCGCCCAGGCTcagcac                                                                                     >  2:231429/1‑135 (MQ=25)                                                      aTGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGtt                                                                                >  2:572242/1‑136 (MQ=255)                                                        gcgcAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCa                                                                              <  1:17055/136‑1 (MQ=255)                                                            aGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCCGCGCTCGCTCTCAGACCCTGAACGCTCGCACCGCCCCGGTCACCACCCCGCCCCGGCTCAGCCGCGGGTCccccc                                                                          >  2:342560/1‑135 (MQ=18)                                                                ataatTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCCcaggcgctgaaaatcctcccgcaaacacctcaaaattccaacgccgtccactcaaaattccaacgc                                                                      >  2:354932‑M1/1‑70 (MQ=255)                                                                ataatTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAcaggcgctgaaaatcctccggcaaacacctcaaaattccaacgccgtccactcaaaattccaacgc                                                                      >  2:50020‑M1/1‑70 (MQ=255)                                                                ataatTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAcaggc                                                                                                                                   >  2:485144‑M1/1‑70 (MQ=255)                                                                ataatTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAcaggc                                                                                                                                   <  1:485144‑M1/75‑6 (MQ=255)                                                                ataatTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAcagg                                                                                                                                    <  2:207728‑M1/74‑5 (MQ=255)                                                                ataatTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAcagg                                                                                                                                    <  2:446833‑M1/74‑5 (MQ=255)                                                                ataatTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAcagg                                                                                                                                    >  2:29831‑M1/1‑70 (MQ=255)                                                                ataatTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAcagg                                                                                                                                    >  1:207728‑M1/1‑70 (MQ=255)                                                                ataatTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAcagg                                                                                                                                    <  2:116554‑M1/74‑5 (MQ=255)                                                                ataatTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAcagg                                                                                                                                    <  1:29831‑M1/74‑5 (MQ=255)                                                                ataatTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAcagg                                                                                                                                    >  1:116554‑M1/1‑70 (MQ=255)                                                                ataatTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAcagg                                                                                                                                    >  1:446833‑M1/1‑70 (MQ=255)                                                                ataatTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAcacgcgctgaaaatcctccggcaaacacctcaaaattacaacgccgtccacacaaaattccaactc                                                                      >  2:396158‑M1/1‑70 (MQ=255)                                                                ataatTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAca                                                                                                                                      <  1:370781‑M1/72‑3 (MQ=255)                                                                ataatTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAca                                                                                                                                      >  2:370781‑M1/1‑70 (MQ=255)                                                                 taatTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGAACACAcaggcgctgaaaatcctccggcaaacacctcaaaattccaacgccgtccactcaaaattccaacgcc                                                                     >  1:125777‑M1/1‑69 (MQ=255)                                                                     tGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGcc                                                                 <  2:527922/136‑1 (MQ=255)                                                                       gCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCAAGGCTCAGCCGCTGTTAACCCTGTTTACGcccc                                                               >  2:140296/1‑136 (MQ=255)                                                                          cGAAAAAAAGGTAGGTGCGGGTTTACCCGCGACGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCg                                                            <  1:104216/136‑1 (MQ=255)                                                                                       ggAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCa                                               <  1:572242/136‑1 (MQ=255)                                                                                       ggAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCCGCa                                               <  1:395113/136‑1 (MQ=255)                                                                                       cgAGCGGGTTAACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCa                                               <  1:334345/135‑1 (MQ=255)                                                                                               tttCCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCt                                       <  2:385388/136‑1 (MQ=255)                                                                                               tttACCGGCTAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCt                                       <  1:401954/136‑1 (MQ=255)                                                                                                 aaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTc                                     <  1:17343/135‑1 (MQ=255)                                                                                                     cgcgAAGCGCCGCGCGGGCGGCGCTCGATCTCAcaggcgctgaaaatcctccggcaaacacctcaaaattccaacgccgtccactcaaaattccaacgccgccccctcaaaattccaacgccgcctcccctcgaaa                                 >  1:150909‑M1/1‑33 (MQ=255)                                                                                                           gcgcCGCGCGGGCGGCGCTCGATCTCAcaggcgctgaaaatcctccggcaaacacctcaaaattccaacgccgtccactcaaaattccaacgccgccccctcaaaattccaacgccgcctcccctcgaaaatccaa                           >  1:108173‑M1/1‑27 (MQ=255)                                                                                                            cgccgcGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTCGt                          <  1:382806/136‑1 (MQ=255)                                                                                                                  gcgggcggCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTCGTGAATcc                    <  1:494406/136‑1 (MQ=255)                                                                                                                    gggcggCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTCGTGAATCcgc                  <  2:23032/136‑1 (MQ=255)                                                                                                                                 cctcccaggcgctgaaaatcctccggcaaacacctcaaaaatccaacgccgtccactcaaaattccaacgccgccccctcaaaattccaacgccgcctcccctcgaaaatccaacaacaaagaccctgcaaaccca     <  1:368063‑M1/135‑132 (MQ=255)                                                                                                                                    cacaggcgctgaaaatcctccggcaaacacctcaaaattccaacgccgtccactcaaaattccaacgccgccccctcaaaattccaacgccgcctcccctcgaaaatccaacaacaaagaccctgcaaacccagaa  <  1:525800‑M1/136‑135 (MQ=255)                                                                                                                                     |                                                                                                                                       ACAGGCGGCGCATGGCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTCGTGAATCCGCTCGCTGTGGTCACGAA  >  NC_002947/652654‑652920

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.